Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 2.0e-135 485.7 244 100.0
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.9e-129 465.3 238 97.9
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 3.7e-129 464.9 244 93.9
FAN14G4481 Fragaria x ananassa HOM05D004140 ORTHO05D203265 1.0e-81 307.4 161 93.2
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 7.9e-79 297.7 253 62.8
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 1.1e-77 293.9 248 62.1
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 1.1e-27 127.9 221 39.4
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-27 127.9 221 39.4
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-27 127.9 221 39.4
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.4e-27 127.5 221 39.4
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 5.4e-27 125.6 223 40.8
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.2e-26 124.4 231 37.7
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 6.0e-26 122.1 222 37.4
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 1.0e-25 121.3 223 39.5
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 1.7e-25 120.6 225 35.6
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 5.0e-25 119.0 221 39.4
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 5.0e-25 119.0 230 37.0
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 8.6e-25 118.2 221 35.3
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.1e-24 117.9 222 38.3
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.1e-24 117.9 221 37.1
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.5e-24 117.5 221 37.1
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 1.5e-24 117.5 221 38.0
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 1.9e-24 117.1 222 38.7
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.9e-24 117.1 222 38.7
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 2.5e-24 116.7 221 37.1
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 3.3e-24 116.3 224 37.1
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 3.3e-24 116.3 225 36.9
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 3.3e-24 116.3 221 36.7
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 3.3e-24 116.3 220 36.4
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 3.3e-24 116.3 223 37.7
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 4.3e-24 115.9 221 37.1
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 4.3e-24 115.9 221 38.9
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 5.6e-24 115.5 227 38.8
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 7.3e-24 115.2 221 38.5
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 7.3e-24 115.2 222 36.9
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 7.3e-24 115.2 221 36.2
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 9.5e-24 114.8 221 36.7
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 9.5e-24 114.8 242 36.0
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 9.5e-24 114.8 222 37.8
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 9.5e-24 114.8 223 36.3
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 1.2e-23 114.4 222 37.4
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.6e-23 114.0 222 37.8
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 1.6e-23 114.0 223 36.3
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 2.1e-23 113.6 216 35.2
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 2.1e-23 113.6 221 38.0
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 2.8e-23 113.2 223 35.9
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 3.6e-23 112.8 221 37.6
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 3.6e-23 112.8 221 34.4
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 4.7e-23 112.5 221 37.1
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 6.2e-23 112.1 225 38.7
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 8.0e-23 111.7 231 36.4
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 8.0e-23 111.7 219 37.0
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 8.0e-23 111.7 222 37.4
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 8.0e-23 111.7 221 36.2
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 8.0e-23 111.7 222 36.5
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.1e-22 111.3 242 35.1
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.1e-22 111.3 242 35.1
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 1.1e-22 111.3 221 35.7
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 1.4e-22 110.9 242 35.1
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 1.4e-22 110.9 220 35.0
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 1.4e-22 110.9 225 35.6
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 1.4e-22 110.9 221 37.1
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 1.4e-22 110.9 221 37.1
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 1.8e-22 110.5 246 34.6
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 1.8e-22 110.5 240 35.8
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 1.8e-22 110.5 225 34.7
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 2.3e-22 110.2 220 35.0
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 2.3e-22 110.2 222 36.9
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 2.3e-22 110.2 222 36.9
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 2.3e-22 110.2 222 36.0
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 3.1e-22 109.8 231 35.9
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 3.1e-22 109.8 222 36.9
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 4.0e-22 109.4 222 37.4
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 4.0e-22 109.4 222 36.9
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 5.2e-22 109.0 222 35.1
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 6.8e-22 108.6 227 35.7
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 8.9e-22 108.2 221 35.7
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 8.9e-22 108.2 222 36.9
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 8.9e-22 108.2 222 35.6
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 1.2e-21 107.8 227 35.2
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 1.2e-21 107.8 223 38.1
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 1.2e-21 107.8 221 34.4
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.5e-21 107.5 228 34.2
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.6e-21 106.7 222 34.7
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 3.4e-21 106.3 237 34.2
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 3.4e-21 106.3 227 33.9
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 3.4e-21 106.3 222 33.3
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 3.4e-21 106.3 240 33.8
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 7.5e-21 105.1 240 33.3
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 7.5e-21 105.1 245 33.5
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 9.8e-21 104.8 225 33.8
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 9.8e-21 104.8 223 34.5
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 1.7e-20 104.0 227 33.5
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 1.7e-20 104.0 224 36.6
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 2.9e-20 103.2 227 33.9
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 3.7e-20 102.8 224 34.4
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 8.3e-20 101.7 166 39.2
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 1.9e-19 100.5 251 32.7
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 1.9e-19 100.5 251 32.7
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 2.4e-19 100.1 229 33.2
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 7.0e-19 98.6 223 35.0
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 3.5e-18 96.3 165 36.4
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 6.0e-18 95.5 214 32.7
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 6.0e-18 95.5 241 32.4
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 1.0e-17 94.7 223 34.1
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 1.3e-17 94.4 223 34.1
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 1.3e-17 94.4 214 32.2
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 1.7e-17 94.0 242 32.2
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 2.3e-17 93.6 208 36.5
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 6.6e-17 92.0 164 35.4
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 1.1e-16 91.3 227 29.1
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 1.1e-16 91.3 96 47.9
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 1.9e-16 90.5 240 31.2
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 4.3e-16 89.4 113 44.2
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 5.6e-16 89.0 104 44.2
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 2.8e-15 86.7 113 42.5
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 2.8e-15 86.7 222 34.7
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 2.8e-15 86.7 207 33.3
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 4.7e-15 85.9 203 31.5
FAN02G3615 Fragaria x ananassa HOM05D004140 ORTHO05D207337 4.7e-15 85.9 49 79.6
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 6.2e-15 85.5 262 28.6
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 8.1e-15 85.1 113 42.5
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 8.1e-15 85.1 228 31.1
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 1.4e-14 84.3 215 31.2
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.8e-14 84.0 252 30.6
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.3e-14 83.6 207 34.3
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 2.3e-14 83.6 222 29.3
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 5.8e-13 79.0 224 29.0
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.1e-11 74.7 221 33.0
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 1.9e-11 73.9 82 42.7
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 9.2e-11 71.6 218 29.8
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.0e-09 68.2 237 27.4
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 1.3e-09 67.8 152 31.6
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 1.7e-09 67.4 65 49.2
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 2.3e-09 67.0 122 38.5
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 4.3e-08 62.8 178 29.2


User provided reference genes

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