Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0799 Fragaria x ananassa HOM05D006122 ORTHO05D007426 6.7e-116 420.6 202 100.0
FvH4_6g35380 Fragaria vesca HOM05D006122 ORTHO05D007426 1.0e-79 300.4 155 94.2
RcHm_v2.0_Chr2g0146911 Rosa chinensis HOM05D006122 ORTHO05D007426 4.4e-75 285.0 155 89.0
Prupe.3G035300 Prunus persica HOM05D006122 ORTHO05D007426 5.0e-71 271.6 155 83.9
MBI13_g36947_MAGBIO Magnolia biondii HOM05D006122 ORTHO05D007426 1.1e-70 270.4 164 78.0
MD17G1150700 Malus domestica HOM05D006122 ORTHO05D007426 2.8e-69 265.8 155 83.2
TAR383G0669 Trochodendron aralioides HOM05D006122 ORTHO05D007426 2.8e-69 265.8 155 80.6
MD09G1176300 Malus domestica HOM05D006122 ORTHO05D007426 8.0e-69 264.2 155 81.9
Dinv37838 Davidia involucrata HOM05D006122 ORTHO05D007426 2.3e-68 262.7 154 80.5
Rhsim12G0212300 Rhododendron simsii HOM05D006122 ORTHO05D007426 3.1e-68 262.3 158 79.1
vmacro22018 Vaccinium macrocarpon HOM05D006122 ORTHO05D007426 8.9e-68 260.8 165 75.8
Ciclev10026416m.g Citrus clementina HOM05D006122 ORTHO05D007426 1.2e-67 260.4 155 78.1
Cfa003494 Carpinus fangiana HOM05D006122 ORTHO05D007426 3.4e-67 258.8 155 78.7
Hma1.2p1_0229F.1_g096920 Hydrangea macrophylla HOM05D006122 ORTHO05D007426 4.4e-67 258.5 155 78.1
DCAR_022657 Daucus carota HOM05D006122 ORTHO05D007426 9.8e-67 257.3 157 79.6
Peaxi162Scf01003g00013 Petunia axillaris HOM05D006122 ORTHO05D007426 9.8e-67 257.3 157 78.3
Solyc11g005060.2 Solanum lycopersicum HOM05D006122 ORTHO05D007426 1.3e-66 256.9 157 79.0
Nitab4.5_0001168g0090 Nicotiana tabacum HOM05D006122 ORTHO05D007426 1.7e-66 256.5 156 78.8
Sopen11g001060 Solanum pennellii HOM05D006122 ORTHO05D007426 3.7e-66 255.4 163 77.3
Sabra10G0032200 Salix brachista HOM05D000989 ORTHO05D001287 8.3e-66 254.2 155 77.4
Thecc.06G126900 Theobroma cacao HOM05D006122 ORTHO05D007426 1.1e-65 253.8 155 77.4
Potri.010G076600 Populus trichocarpa HOM05D006122 ORTHO05D007426 1.9e-65 253.1 155 77.4
GSVIVG01016699001 Vitis vinifera HOM05D006122 ORTHO05D007426 1.9e-65 253.1 155 77.4
CSS0025263 Camellia sinensis var. sinensis HOM05D006122 ORTHO05D007426 3.2e-65 252.3 155 77.4
CiPaw.02G133000 Carya illinoinensis HOM05D006122 ORTHO05D007426 4.1e-65 251.9 155 76.1
Eucgr.J02608 Eucalyptus grandis HOM05D006122 ORTHO05D007426 4.1e-65 251.9 155 77.4
Actinidia26007 Actinidia chinensis HOM05D006122 ORTHO05D007426 9.2e-65 250.8 155 76.1
CANSAT56G0704 Cannabis sativa HOM05D006122 ORTHO05D007426 1.2e-64 250.4 155 74.8
PGR102G1167 Punica granatum HOM05D006122 ORTHO05D007426 1.6e-64 250.0 155 76.1
ATR0068G105 Amborella trichopoda HOM05D006122 ORTHO05D007426 2.0e-64 249.6 155 74.8
COL.COLO4_30828 Corchorus olitorius HOM05D006122 ORTHO05D007426 2.0e-64 249.6 155 74.2
Lj5A31T62 Lonicera japonica HOM05D006122 ORTHO05D007426 1.0e-63 247.3 179 65.9
Migut.I01117 Erythranthe guttata HOM05D006122 ORTHO05D007426 1.3e-63 246.9 157 74.5
Gohir.A05G138000 Gossypium hirsutum HOM05D006122 ORTHO05D007426 1.7e-63 246.5 155 73.5
AUR62018816 Chenopodium quinoa HOM05D006122 ORTHO05D007426 2.3e-63 246.1 160 71.9
Manes.11G015100 Manihot esculenta HOM05D006122 ORTHO05D007426 3.0e-63 245.7 155 74.8
Aqoxy3G03460 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 5.0e-63 245.0 155 74.8
QL05p002004 Quercus lobata HOM05D006122 ORTHO05D007426 5.0e-63 245.0 155 73.5
Gorai.009G144400 Gossypium raimondii HOM05D006122 ORTHO05D007426 6.6e-63 244.6 155 72.9
ECA238G0672 Erigeron canadensis HOM05D006122 ORTHO05D007426 8.6e-63 244.2 164 70.7
Gohir.D05G140100 Gossypium hirsutum HOM05D006122 ORTHO05D007426 1.9e-62 243.0 155 72.9
Duzib160G0673 Durio zibethinus HOM05D006122 ORTHO05D007426 2.5e-62 242.7 155 74.2
CAN.G1227.1 Capsicum annuum HOM05D006122 ORTHO05D007426 3.3e-62 242.3 157 76.4
MSTRG.22530 Avicennia marina HOM05D006122 ORTHO05D007426 4.3e-62 241.9 157 73.2
Cc04_g00910 Coffea canephora HOM05D006122 ORTHO05D007426 4.3e-62 241.9 158 72.8
Duzib235G1006 Durio zibethinus HOM05D006122 ORTHO05D007426 4.3e-62 241.9 155 73.5
HanXRQChr09g0277171 Helianthus annuus HOM05D006122 ORTHO05D007426 5.6e-62 241.5 157 72.0
TWI59G0171 Tripterygium wilfordii HOM05D006122 ORTHO05D007426 5.6e-62 241.5 155 72.9
Thhalv10008577m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 3.6e-61 238.8 157 72.6
CARHR017950 Cardamine hirsuta HOM05D006122 ORTHO05D007426 8.0e-61 237.7 157 72.0
Hund14473 Selenicereus undatus HOM05D006122 ORTHO05D007426 8.0e-61 237.7 171 67.3
Os01g0727400 Oryza sativa ssp. japonica HOM05D006122 ORTHO05D007426 1.4e-60 236.9 159 70.4
Ah.07g199940 Amaranthus hybridus HOM05D006122 ORTHO05D007426 2.3e-60 236.1 156 70.5
AL1G29610 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 3.1e-60 235.7 157 72.0
AT1G17350 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 3.1e-60 235.7 157 71.3
Sc01g0007910 Simmondsia chinensis HOM05D006122 ORTHO05D007426 5.2e-60 235.0 149 73.8
MELO3C017781.2 Cucumis melo HOM05D006122 ORTHO05D007426 8.9e-60 234.2 168 66.7
Carub.0002s1927 Capsella rubella HOM05D006122 ORTHO05D007426 1.2e-59 233.8 157 71.3
BraA06t24484Z Brassica rapa HOM05D006122 ORTHO05D007426 1.5e-59 233.4 158 70.3
Carub.0001s1711 Capsella rubella HOM05D006122 ORTHO05D007426 1.5e-59 233.4 157 71.3
PSO063G2922 Papaver somniferum HOM05D006122 ORTHO05D007426 1.5e-59 233.4 155 71.0
Sp1g15490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 1.5e-59 233.4 157 71.3
SpUn0033_0060 Schrenkiella parvula HOM05D006122 ORTHO05D007426 1.5e-59 233.4 157 71.3
A06p13310 Brassica napus HOM05D006122 ORTHO05D007426 2.0e-59 233.0 158 69.6
AT1G72420 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 2.6e-59 232.6 157 72.0
Sp5g27490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 3.4e-59 232.3 157 70.7
Sed0027026 Sechium edule HOM05D006122 ORTHO05D007426 5.8e-59 231.5 155 70.3
Lsat_1_v5_gn_8_4120 Lactuca sativa HOM05D006122 ORTHO05D007426 9.8e-59 230.7 150 72.7
THA.LOC104812266 Tarenaya hassleriana HOM05D006122 ORTHO05D007426 9.8e-59 230.7 157 70.1
EL10Ac5g12242 Beta vulgaris HOM05D006122 ORTHO05D007426 1.3e-58 230.3 147 72.1
unitig_32.g10995 Utricularia gibba HOM05D006122 ORTHO05D007426 1.7e-58 229.9 155 69.0
Lalb_Chr10g0101271 Lupinus albus HOM05D006122 ORTHO05D007426 3.7e-58 228.8 156 71.2
C05p15780 Brassica napus HOM05D006122 ORTHO05D007426 4.9e-58 228.4 158 69.6
BolC5t30283H Brassica oleracea HOM05D006122 ORTHO05D007426 4.9e-58 228.4 158 69.6
PSO832G0128 Papaver somniferum HOM05D006122 ORTHO05D007426 1.1e-57 227.3 155 69.0
TPR.G16670 Trifolium pratense HOM05D006122 ORTHO05D007426 1.1e-57 227.3 159 66.7
BcaNung07320 Brassica carinata HOM05D006122 ORTHO05D007426 1.4e-57 226.9 157 69.4
CsaV3_4G002610 Cucumis sativus L. HOM05D006122 ORTHO05D007426 3.2e-57 225.7 155 68.4
Aa31LG4G2750 Aethionema arabicum HOM05D006122 ORTHO05D007426 4.1e-57 225.3 160 66.9
Aqoxy301s003 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 5.4e-57 224.9 148 73.6
Ca_23414_v3 Cicer arietinum L. HOM05D006122 ORTHO05D007426 9.2e-57 224.2 156 69.2
Phvul.010G126800 Phaseolus vulgaris HOM05D006122 ORTHO05D007426 9.2e-57 224.2 156 68.6
Thhalv10019098m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 1.2e-56 223.8 157 69.4
Medtr8g022330 Medicago truncatula HOM05D006122 ORTHO05D007426 1.2e-56 223.8 156 67.3
Lj3g0011237 Lotus japonicus HOM05D006122 ORTHO05D007426 1.6e-56 223.4 155 69.0
SGA_v2.0_scaffold71G23902 Striga asiatica HOM05D006122 ORTHO05D007426 2.1e-56 223.0 174 64.4
CARHR065320 Cardamine hirsuta HOM05D006122 ORTHO05D007426 2.7e-56 222.6 157 68.2
VMungo0331G0398 Vigna mungo HOM05D006122 ORTHO05D007426 3.5e-56 222.2 156 68.6
Glyma.07G043200 Glycine max HOM05D006122 ORTHO05D007426 7.8e-56 221.1 155 68.4
arahy.Tifrunner.gnm1.ann1.JC3XNH Arachis hypogaea HOM05D006122 ORTHO05D007426 1.0e-55 220.7 156 67.9
Glyma.16G011600 Glycine max HOM05D006122 ORTHO05D007426 1.0e-55 220.7 155 68.4
HPP92_000787 Vanilla planifolia HOM05D006122 ORTHO05D007426 1.0e-55 220.7 173 61.3
Psat4g219480 Pisum sativum HOM05D006122 ORTHO05D007426 1.7e-55 219.9 156 66.0
arahy.Tifrunner.gnm1.ann1.DIA1Z1 Arachis hypogaea HOM05D006122 ORTHO05D007426 3.0e-55 219.2 156 67.3
HPP92_026812 Vanilla planifolia HOM05D006122 ORTHO05D007426 5.1e-55 218.4 155 65.8
Zm00001eb361800 Zea mays HOM05D006122 ORTHO05D007426 1.1e-54 217.2 160 65.6
CDE02G1839 Ceratophyllum demersum HOM05D006122 ORTHO05D007426 6.4e-50 201.4 155 63.2
FAN14G0976 Fragaria x ananassa HOM05D006122 ORTHO05D007426 3.6e-45 185.7 104 88.5
AUR62007187 Chenopodium quinoa HOM05D006122 ORTHO05D007426 1.3e-42 177.2 132 65.2
Oeu000384.1 Olea europaea HOM05D006122 ORTHO05D007426 1.6e-40 170.2 124 66.9
A07p38600 Brassica napus HOM05D006122 ORTHO05D007426 1.5e-38 163.7 135 60.0
Nn1g04517 Nelumbo nucifera HOM05D006122 ORTHO05D007426 7.3e-38 161.4 117 65.0
C06p46770 Brassica napus HOM05D006122 ORTHO05D007426 2.8e-37 159.5 124 62.9
BolC6t39721H Brassica oleracea HOM05D006122 ORTHO05D007426 9.0e-36 154.5 135 57.0
BraA07t31418Z Brassica rapa HOM05D006122 ORTHO05D007426 2.0e-35 153.3 162 50.0
SalBow5G2173 Salvia bowleyana HOM05D006122 ORTHO05D007426 3.4e-35 152.5 139 56.8
Cpa.g.sc25.169 Carica papaya HOM05D006122 ORTHO05D007426 4.4e-35 152.1 98 73.5
AagrBONN_evm.TU.Sc2ySwM_362.2335 Anthoceros agrestis HOM05D006122 ORTHO05D007426 2.2e-34 149.8 190 40.5
Mapoly0158s0026 Marchantia polymorpha HOM05D006122 ORTHO05D007426 4.2e-33 145.6 155 45.8
Pp3c3_21840 Physcomitrium patens HOM05D006122 ORTHO05D007426 5.4e-33 145.2 155 45.2
Haze_16093 Corylus avellana HOM05D006122 ORTHO05D007426 1.0e-31 141.0 143 54.5
Haze_16097 Corylus avellana HOM05D006122 ORTHO05D007426 1.0e-31 141.0 143 54.5
AL2G32090 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 5.1e-31 138.7 89 70.8
CBR_g33997 Chara braunii HOM05D006122 ORTHO05D007426 6.6e-31 138.3 170 37.6
BcaB03g14991 Brassica carinata HOM05D006122 ORTHO05D007426 1.4e-25 120.6 83 65.1
CAN.G526.12 Capsicum annuum HOM05D006122 ORTHO05D007426 2.1e-24 116.7 173 42.2
Actinidia31156 Actinidia chinensis HOM05D006122 ORTHO05D007426 1.8e-23 113.6 90 64.4
Nn4g23234 Nelumbo nucifera HOM05D006122 ORTHO05D007426 1.5e-22 110.5 71 73.2
SHI23560 Sapria himalayana HOM05D006122 ORTHO05D007426 7.4e-22 108.2 61 77.0
SalBow5G3255 Salvia bowleyana HOM05D006122 ORTHO05D007426 1.3e-21 107.5 106 55.7
SMO165G0005 Selaginella moellendorffii HOM05D006122 ORTHO05D007426 2.7e-16 89.7 145 31.7
BcaB03g14993 Brassica carinata HOM05D006122 ORTHO05D007426 2.3e-15 86.7 55 70.9
Nn1g08880 Nelumbo nucifera HOM05D006122 ORTHO05D007426 4.8e-13 79.0 38 86.8
Cre02.g076750 Chlamydomonas reinhardtii HOM05D006122 ORTHO05D007426 1.8e-12 77.0 161 28.6
MCO13G567 Micromonas commoda HOM05D006122 ORTHO05D007426 6.9e-12 75.1 212 26.9
Actinidia31157 Actinidia chinensis HOM05D006122 ORTHO05D007426 2.0e-11 73.6 32 93.8
SEGI_37442 Sequoiadendron giganteum HOM05D006122 ORTHO05D007426 2.1e-08 63.5 33 78.8


User provided reference genes

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