Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0967 Fragaria x ananassa HOM05D002131 ORTHO05D002141 5.6e-90 334.3 180 100.0
FAN13G1329 Fragaria x ananassa HOM05D002131 ORTHO05D002141 1.4e-51 206.8 289 50.5
FAN18G4395 Fragaria x ananassa HOM05D002131 ORTHO05D002141 5.3e-48 194.9 290 49.3
FAN08G0536 Fragaria x ananassa HOM05D002131 ORTHO05D002141 1.2e-47 193.7 289 48.8
FvH4_5g16420 Fragaria vesca HOM05D002131 ORTHO05D002141 1.2e-42 177.2 290 46.6
RcHm_v2.0_Chr7g0179681 Rosa chinensis HOM05D002131 ORTHO05D002141 4.2e-37 158.7 294 43.5
Prupe.5G178900 Prunus persica HOM05D002131 ORTHO05D002141 2.3e-27 126.3 288 39.2
MD06G1180900 Malus domestica HOM05D002131 ORTHO05D002141 6.8e-27 124.8 289 38.1
CANSAT80G2042 Cannabis sativa HOM05D002131 ORTHO05D002141 9.8e-26 120.9 287 38.3
FAN22G0629 Fragaria x ananassa HOM05D002131 ORTHO05D002141 3.7e-25 119.0 80 80.0
FAN16G0807 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.0e-23 113.2 76 84.2
MD14G1186000 Malus domestica HOM05D002131 ORTHO05D002141 7.8e-23 111.3 287 36.9
AUR62032080 Chenopodium quinoa HOM05D002131 ORTHO05D002141 3.0e-19 99.4 87 63.2
Aa31LG1G16780 Aethionema arabicum HOM05D002131 ORTHO05D002141 5.2e-19 98.6 87 60.9
AUR62041853 Chenopodium quinoa HOM05D002131 ORTHO05D002141 5.2e-19 98.6 87 63.2
EL10Ac2g03385 Beta vulgaris HOM05D002131 ORTHO05D002141 5.4e-16 88.6 77 63.6
THA.LOC104805417 Tarenaya hassleriana HOM05D002131 ORTHO05D002141 5.4e-16 88.6 89 57.3
CARHR279110 Cardamine hirsuta HOM05D002131 ORTHO05D002141 7.8e-15 84.7 82 56.1
Cfa019069 Carpinus fangiana HOM05D002131 ORTHO05D002141 1.3e-14 84.0 288 30.2
Haze_07440 Corylus avellana HOM05D002131 ORTHO05D002141 5.0e-14 82.0 288 30.2
Thhalv10003938m.g Eutrema salsugineum HOM05D002131 ORTHO05D002141 2.5e-13 79.7 77 57.1
AL8G42720 Arabidopsis lyrata HOM05D002131 ORTHO05D002141 4.3e-13 79.0 77 55.8
AT5G65200 Arabidopsis thaliana HOM05D002131 ORTHO05D002141 4.3e-13 79.0 77 55.8
Carub.0008s2604 Capsella rubella HOM05D002131 ORTHO05D002141 4.3e-13 79.0 77 54.5
Hund12522 Selenicereus undatus HOM05D002131 ORTHO05D002141 5.6e-13 78.6 73 60.3
Sc06g0002590 Simmondsia chinensis HOM05D002131 ORTHO05D002141 5.6e-13 78.6 173 38.7
BraA02t09175Z Brassica rapa HOM05D002131 ORTHO05D002141 7.3e-13 78.2 89 50.6
Sp2g28280 Schrenkiella parvula HOM05D002131 ORTHO05D002141 7.3e-13 78.2 82 54.9
QL10p012420 Quercus lobata HOM05D002131 ORTHO05D002141 1.6e-12 77.0 288 31.9
Sabra17G0059900 Salix brachista HOM05D002131 ORTHO05D002141 2.1e-12 76.6 86 55.8
CiPaw.11G031500 Carya illinoinensis HOM05D002131 ORTHO05D002141 3.6e-12 75.9 288 31.6
C09p08650 Brassica napus HOM05D002131 ORTHO05D002141 8.0e-12 74.7 89 49.4
FAN16G2539 Fragaria x ananassa HOM05D002131 ORTHO05D002141 8.0e-12 74.7 152 40.1
Aa31LG4G16470 Aethionema arabicum HOM05D002131 ORTHO05D002141 1.4e-11 73.9 77 50.6
A09p07750 Brassica napus HOM05D002131 ORTHO05D002141 1.4e-11 73.9 89 47.2
BraA09t36423Z Brassica rapa HOM05D002131 ORTHO05D002141 1.4e-11 73.9 89 47.2
A06p19830 Brassica napus HOM05D002131 ORTHO05D002141 2.3e-11 73.2 125 40.8
BraA06t25061Z Brassica rapa HOM05D002131 ORTHO05D002141 2.3e-11 73.2 125 40.8
Carub.0005s1393 Capsella rubella HOM05D002131 ORTHO05D002141 4.0e-11 72.4 125 40.8
AT3G47820 Arabidopsis thaliana HOM05D002131 ORTHO05D002141 5.2e-11 72.0 125 40.8
AL5G27110 Arabidopsis lyrata HOM05D002131 ORTHO05D002141 6.8e-11 71.6 125 40.0
BcaC01g01773 Brassica carinata HOM05D002131 ORTHO05D002141 6.8e-11 71.6 125 40.0
C03p72040 Brassica napus HOM05D002131 ORTHO05D002141 6.8e-11 71.6 125 40.0
BolC3t19503H Brassica oleracea HOM05D002131 ORTHO05D002141 6.8e-11 71.6 125 40.0
BcaB01g00873 Brassica carinata HOM05D002131 ORTHO05D002141 8.9e-11 71.2 125 40.0
MD13G1198500 Malus domestica HOM05D002131 ORTHO05D002141 8.9e-11 71.2 146 39.0
CARHR156500 Cardamine hirsuta HOM05D002131 ORTHO05D002141 1.5e-10 70.5 125 40.0
Sp5g14140 Schrenkiella parvula HOM05D002131 ORTHO05D002141 2.0e-10 70.1 125 40.8
Thhalv10010295m.g Eutrema salsugineum HOM05D002131 ORTHO05D002141 2.6e-10 69.7 125 39.2
Manes.06G100900 Manihot esculenta HOM05D002131 ORTHO05D002141 9.8e-10 67.8 293 29.0
THA.LOC104809257 Tarenaya hassleriana HOM05D002131 ORTHO05D002141 2.2e-09 66.6 89 46.1
A02p43740 Brassica napus HOM05D002131 ORTHO05D002141 2.9e-09 66.2 69 55.1
C02p63880 Brassica napus HOM05D002131 ORTHO05D002141 2.9e-09 66.2 69 55.1
BraA02t09298Z Brassica rapa HOM05D002131 ORTHO05D002141 2.9e-09 66.2 69 55.1
BcaC03g18317 Brassica carinata HOM05D002131 ORTHO05D002141 3.7e-09 65.9 69 53.6
BcaB02g09163 Brassica carinata HOM05D002131 ORTHO05D002141 8.3e-09 64.7 73 47.9
Peaxi162Scf00700g00630 Petunia axillaris HOM05D002131 ORTHO05D002141 1.4e-08 63.9 65 53.8
BcaB06g27218 Brassica carinata HOM05D002131 ORTHO05D002141 3.2e-08 62.8 73 46.6
BcaC06g35610 Brassica carinata HOM05D002131 ORTHO05D002141 3.2e-08 62.8 73 46.6
CiPaw.12G023300 Carya illinoinensis HOM05D002131 ORTHO05D002141 5.4e-08 62.0 288 27.8
Duzib068G0980 Durio zibethinus HOM05D002131 ORTHO05D002141 7.0e-08 61.6 291 27.8
BcaB07g29848 Brassica carinata HOM05D002131 ORTHO05D002141 9.2e-08 61.2 76 48.7
FAN25G1503 Fragaria x ananassa HOM05D002131 ORTHO05D002141 9.2e-08 61.2 81 46.9
Hma1.2p1_0002F.1_g002790 Hydrangea macrophylla HOM05D002131 ORTHO05D002141 1.2e-07 60.8 291 27.8
Phvul.009G181600 Phaseolus vulgaris HOM05D002131 ORTHO05D002141 1.2e-07 60.8 288 27.8
Potri.015G071200 Populus trichocarpa HOM05D002131 ORTHO05D002141 1.2e-07 60.8 291 27.1
TWI60G0942 Tripterygium wilfordii HOM05D002131 ORTHO05D002141 1.6e-07 60.5 147 36.1
Ciclev10019643m.g Citrus clementina HOM05D002131 ORTHO05D002141 2.7e-07 59.7 160 35.0
Potri.012G076400 Populus trichocarpa HOM05D002131 ORTHO05D002141 2.7e-07 59.7 288 28.1
Sed0002427 Sechium edule HOM05D002131 ORTHO05D002141 3.5e-07 59.3 34 79.4
DCAR_000285 Daucus carota HOM05D002131 ORTHO05D002141 7.8e-07 58.2 272 26.8
BcaC02g12503 Brassica carinata HOM05D002131 ORTHO05D002141 1.0e-06 57.8 72 43.1
BcaC03g18313 Brassica carinata HOM05D002131 ORTHO05D002141 1.0e-06 57.8 123 36.6
MELO3C033545.2 Cucumis melo HOM05D002131 ORTHO05D002141 1.0e-06 57.8 287 26.1
BcaNung01391 Brassica carinata HOM05D002131 ORTHO05D002141 1.3e-06 57.4 77 44.2
Dinv20696 Davidia involucrata HOM05D002131 ORTHO05D002141 2.3e-06 56.6 37 73.0
Duzib205G0953 Durio zibethinus HOM05D002131 ORTHO05D002141 2.3e-06 56.6 292 28.1
TWI15G0958 Tripterygium wilfordii HOM05D002131 ORTHO05D002141 2.3e-06 56.6 289 27.7
Nn4g22910 Nelumbo nucifera HOM05D002131 ORTHO05D002141 3.0e-06 56.2 280 25.4
VMungo1309G0204 Vigna mungo HOM05D002131 ORTHO05D002141 3.0e-06 56.2 289 27.0
Eucgr.K02878 Eucalyptus grandis HOM05D002131 ORTHO05D002141 5.0e-06 55.5 52 63.5
TPR.G31466 Trifolium pratense HOM05D002131 ORTHO05D002141 5.0e-06 55.5 42 71.4
MELO3C017121.2 Cucumis melo HOM05D002131 ORTHO05D002141 8.6e-06 54.7 287 25.8


User provided reference genes

Program Settings