Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1651.7 826 100.0
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1606.7 826 97.5
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1530.4 826 93.5
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1451.0 826 88.5
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1370.1 821 82.9
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1296.6 696 93.8
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1285.4 821 77.2
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1284.6 814 78.0
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1274.6 815 76.8
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1273.8 818 77.1
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1273.1 819 77.9
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1271.9 819 77.3
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1271.1 828 76.6
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1265.8 813 77.0
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1265.4 814 77.4
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1253.4 758 81.5
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1247.6 818 75.6
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1243.0 817 75.4
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1242.3 814 75.3
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1240.3 810 76.4
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1237.2 817 75.9
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1236.9 810 76.2
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1236.5 810 76.2
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1234.2 813 76.4
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1231.9 815 75.5
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1231.1 860 71.5
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1229.2 818 74.9
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1228.8 814 75.2
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1227.6 813 75.0
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1224.5 813 74.2
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1223.8 813 75.2
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 0.0e+00 1223.4 930 68.5
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1221.8 813 75.8
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1214.1 812 74.1
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1213.7 777 77.0
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1208.7 822 73.5
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1206.8 812 73.0
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1205.7 811 73.5
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1204.9 752 77.4
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1201.0 813 72.9
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1200.7 814 72.6
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1197.6 814 72.0
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1197.2 805 74.9
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1196.0 811 74.1
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1195.6 816 73.2
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1194.5 798 74.7
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1192.2 813 72.6
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1189.1 811 71.8
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1184.9 815 72.3
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1184.9 811 72.1
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1182.2 815 71.5
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1181.0 812 71.6
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1179.9 812 71.7
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1177.9 812 71.3
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 0.0e+00 1175.6 812 71.1
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1175.2 812 71.3
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 0.0e+00 1174.8 812 70.6
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1173.7 812 71.1
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1172.9 811 72.0
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1170.6 825 71.5
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1169.1 815 71.0
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 0.0e+00 1167.9 760 75.7
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1166.8 813 71.1
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 0.0e+00 1162.5 812 70.7
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 0.0e+00 1160.2 812 70.7
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1159.1 812 70.4
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1158.7 813 71.5
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1157.5 824 70.5
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 0.0e+00 1157.1 812 70.6
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1156.0 813 71.6
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1155.2 812 70.2
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 0.0e+00 1150.6 812 70.4
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1150.6 812 70.2
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1144.4 812 69.8
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1142.5 822 69.8
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 0.0e+00 1141.3 771 72.2
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 0.0e+00 1135.2 779 72.9
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 0.0e+00 1131.7 758 73.6
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1131.7 822 69.2
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 0.0e+00 1126.3 698 78.7
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1123.6 717 77.1
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1122.5 753 72.9
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1119.4 812 68.7
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1119.0 812 68.8
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1110.5 817 68.2
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1109.0 750 72.7
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 0.0e+00 1104.7 822 70.3
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 0.0e+00 1090.5 811 67.1
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 0.0e+00 1089.3 736 74.6
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 0.0e+00 1083.9 817 66.5
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 0.0e+00 1082.0 757 71.9
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 0.0e+00 1080.1 815 65.6
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 3.3e-310 1068.1 711 73.1
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 5.2e-308 1060.8 750 70.0
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 1.5e-307 1059.3 742 71.8
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 1.6e-304 1049.3 663 77.1
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 4.7e-293 1011.1 766 67.2
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 2.4e-289 998.8 817 62.2
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 1.0e-287 993.4 745 65.6
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 1.4e-281 973.0 766 65.5
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 3.3e-278 961.8 778 62.0
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.1e-276 956.8 633 76.0
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.2e-275 953.4 663 72.7
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 2.0e-275 952.6 766 62.5
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 2.6e-275 952.2 765 61.8
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 2.8e-253 879.0 532 80.3
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 1.4e-249 866.7 561 73.8
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 6.1e-248 861.3 647 66.5
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 3.0e-247 859.0 657 66.4
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 3.9e-247 858.6 755 58.7
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 2.2e-234 816.2 552 72.5
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 2.9e-218 762.7 797 53.6
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 1.7e-197 693.7 446 75.6
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 1.4e-188 664.1 486 68.9
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 1.9e-153 547.4 391 69.8
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 7.6e-150 535.4 374 72.2
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.9e-149 533.5 611 49.9
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 5.0e-125 453.0 272 81.6
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 5.5e-124 449.5 352 63.1
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 4.5e-102 376.7 249 71.1
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 4.4e-97 360.1 287 63.1
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.3e-85 322.0 377 49.6
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 2.1e-83 314.7 260 67.3
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 1.7e-80 305.1 266 62.4
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 1.2e-73 282.3 252 61.5
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.1e-71 275.8 226 61.1
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.5e-65 255.4 214 63.6
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 4.2e-63 247.3 227 54.2
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 7.8e-62 243.0 146 86.3
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 6.6e-61 240.0 198 63.1
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 9.9e-57 226.1 180 65.0
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.7e-54 218.0 180 62.8
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 1.1e-47 196.1 156 64.7
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 9.3e-47 193.0 117 81.2
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-45 188.0 214 49.1
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 8.7e-45 186.4 148 62.2
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.9e-39 168.7 118 69.5
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 3.2e-39 167.9 147 60.5
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 3.2e-39 167.9 150 60.0
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 9.3e-39 166.4 101 75.2
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.6e-38 165.6 148 59.5
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 2.7e-38 164.9 148 58.1
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 2.1e-35 155.2 85 84.7
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 8.2e-35 153.3 93 81.7
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 7.6e-33 146.7 149 51.0
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 1.0e-32 146.4 95 71.6
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 7.9e-30 136.7 104 68.3
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 6.5e-24 117.1 75 76.0
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 6.5e-24 117.1 75 76.0
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 8.5e-24 116.7 122 53.3
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.4e-23 115.9 75 74.7
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 1.4e-23 115.9 72 76.4
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.4e-23 115.9 74 71.6
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 9.4e-23 113.2 80 70.0
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.2e-22 112.8 61 83.6
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 5.1e-21 107.5 192 37.5
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 5.1e-21 107.5 86 62.8
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 9.7e-20 103.2 121 48.8
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 3.7e-19 101.3 192 36.5
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 1.3e-16 92.8 147 38.8
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 4.4e-12 77.8 45 77.8
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 1.7e-11 75.9 37 81.1
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 4.8e-11 74.3 63 60.3
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 1.1e-10 73.2 154 34.4
MD00G1188100 Malus domestica HOM05D004228 ORTHO05D043558 1.1e-07 63.2 29 86.2
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 1.6e-06 59.3 44 59.1
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.1e-06 58.9 94 40.4
arahy.Tifrunner.gnm1.ann1.H1NXHC Arachis hypogaea HOM05D000009 ORTHO05D000008 4.7e-06 57.8 38 73.7


User provided reference genes

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