Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0964 Fragaria x ananassa HOM05D003389 ORTHO05D003917 0.0e+00 1418.3 716 100.0
FAN09G4798 Fragaria x ananassa HOM05D003389 ORTHO05D003917 0.0e+00 1320.1 696 97.0
FAN09G1540 Fragaria x ananassa HOM05D003389 ORTHO05D003917 0.0e+00 1271.9 696 94.3
FAN13G0159 Fragaria x ananassa HOM05D003389 ORTHO05D003917 7.5e-186 654.8 494 74.9
FAN04G3242 Fragaria x ananassa HOM05D003389 ORTHO05D003917 2.2e-185 653.3 494 75.1
FAN08G2451 Fragaria x ananassa HOM05D003389 ORTHO05D003917 1.2e-180 637.5 494 73.7
FvH4_5g01250 Fragaria vesca HOM05D003389 ORTHO05D003917 1.4e-179 634.0 494 73.5
FAN18G0817 Fragaria x ananassa HOM05D003389 ORTHO05D003917 3.0e-179 632.9 494 73.5
RcHm_v2.0_Chr7g0199771 Rosa chinensis HOM05D003389 ORTHO05D003917 2.5e-165 586.6 497 69.0
MD06G1071200 Malus domestica HOM05D003389 ORTHO05D003917 9.0e-123 445.3 500 56.0
Prupe.5G088000 Prunus persica HOM05D003389 ORTHO05D003917 6.5e-121 439.1 500 56.2
MD04G1069800 Malus domestica HOM05D003389 ORTHO05D003917 3.0e-118 430.3 528 54.4
Cfa012079 Carpinus fangiana HOM05D003389 ORTHO05D003917 1.8e-91 341.3 507 47.7
Haze_08980 Corylus avellana HOM05D003389 ORTHO05D003917 1.6e-90 338.2 505 47.1
CANSAT21G1884 Cannabis sativa HOM05D003389 ORTHO05D003917 1.7e-89 334.7 504 47.4
Dinv37703 Davidia involucrata HOM05D003389 ORTHO05D003917 5.5e-88 329.7 505 46.7
Sabra01G0085800 Salix brachista HOM05D003389 ORTHO05D003917 1.2e-87 328.6 503 44.9
Dinv39033 Davidia involucrata HOM05D003389 ORTHO05D003917 1.8e-86 324.7 503 45.7
Thecc.03G268500 Theobroma cacao HOM05D003389 ORTHO05D003917 4.0e-86 323.6 509 46.0
QL12p016621 Quercus lobata HOM05D003389 ORTHO05D003917 1.5e-85 321.6 502 45.0
COL.COLO4_23793 Corchorus olitorius HOM05D003389 ORTHO05D003917 7.5e-85 319.3 513 45.2
Potri.001G112300 Populus trichocarpa HOM05D003389 ORTHO05D003917 6.3e-84 316.2 500 44.2
CiPaw.11G142600 Carya illinoinensis HOM05D003389 ORTHO05D003917 8.2e-84 315.8 503 44.9
Potri.003G119800 Populus trichocarpa HOM05D003389 ORTHO05D003917 3.5e-82 310.5 502 44.4
Manes.02G030300 Manihot esculenta HOM05D003389 ORTHO05D003917 5.9e-82 309.7 518 43.1
Medtr5g011090 Medicago truncatula HOM05D003389 ORTHO05D003917 5.9e-82 309.7 535 43.2
Ciclev10019075m.g Citrus clementina HOM05D003389 ORTHO05D003917 1.7e-81 308.1 505 42.6
Gohir.A08G177400 Gossypium hirsutum HOM05D003389 ORTHO05D003917 1.5e-80 305.1 510 43.7
Gohir.D08G195800 Gossypium hirsutum HOM05D003389 ORTHO05D003917 2.5e-80 304.3 510 44.1
Psat2g181120 Pisum sativum HOM05D003389 ORTHO05D003917 2.7e-79 300.8 531 42.9
CiPaw.12G100200 Carya illinoinensis HOM05D003389 ORTHO05D003917 1.0e-78 298.9 496 44.0
TPR.G19581 Trifolium pratense HOM05D003389 ORTHO05D003917 3.0e-78 297.4 500 43.4
Gorai.004G206500 Gossypium raimondii HOM05D003389 ORTHO05D003917 2.0e-77 294.7 524 42.9
CSS0044016 Camellia sinensis var. sinensis HOM05D003389 ORTHO05D003917 7.5e-77 292.7 502 42.6
Duzib068G0926 Durio zibethinus HOM05D003389 ORTHO05D003917 8.3e-76 289.3 510 43.3
Lj2g0004762 Lotus japonicus HOM05D003389 ORTHO05D003917 1.1e-75 288.9 506 43.1
Sc07g0009480 Simmondsia chinensis HOM05D003389 ORTHO05D003917 2.4e-75 287.7 531 41.1
Duzib084G0706 Durio zibethinus HOM05D003389 ORTHO05D003917 9.1e-75 285.8 508 43.3
VMungo1215G1985 Vigna mungo HOM05D003389 ORTHO05D003917 1.2e-74 285.4 532 42.1
EL10Ac5g12710 Beta vulgaris HOM05D003389 ORTHO05D003917 1.6e-74 285.0 523 40.5
Ca_06667_v3 Cicer arietinum L. HOM05D003389 ORTHO05D003917 2.7e-74 284.3 530 41.7
Manes.01G069600 Manihot esculenta HOM05D003389 ORTHO05D003917 2.7e-74 284.3 513 42.5
Actinidia05234 Actinidia chinensis HOM05D003389 ORTHO05D003917 5.9e-74 283.1 504 40.9
arahy.Tifrunner.gnm1.ann1.HGX6IC Arachis hypogaea HOM05D003389 ORTHO05D003917 7.7e-74 282.7 527 40.0
Gohir.A09G193500 Gossypium hirsutum HOM05D003389 ORTHO05D003917 1.0e-73 282.3 534 42.5
Nn1g01292 Nelumbo nucifera HOM05D003389 ORTHO05D003917 1.0e-73 282.3 509 43.8
Sabra03G0084000 Salix brachista HOM05D003389 ORTHO05D003917 1.0e-73 282.3 502 41.6
Gorai.006G210500 Gossypium raimondii HOM05D003389 ORTHO05D003917 1.3e-73 282.0 508 43.7
Phvul.002G153200 Phaseolus vulgaris HOM05D003389 ORTHO05D003917 2.9e-73 280.8 531 42.6
Nn6g34315 Nelumbo nucifera HOM05D003389 ORTHO05D003917 8.5e-73 279.3 509 41.8
Lj2C201G3 Lonicera japonica HOM05D003389 ORTHO05D003917 3.2e-72 277.3 501 42.7
Glyma.01G214700 Glycine max HOM05D003389 ORTHO05D003917 4.2e-72 276.9 509 43.0
Gohir.D09G187700 Gossypium hirsutum HOM05D003389 ORTHO05D003917 1.6e-71 275.0 512 42.6
PGR031G2775 Punica granatum HOM05D003389 ORTHO05D003917 1.6e-71 275.0 511 41.3
arahy.Tifrunner.gnm1.ann1.18T4MA Arachis hypogaea HOM05D003389 ORTHO05D003917 2.8e-71 274.2 527 40.0
TAR636G0614 Trochodendron aralioides HOM05D003389 ORTHO05D003917 3.6e-71 273.9 525 41.1
Duzib205G0992 Durio zibethinus HOM05D003389 ORTHO05D003917 4.7e-71 273.5 543 40.5
Atru.chr9.1507 Acer truncatum HOM05D003389 ORTHO05D003917 6.1e-71 273.1 507 40.0
Lalb_Chr09g0324691 Lupinus albus HOM05D003389 ORTHO05D003917 1.4e-70 271.9 533 40.2
Cpa.g.sc29.32 Carica papaya HOM05D003389 ORTHO05D003917 5.2e-70 270.0 523 40.7
Gohir.A11G021100 Gossypium hirsutum HOM05D003389 ORTHO05D003917 6.8e-70 269.6 507 42.0
CSS0021110 Camellia sinensis var. sinensis HOM05D003389 ORTHO05D003917 1.5e-69 268.5 515 41.2
vmacro00214 Vaccinium macrocarpon HOM05D003389 ORTHO05D003917 5.7e-69 266.5 502 42.0
Glyma.11G027200 Glycine max HOM05D003389 ORTHO05D003917 9.8e-69 265.8 516 43.0
Sed0023838 Sechium edule HOM05D003389 ORTHO05D003917 1.7e-68 265.0 504 40.5
Lj2C200G2 Lonicera japonica HOM05D003389 ORTHO05D003917 2.8e-68 264.2 464 42.9
TWI81G0612 Tripterygium wilfordii HOM05D003389 ORTHO05D003917 1.4e-67 261.9 500 39.4
Sed0009929 Sechium edule HOM05D003389 ORTHO05D003917 2.4e-67 261.2 512 40.4
TWI15G1193 Tripterygium wilfordii HOM05D003389 ORTHO05D003917 2.4e-67 261.2 509 40.3
TAR636G1874 Trochodendron aralioides HOM05D003389 ORTHO05D003917 5.4e-67 260.0 517 40.6
Gohir.D11G020800 Gossypium hirsutum HOM05D003389 ORTHO05D003917 7.0e-67 259.6 510 40.8
DCAR_008431 Daucus carota HOM05D003389 ORTHO05D003917 9.2e-67 259.2 512 39.5
Gorai.007G022100 Gossypium raimondii HOM05D003389 ORTHO05D003917 9.2e-67 259.2 510 40.6
GSVIVG01019881001 Vitis vinifera HOM05D003389 ORTHO05D003917 4.5e-66 256.9 499 38.7
CsaV3_5G003350 Cucumis sativus L. HOM05D003389 ORTHO05D003917 1.3e-65 255.4 514 40.9
Nitab4.5_0008362g0010 Nicotiana tabacum HOM05D003389 ORTHO05D003917 1.7e-65 255.0 505 39.4
Nitab4.5_0001714g0090 Nicotiana tabacum HOM05D003389 ORTHO05D003917 5.0e-65 253.4 503 38.8
Cc08_g13790 Coffea canephora HOM05D003389 ORTHO05D003917 1.1e-64 252.3 518 38.8
MBI11_g05095_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D003917 1.1e-64 252.3 530 39.2
Lsat_1_v5_gn_6_10400 Lactuca sativa HOM05D003389 ORTHO05D003917 2.5e-64 251.1 493 38.5
Peaxi162Scf00620g00617 Petunia axillaris HOM05D003389 ORTHO05D003917 7.3e-64 249.6 500 40.0
DCAR_006771 Daucus carota HOM05D000526 ORTHO05D003917 2.1e-63 248.1 538 37.7
Sopen08g028470 Solanum pennellii HOM05D003389 ORTHO05D003917 2.1e-63 248.1 498 39.0
Rhsim11G0008000 Rhododendron simsii HOM05D003389 ORTHO05D003917 8.0e-63 246.1 505 40.4
Aqoxy5G03952 Aquilegia oxysepala HOM05D003389 ORTHO05D003917 1.4e-62 245.4 517 37.3
MELO3C005619.2 Cucumis melo HOM05D003389 ORTHO05D003917 1.8e-62 245.0 518 40.2
PGSC0003DMG400022735 Solanum tuberosum HOM05D003389 ORTHO05D003917 2.3e-62 244.6 497 38.6
ClCG01G003270 Citrullus lanatus HOM05D003389 ORTHO05D003917 1.5e-61 241.9 511 38.6
SalBow6G3358 Salvia bowleyana HOM05D003389 ORTHO05D003917 1.5e-61 241.9 530 36.4
Hund11535 Selenicereus undatus HOM05D003389 ORTHO05D003917 7.5e-61 239.6 500 38.8
AUR62010575 Chenopodium quinoa HOM05D003389 ORTHO05D003917 6.4e-60 236.5 497 37.6
Oeu001902.1 Olea europaea HOM05D003389 ORTHO05D003917 6.4e-60 236.5 502 38.2
Ah.12g057800 Amaranthus hybridus HOM05D003389 ORTHO05D003917 8.3e-60 236.1 526 38.4
CDE12G0302 Ceratophyllum demersum HOM05D003389 ORTHO05D003917 2.7e-58 231.1 506 37.7
CAN.G981.56 Capsicum annuum HOM05D003389 ORTHO05D003917 4.6e-58 230.3 509 37.3
ECA233G2019 Erigeron canadensis HOM05D003389 ORTHO05D003917 4.6e-58 230.3 507 36.9
Lj8A241G19 Lonicera japonica HOM05D003389 ORTHO05D003917 7.8e-58 229.6 502 36.5
Hma1.2p1_0138F.1_g062730 Hydrangea macrophylla HOM05D003389 ORTHO05D003917 5.0e-57 226.9 543 37.2
SGA_v2.0_scaffold286G47125 Striga asiatica HOM05D003389 ORTHO05D003917 5.0e-57 226.9 495 36.2
SGA_v2.0_scaffold144G35980 Striga asiatica HOM05D003389 ORTHO05D003917 5.6e-56 223.4 501 35.9
CDE04G0877 Ceratophyllum demersum HOM05D003389 ORTHO05D003917 9.5e-56 222.6 500 36.2
PSO478G1498 Papaver somniferum HOM05D003389 ORTHO05D003917 3.6e-55 220.7 512 36.1
Migut.E01161 Erythranthe guttata HOM05D003389 ORTHO05D003917 2.3e-54 218.0 498 36.7
Eucgr.D01938 Eucalyptus grandis HOM05D003389 ORTHO05D003917 2.3e-54 218.0 506 36.8
PSO782G1906 Papaver somniferum HOM05D003389 ORTHO05D003917 1.5e-53 215.3 513 35.3
HanXRQChr11g0336621 Helianthus annuus HOM05D003389 ORTHO05D003917 4.4e-53 213.8 518 36.5
THA.LOC104806361 Tarenaya hassleriana HOM05D003389 ORTHO05D003917 7.5e-53 213.0 531 36.9
Thhalv10028490m.g Eutrema salsugineum HOM05D003389 ORTHO05D003917 4.9e-52 210.3 506 36.4
BcaB01g01683 Brassica carinata HOM05D003389 ORTHO05D003917 1.1e-51 209.1 501 36.1
unitig_699.g19759 Utricularia gibba HOM05D003389 ORTHO05D003917 2.4e-51 208.0 521 34.7
CARHR254440 Cardamine hirsuta HOM05D003389 ORTHO05D003917 5.4e-51 206.8 503 35.6
ATR0661G488 Amborella trichopoda HOM05D003389 ORTHO05D003917 7.0e-51 206.5 533 34.9
Sp6g05610 Schrenkiella parvula HOM05D003389 ORTHO05D003917 9.2e-51 206.1 500 35.0
BraA09t38293Z Brassica rapa HOM05D003389 ORTHO05D003917 1.2e-50 205.7 499 34.7
A09p27250 Brassica napus HOM05D003389 ORTHO05D003917 3.5e-50 204.1 499 35.7
AT4G11860 Arabidopsis thaliana HOM05D003389 ORTHO05D003917 1.0e-49 202.6 506 35.2
Carub.0006s3095 Capsella rubella HOM05D003389 ORTHO05D003917 2.3e-49 201.4 510 35.7
SHI13491 Sapria himalayana HOM05D003389 ORTHO05D003917 4.7e-47 193.7 532 34.4
Aa31LG9G10590 Aethionema arabicum HOM05D003389 ORTHO05D003917 8.1e-47 193.0 515 35.1
Zm00001eb227790 Zea mays HOM05D003389 ORTHO05D003917 8.1e-47 193.0 513 33.3
THA.LOC104814202 Tarenaya hassleriana HOM05D003389 ORTHO05D003917 1.1e-46 192.6 509 36.5
BcaC04g21168 Brassica carinata HOM05D003389 ORTHO05D003917 1.8e-46 191.8 497 35.2
C09p34580 Brassica napus HOM05D003389 ORTHO05D003917 1.8e-46 191.8 497 35.2
BolC9t56305H Brassica oleracea HOM05D003389 ORTHO05D003917 1.8e-46 191.8 497 35.2
Hund14708 Selenicereus undatus HOM05D003389 ORTHO05D003917 1.8e-46 191.8 496 35.5
Actinidia14499 Actinidia chinensis HOM05D003389 ORTHO05D003917 4.0e-46 190.7 503 35.0
HPP92_022000 Vanilla planifolia HOM05D003389 ORTHO05D003917 5.2e-46 190.3 493 33.5
SEGI_34401 Sequoiadendron giganteum HOM05D003389 ORTHO05D003917 9.9e-45 186.0 533 35.1
Lalb_Chr16g0379951 Lupinus albus HOM05D003389 ORTHO05D003917 8.3e-44 183.0 388 38.1
Os06g0712400 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D003917 3.2e-43 181.0 503 33.4
Lalb_Chr05g0214741 Lupinus albus HOM05D003389 ORTHO05D003917 1.3e-41 175.6 222 51.8
SalBow1G6995 Salvia bowleyana HOM05D003262 ORTHO05D003917 3.1e-38 164.5 463 31.7
ECA240G1577 Erigeron canadensis HOM05D003389 ORTHO05D003917 1.2e-37 162.5 498 32.1
AUR62017315 Chenopodium quinoa HOM05D003389 ORTHO05D003917 1.5e-37 162.2 495 31.7
TAR636G1472 Trochodendron aralioides HOM05D003389 ORTHO05D003917 3.4e-37 161.0 426 34.0
C01p17500 Brassica napus HOM05D003389 ORTHO05D003917 7.3e-32 143.3 520 29.4
BcaC09g51049 Brassica carinata HOM05D003389 ORTHO05D003917 1.6e-31 142.1 520 29.2
BolC1t01690H Brassica oleracea HOM05D003389 ORTHO05D003917 1.6e-31 142.1 520 29.2
A01p14230 Brassica napus HOM05D003389 ORTHO05D003917 2.1e-31 141.7 521 29.8
BraA01t01370Z Brassica rapa HOM05D003389 ORTHO05D003917 8.1e-31 139.8 506 30.4
RcHm_v2.0_Chr1g0379891 Rosa chinensis HOM05D003389 ORTHO05D003917 5.2e-30 137.1 498 30.9
Mapoly0108s0010 Marchantia polymorpha HOM05D003389 ORTHO05D003917 1.7e-28 132.1 599 29.5
Zm00001eb272510 Zea mays HOM05D003389 ORTHO05D003917 1.4e-27 129.0 260 37.3
Sp7g21050 Schrenkiella parvula HOM05D003389 ORTHO05D003917 1.2e-26 125.9 495 29.1
AagrBONN_evm.TU.Sc2ySwM_228.3893 Anthoceros agrestis HOM05D003389 ORTHO05D003917 2.1e-26 125.2 615 29.8
BcaNung01008 Brassica carinata HOM05D003389 ORTHO05D003917 6.6e-25 120.2 530 29.4
Thhalv10027519m.g Eutrema salsugineum HOM05D003389 ORTHO05D003917 4.8e-23 114.0 529 28.4
Glyma.11G000066 Glycine max HOM05D003389 ORTHO05D003917 1.5e-21 109.0 187 44.9
MBI04_g06622_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D003917 1.5e-21 109.0 510 28.0
Migut.A00905 Erythranthe guttata HOM05D003389 ORTHO05D003917 2.6e-21 108.2 224 35.7
Glyma.04G257602 Glycine max HOM05D003389 ORTHO05D003917 1.3e-20 105.9 139 51.8
SMO367G0360 Selaginella moellendorffii HOM05D003389 ORTHO05D003917 1.3e-20 105.9 520 26.7
Glyma.11G000132 Glycine max HOM05D003389 ORTHO05D003917 3.8e-20 104.4 139 51.8
Glyma.03G264902 Glycine max HOM05D003389 ORTHO05D003917 8.4e-20 103.2 139 51.8
Pp3c12_2860 Physcomitrium patens HOM05D003389 ORTHO05D003917 2.4e-19 101.7 563 28.8
Aa31LG6G5010 Aethionema arabicum HOM05D003389 ORTHO05D003917 1.2e-18 99.4 454 27.8
Migut.A00906 Erythranthe guttata HOM05D003389 ORTHO05D003917 4.6e-18 97.4 272 30.1
HanXRQChr02g0043491 Helianthus annuus HOM05D003389 ORTHO05D003917 7.9e-18 96.7 176 38.6
CBR_g38139 Chara braunii HOM05D003389 ORTHO05D003917 1.0e-17 96.3 177 39.5
Glyma.03G265002 Glycine max HOM05D003389 ORTHO05D003917 1.3e-17 95.9 192 41.7
AL7G30560 Arabidopsis lyrata HOM05D003389 ORTHO05D003917 1.8e-17 95.5 504 26.4
PSO170G2389 Papaver somniferum HOM05D003389 ORTHO05D003917 3.0e-17 94.7 164 40.9
PSO302G0081 Papaver somniferum HOM05D003389 ORTHO05D003917 1.1e-16 92.8 164 40.9
Pp3c17_3230 Physcomitrium patens HOM05D003389 ORTHO05D003917 2.5e-16 91.7 566 28.3
Eucgr.D01936 Eucalyptus grandis HOM05D003389 ORTHO05D003917 7.4e-16 90.1 149 36.2
HanXRQChr02g0043501 Helianthus annuus HOM05D003389 ORTHO05D003917 7.4e-16 90.1 99 50.5
Carub.0007s1831 Capsella rubella HOM05D003389 ORTHO05D003917 2.1e-15 88.6 144 39.6
Eucgr.D01937 Eucalyptus grandis HOM05D003389 ORTHO05D003917 1.2e-13 82.8 148 33.8
AT4G22960 Arabidopsis thaliana HOM05D003389 ORTHO05D003917 2.4e-11 75.1 164 33.5
BcaB01g02667 Brassica carinata HOM05D003389 ORTHO05D003917 2.1e-10 72.0 79 53.2
Lsat_1_v5_gn_6_79100 Lactuca sativa HOM05D003389 ORTHO05D003917 1.8e-09 68.9 70 50.0
Cre06.g304850 Chlamydomonas reinhardtii HOM05D003389 ORTHO05D003917 1.9e-08 65.5 149 34.9
DCAR_022883 Daucus carota HOM05D064377 ORTHO05D003917 3.3e-08 64.7 65 50.8
AagrBONN_evm.TU.Sc2ySwM_362.1756 Anthoceros agrestis HOM05D003389 ORTHO05D003917 5.6e-08 63.9 144 34.7
MBI18_g34832_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D003917 1.6e-07 62.4 125 36.8
PRCOL_00006333 Prasinoderma coloniale HOM05D003389 ORTHO05D003917 8.2e-07 60.1 113 36.3
MCO06G239 Micromonas commoda HOM05D003389 ORTHO05D003917 3.1e-06 58.2 90 43.3
MBI17_g18368_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D244494 6.9e-06 57.0 31 74.2


User provided reference genes

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