Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0897 Fragaria x ananassa HOM05D004233 ORTHO05D003507 1.7e-67 259.2 134 100.0
FvH4_6g11920 Fragaria vesca HOM05D004233 ORTHO05D003507 1.5e-66 256.1 134 98.5
FAN14G3430 Fragaria x ananassa HOM05D004233 ORTHO05D003507 1.5e-66 256.1 134 98.5
FAN14G4547 Fragaria x ananassa HOM05D004233 ORTHO05D003507 1.5e-66 256.1 134 98.5
FAN02G0664 Fragaria x ananassa HOM05D004233 ORTHO05D003507 5.5e-66 254.2 134 97.8
FAN05G3657 Fragaria x ananassa HOM05D004233 ORTHO05D003507 4.7e-65 251.1 134 96.3
RcHm_v2.0_Chr3g0463681 Rosa chinensis HOM05D004233 ORTHO05D003507 4.2e-58 228.0 132 90.9
Prupe.6G271900 Prunus persica HOM05D004233 ORTHO05D003507 1.9e-42 176.0 140 71.4
MD12G1161500 Malus domestica HOM05D004233 ORTHO05D003507 1.2e-36 156.8 135 65.2
QL07p036016 Quercus lobata HOM05D004233 ORTHO05D003507 1.2e-31 140.2 136 61.0
Cfa017246 Carpinus fangiana HOM05D004233 ORTHO05D003507 2.6e-31 139.0 138 61.6
CiPaw.09G207200 Carya illinoinensis HOM05D004233 ORTHO05D003507 3.7e-30 135.2 137 59.9
Manes.09G103100 Manihot esculenta HOM05D004233 ORTHO05D003507 1.7e-27 126.3 137 54.7
Potri.006G097700 Populus trichocarpa HOM05D004233 ORTHO05D003507 8.6e-27 124.0 133 56.4
Potri.016G112700 Populus trichocarpa HOM05D004233 ORTHO05D003507 3.3e-26 122.1 134 54.5
Hma1.2p1_0763F.1_g214800 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 2.1e-25 119.4 134 56.7
Phvul.010G005000 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 6.2e-25 117.9 134 52.2
Sabra16G0108400 Salix brachista HOM05D004233 ORTHO05D003507 6.2e-25 117.9 134 53.0
Duzib128G0556 Durio zibethinus HOM05D004233 ORTHO05D003507 1.4e-24 116.7 138 52.2
Sabra06G0075200 Salix brachista HOM05D004233 ORTHO05D003507 1.4e-24 116.7 133 54.1
Ciclev10013109m.g Citrus clementina HOM05D004233 ORTHO05D003507 2.3e-24 115.9 134 52.2
Duzib093G0978 Durio zibethinus HOM05D004233 ORTHO05D003507 4.0e-24 115.2 138 51.4
ClCG10G021920 Citrullus lanatus HOM05D004233 ORTHO05D003507 5.2e-24 114.8 135 57.8
Glyma.03G078400 Glycine max HOM05D004233 ORTHO05D003507 5.2e-24 114.8 136 52.2
VMungo0331G0885 Vigna mungo HOM05D004233 ORTHO05D003507 5.2e-24 114.8 136 50.7
Gohir.D09G159300 Gossypium hirsutum HOM05D004233 ORTHO05D003507 8.9e-24 114.0 139 51.8
Gorai.006G181000 Gossypium raimondii HOM05D004233 ORTHO05D003507 8.9e-24 114.0 139 51.8
Gohir.A09G163800 Gossypium hirsutum HOM05D004233 ORTHO05D003507 4.4e-23 111.7 139 51.1
COL.COLO4_14571 Corchorus olitorius HOM05D004233 ORTHO05D003507 9.8e-23 110.5 143 49.7
Glyma.01G113100 Glycine max HOM05D004233 ORTHO05D003507 1.3e-22 110.2 137 50.4
Duzib106G0630 Durio zibethinus HOM05D004233 ORTHO05D003507 1.7e-22 109.8 138 50.7
TWI77G0758 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 1.7e-22 109.8 134 52.2
MELO3C009185.2 Cucumis melo HOM05D004233 ORTHO05D003507 3.7e-22 108.6 135 54.1
TAR623G0525 Trochodendron aralioides HOM05D004233 ORTHO05D003507 4.9e-22 108.2 137 49.6
Sed0017480 Sechium edule HOM05D004233 ORTHO05D003507 1.1e-21 107.1 133 55.6
Eucgr.K02995 Eucalyptus grandis HOM05D004233 ORTHO05D003507 1.4e-21 106.7 136 48.5
Thecc.05G020400 Theobroma cacao HOM05D004233 ORTHO05D003507 1.4e-21 106.7 142 51.4
Sed0021305 Sechium edule HOM05D004233 ORTHO05D003507 2.4e-21 105.9 136 54.4
Dinv37074 Davidia involucrata HOM05D004233 ORTHO05D003507 3.2e-21 105.5 123 53.7
Oeu030524.1 Olea europaea HOM05D004233 ORTHO05D003507 7.1e-21 104.4 128 48.4
Nn2g13635 Nelumbo nucifera HOM05D004233 ORTHO05D003507 2.1e-20 102.8 138 50.0
TAR369G1066 Trochodendron aralioides HOM05D004233 ORTHO05D003507 2.7e-20 102.4 135 49.6
Rhsim04G0131700 Rhododendron simsii HOM05D004233 ORTHO05D003507 1.3e-19 100.1 135 49.6
Phvul.008G106800 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 2.3e-19 99.4 136 52.9
Phvul.006G186000 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 3.9e-19 98.6 130 51.5
Glyma.07G146500 Glycine max HOM05D004233 ORTHO05D003507 6.6e-19 97.8 135 51.9
Glyma.15G073400 Glycine max HOM05D004233 ORTHO05D003507 8.6e-19 97.4 127 52.0
VMungo1383G3137 Vigna mungo HOM05D004233 ORTHO05D003507 1.1e-18 97.1 139 51.1
Oeu024626.1 Olea europaea HOM05D004233 ORTHO05D003507 1.5e-18 96.7 128 46.9
PGR004G1616 Punica granatum HOM05D004233 ORTHO05D003507 2.5e-18 95.9 141 46.8
Glyma.18G197700 Glycine max HOM05D004233 ORTHO05D003507 3.3e-18 95.5 135 51.9
Glyma.13G239800 Glycine max HOM05D004233 ORTHO05D003507 5.6e-18 94.7 127 51.2
CsaV3_3G034080 Cucumis sativus L. HOM05D004233 ORTHO05D003507 1.2e-17 93.6 135 48.9
Atru.chr8.2208 Acer truncatum HOM05D004233 ORTHO05D003507 3.6e-17 92.0 101 55.4
Medtr2g013470 Medicago truncatula HOM05D004233 ORTHO05D003507 3.6e-17 92.0 130 49.2
CANSAT35G0502 Cannabis sativa HOM05D004233 ORTHO05D003507 8.1e-17 90.9 157 43.9
Aqoxy4G02651 Aquilegia oxysepala HOM05D004233 ORTHO05D003507 1.4e-16 90.1 135 45.2
Cpa.g.sc163.4 Carica papaya HOM05D004233 ORTHO05D003507 5.2e-16 88.2 124 49.2
MSTRG.10228 Avicennia marina HOM05D004233 ORTHO05D003507 2.0e-15 86.3 134 44.8
Oeu055173.1 Olea europaea HOM05D004233 ORTHO05D003507 2.6e-15 85.9 108 47.2
Ca_00329_v3 Cicer arietinum L. HOM05D004233 ORTHO05D003507 4.9e-14 81.6 126 45.2
Gohir.A01G225900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 4.9e-14 81.6 78 61.5
Gohir.D01G215600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 8.4e-14 80.9 78 60.3
Gorai.002G261800 Gossypium raimondii HOM05D004233 ORTHO05D003507 8.4e-14 80.9 78 60.3
Medtr7g067365 Medicago truncatula HOM05D004233 ORTHO05D003507 8.4e-14 80.9 125 47.2
Nn1g02891 Nelumbo nucifera HOM05D004233 ORTHO05D003507 8.4e-14 80.9 113 47.8
TPR.G29052 Trifolium pratense HOM05D004233 ORTHO05D003507 1.1e-13 80.5 125 46.4
MBI06_g42853_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 1.4e-13 80.1 134 40.3
Psat3g130680 Pisum sativum HOM05D004233 ORTHO05D003507 3.2e-13 79.0 125 45.6
TPR.G1552 Trifolium pratense HOM05D004233 ORTHO05D003507 7.1e-13 77.8 125 47.2
Lj6g0009965 Lotus japonicus HOM05D004233 ORTHO05D003507 1.2e-12 77.0 124 44.4
Lalb_Chr03g0043081 Lupinus albus HOM05D004233 ORTHO05D003507 2.7e-12 75.9 129 45.7
Potri.001G249500 Populus trichocarpa HOM05D004233 ORTHO05D003507 3.5e-12 75.5 107 47.7
Lsat_1_v5_gn_9_35941 Lactuca sativa HOM05D004233 ORTHO05D003507 7.8e-12 74.3 131 42.7
Lalb_Chr13g0291241 Lupinus albus HOM05D004233 ORTHO05D003507 1.0e-11 73.9 118 47.5
PSO339G4028 Papaver somniferum HOM05D004233 ORTHO05D003507 2.3e-11 72.8 154 39.6
Hma1.2p1_0227F.1_g096330 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 3.0e-11 72.4 78 57.7
Lalb_Chr15g0089821 Lupinus albus HOM05D004233 ORTHO05D003507 5.1e-11 71.6 127 43.3
THA.LOC104823286 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 6.6e-11 71.2 143 39.2
DCAR_018722 Daucus carota HOM05D004233 ORTHO05D003507 8.6e-11 70.9 133 42.1
DCAR_015449 Daucus carota HOM05D004233 ORTHO05D003507 4.3e-10 68.6 130 40.8
Gohir.D04G129214 Gossypium hirsutum HOM05D004233 ORTHO05D003507 4.3e-10 68.6 113 42.5
Gorai.012G112300 Gossypium raimondii HOM05D004233 ORTHO05D003507 4.3e-10 68.6 113 42.5
Haze_24266 Corylus avellana HOM05D004233 ORTHO05D003507 1.2e-09 67.0 75 52.0
DCAR_024028 Daucus carota HOM05D004233 ORTHO05D003507 1.2e-09 67.0 50 68.0
Gohir.A04G088850 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.2e-09 67.0 113 41.6
MBI05_g30571_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 1.6e-09 66.6 108 42.6
Sopen09g007170 Solanum pennellii HOM05D004233 ORTHO05D003507 1.6e-09 66.6 140 37.1
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 2.1e-09 66.2 133 36.1
BcaNung07269 Brassica carinata HOM05D004233 ORTHO05D003507 2.1e-09 66.2 151 35.1
SalBow4G0303 Salvia bowleyana HOM05D004233 ORTHO05D003507 2.1e-09 66.2 75 53.3
TWI79G1354 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 2.1e-09 66.2 71 52.1
arahy.Tifrunner.gnm1.ann1.BL7XQ3 Arachis hypogaea HOM05D004233 ORTHO05D003507 2.8e-09 65.9 95 49.5
Gohir.D05G090600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.6e-09 65.5 112 41.1
Gorai.009G093100 Gossypium raimondii HOM05D004233 ORTHO05D003507 3.6e-09 65.5 112 41.1
Rhsim13G0071800 Rhododendron simsii HOM05D004233 ORTHO05D003507 3.6e-09 65.5 139 37.4
PSO384G2407 Papaver somniferum HOM05D004233 ORTHO05D003507 6.2e-09 64.7 155 36.8
Gohir.A05G089700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 8.1e-09 64.3 77 48.1
Gohir.D07G106900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 8.1e-09 64.3 101 42.6
Gorai.001G115000 Gossypium raimondii HOM05D004233 ORTHO05D003507 1.1e-08 63.9 75 52.0
Lsat_1_v5_gn_9_20140 Lactuca sativa HOM05D004233 ORTHO05D003507 1.4e-08 63.5 108 42.6
Migut.L01999 Erythranthe guttata HOM05D004233 ORTHO05D003507 1.8e-08 63.2 144 39.6
ClCG04G007170 Citrullus lanatus HOM05D004233 ORTHO05D003507 2.4e-08 62.8 124 41.9
Duzib150G0257 Durio zibethinus HOM05D004233 ORTHO05D003507 2.4e-08 62.8 75 50.7
CiPaw.14G060900 Carya illinoinensis HOM05D004233 ORTHO05D003507 3.1e-08 62.4 111 40.5
Gohir.A07G102900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 4.0e-08 62.0 75 50.7
QL01p037420 Quercus lobata HOM05D004233 ORTHO05D003507 4.0e-08 62.0 73 49.3
CARHR211560 Cardamine hirsuta HOM05D004233 ORTHO05D003507 5.2e-08 61.6 147 35.4
DCAR_028820 Daucus carota HOM05D004233 ORTHO05D003507 5.2e-08 61.6 84 50.0
Thhalv10014915m.g Eutrema salsugineum HOM05D004233 ORTHO05D003507 6.8e-08 61.2 162 33.3
SalBow4G1886 Salvia bowleyana HOM05D004233 ORTHO05D003507 6.8e-08 61.2 71 53.5
THA.LOC104827043 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 1.2e-07 60.5 144 37.5
A10p33670 Brassica napus HOM05D004233 ORTHO05D003507 1.5e-07 60.1 153 32.0
Nitab4.5_0000102g0150 Nicotiana tabacum HOM05D004233 ORTHO05D003507 1.5e-07 60.1 138 35.5
AT5G01225 Arabidopsis thaliana HOM05D004233 ORTHO05D003507 2.0e-07 59.7 141 35.5
BraA10t45398Z Brassica rapa HOM05D004233 ORTHO05D003507 2.0e-07 59.7 155 31.6
BcaC06g31968 Brassica carinata HOM05D004233 ORTHO05D003507 2.6e-07 59.3 159 30.8
BcaNung06802 Brassica carinata HOM05D004233 ORTHO05D003507 2.6e-07 59.3 152 33.6
BolC9t60190H Brassica oleracea HOM05D004233 ORTHO05D003507 2.6e-07 59.3 152 33.6
THA.LOC104816214 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 2.6e-07 59.3 149 37.6
CANSAT54G0898 Cannabis sativa HOM05D004233 ORTHO05D003507 3.4e-07 58.9 128 32.8
Peaxi162Scf00056g00201 Petunia axillaris HOM05D004233 ORTHO05D003507 3.4e-07 58.9 73 46.6
Ciclev10029412m.g Citrus clementina HOM05D004233 ORTHO05D003507 5.8e-07 58.2 77 46.8
Potri.009G043501 Populus trichocarpa HOM05D004233 ORTHO05D003507 5.8e-07 58.2 97 45.4
CiPaw.13G080500 Carya illinoinensis HOM05D004233 ORTHO05D003507 7.6e-07 57.8 71 47.9
Oeu045519.1 Olea europaea HOM05D004233 ORTHO05D003507 9.9e-07 57.4 75 44.0
SGA_v2.0_scaffold240G44104 Striga asiatica HOM05D004233 ORTHO05D003507 9.9e-07 57.4 115 39.1
Sp6g40580 Schrenkiella parvula HOM05D004233 ORTHO05D003507 1.3e-06 57.0 156 31.4
Sabra09G0030900 Salix brachista HOM05D004233 ORTHO05D003507 1.7e-06 56.6 72 47.2
Prupe.6G060400 Prunus persica HOM05D012510 ORTHO05D015115 2.2e-06 56.2 113 38.1
TPR.G13269 Trifolium pratense HOM05D010371 ORTHO05D003507 2.2e-06 56.2 71 45.1
C09p74580 Brassica napus HOM05D004233 ORTHO05D003507 2.9e-06 55.8 153 30.7
AL6G10960 Arabidopsis lyrata HOM05D004233 ORTHO05D003507 3.8e-06 55.5 160 33.1
Cc01_g13980 Coffea canephora HOM05D004233 ORTHO05D003507 3.8e-06 55.5 117 38.5
Manes.02G121400 Manihot esculenta HOM05D004233 ORTHO05D003507 3.8e-06 55.5 111 36.9
Nn2g11404 Nelumbo nucifera HOM05D004233 ORTHO05D003507 3.8e-06 55.5 112 35.7
A05p39820 Brassica napus HOM05D004233 ORTHO05D003507 8.4e-06 54.3 137 32.1
BraA05t22766Z Brassica rapa HOM05D004233 ORTHO05D003507 8.4e-06 54.3 137 32.1
CARHR083380 Cardamine hirsuta HOM05D004233 ORTHO05D003507 8.4e-06 54.3 149 34.9


User provided reference genes

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