Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.3e-210 735.3 370 100.0
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 3.7e-197 691.4 364 94.5
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 7.0e-196 687.2 364 94.0
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 5.8e-190 667.5 371 91.1
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 2.9e-189 665.2 364 91.2
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 8.1e-168 594.0 363 80.4
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 3.1e-167 592.0 363 79.3
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 3.5e-163 578.6 367 78.7
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 6.6e-162 574.3 365 78.6
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 1.5e-161 573.2 369 77.2
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 1.5e-161 573.2 366 77.9
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 7.3e-161 570.9 364 76.4
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 9.6e-161 570.5 364 77.5
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 8.1e-160 567.4 369 77.0
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 2.4e-159 565.8 368 75.8
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 5.3e-159 564.7 370 76.5
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 6.9e-159 564.3 368 77.4
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 5.8e-158 561.2 369 74.3
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 9.9e-158 560.5 364 75.8
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 9.9e-158 560.5 365 75.3
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 1.3e-157 560.1 354 78.2
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 3.8e-157 558.5 368 74.7
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 3.8e-157 558.5 363 76.6
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 3.8e-157 558.5 308 85.7
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 6.4e-157 557.8 364 74.7
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 6.4e-157 557.8 362 76.8
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 1.1e-156 557.0 365 75.6
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 1.4e-156 556.6 363 75.8
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 1.4e-156 556.6 307 85.3
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 4.2e-156 555.1 368 76.1
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 5.4e-156 554.7 364 76.4
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 7.1e-156 554.3 353 78.8
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 1.0e-154 550.4 385 72.7
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 1.0e-154 550.4 368 73.4
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 1.3e-154 550.1 353 76.8
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.8e-154 549.7 363 75.5
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 2.3e-154 549.3 295 86.1
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 3.9e-154 548.5 364 74.5
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 6.7e-154 547.7 370 73.2
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 1.9e-153 546.2 367 74.4
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 4.3e-153 545.0 378 72.0
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 4.3e-153 545.0 303 83.5
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 5.6e-153 544.7 367 74.1
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 7.4e-153 544.3 301 84.7
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 7.4e-153 544.3 374 72.7
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 1.3e-152 543.5 372 73.1
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 1.3e-152 543.5 381 71.4
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 1.3e-152 543.5 363 73.0
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 8.1e-152 540.8 364 73.1
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 8.1e-152 540.8 364 75.3
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 1.1e-151 540.4 365 72.3
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 1.1e-151 540.4 364 73.1
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 1.1e-151 540.4 370 71.6
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 4.0e-151 538.5 365 72.1
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 5.3e-151 538.1 366 72.4
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 6.9e-151 537.7 369 72.4
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 6.9e-151 537.7 364 72.8
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 9.0e-151 537.3 301 84.4
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 2.6e-150 535.8 371 72.2
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 4.5e-150 535.0 483 59.8
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 4.5e-150 535.0 368 73.1
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 5.8e-150 534.6 367 71.7
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 7.6e-150 534.3 367 72.5
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 1.0e-149 533.9 363 71.6
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 1.0e-149 533.9 363 71.6
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.2e-149 532.7 387 71.1
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 2.9e-149 532.3 366 73.8
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 3.8e-149 531.9 354 75.1
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 4.9e-149 531.6 388 69.3
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 6.5e-149 531.2 364 72.5
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 8.4e-149 530.8 365 72.6
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 8.4e-149 530.8 365 70.4
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 8.4e-149 530.8 368 71.7
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 1.4e-148 530.0 308 81.2
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 3.2e-148 528.9 364 71.4
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 5.5e-148 528.1 367 71.9
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 7.1e-148 527.7 365 70.4
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.7e-147 525.8 368 71.7
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 4.6e-147 525.0 385 68.8
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 6.0e-147 524.6 367 70.8
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 6.0e-147 524.6 367 69.8
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 7.9e-147 524.2 363 72.5
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 1.3e-146 523.5 300 81.7
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 3.0e-146 522.3 308 79.5
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 3.9e-146 521.9 368 71.7
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 3.9e-146 521.9 369 71.5
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 5.1e-146 521.5 367 71.7
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 5.1e-146 521.5 368 71.5
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 8.7e-146 520.8 365 71.2
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 8.7e-146 520.8 366 71.6
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 8.7e-146 520.8 367 71.4
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 1.1e-145 520.4 362 71.3
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 1.9e-145 519.6 366 71.3
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 1.9e-145 519.6 365 71.5
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 1.9e-145 519.6 366 71.3
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 2.5e-145 519.2 368 71.2
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 1.3e-144 516.9 369 71.5
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 3.7e-144 515.4 364 69.0
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 3.1e-143 512.3 369 68.0
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 7.6e-142 507.7 368 70.1
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 1.9e-140 503.1 354 70.6
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 5.5e-140 501.5 328 76.5
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 2.7e-139 499.2 364 71.4
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 1.1e-137 493.8 307 75.9
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 2.8e-136 489.2 387 65.4
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 9.0e-135 484.2 290 75.5
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 2.6e-134 482.6 294 76.2
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 1.0e-133 480.7 301 76.7
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 2.8e-128 462.6 277 79.8
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 4.8e-128 461.8 327 70.0
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 1.1e-127 460.7 337 69.4
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 4.1e-127 458.8 328 70.7
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 3.8e-117 425.6 282 70.2
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 3.2e-116 422.5 281 68.3
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 6.1e-115 418.3 285 69.1
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 3.3e-113 412.5 337 65.6
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 5.7e-113 411.8 288 71.9
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 3.7e-112 409.1 365 62.2
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 4.5e-110 402.1 296 66.2
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.9e-108 396.7 244 77.5
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 7.2e-108 394.8 255 76.9
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 2.1e-107 393.3 307 63.2
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 3.4e-97 359.4 292 60.3
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 2.2e-96 356.7 242 67.4
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 9.1e-95 351.3 260 67.7
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 3.3e-92 342.8 293 56.7
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 2.0e-89 333.6 337 57.3
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 5.4e-87 325.5 288 58.3
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 3.0e-77 293.1 167 83.8
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 5.0e-77 292.4 161 84.5
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 2.1e-67 260.4 237 57.0
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 1.0e-61 241.5 131 85.5
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 2.3e-61 240.4 126 90.5
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.0e-53 214.9 260 48.1
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 2.8e-51 206.8 147 68.7
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.2e-46 191.4 100 89.0
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 5.1e-45 186.0 147 64.6
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 8.1e-43 178.7 147 63.9
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 4.9e-40 169.5 145 55.2
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 2.5e-36 157.1 147 55.1
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 4.0e-34 149.8 108 63.0
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.6e-27 127.9 71 85.9
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 5.5e-23 112.8 65 78.5
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 1.3e-21 108.2 83 63.9
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 6.9e-18 95.9 60 76.7
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 2.9e-16 90.5 51 76.5
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 6.5e-16 89.4 51 76.5
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 6.5e-16 89.4 67 62.7
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 6.5e-16 89.4 67 62.7
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 1.9e-15 87.8 44 86.4
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 9.4e-15 85.5 41 95.1
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 4.3e-12 76.6 35 91.4
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 4.1e-10 70.1 58 60.3
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 1.2e-09 68.6 40 82.5
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 1.2e-06 58.5 93 44.1


User provided reference genes

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