Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 2.7e-51 204.9 96 100.0
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 2.7e-51 204.9 96 100.0
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 6.1e-51 203.8 96 99.0
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 3.4e-49 198.0 96 94.8
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 4.0e-42 174.5 95 83.2
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 1.5e-41 172.6 95 82.1
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 3.2e-39 164.9 96 77.1
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 2.7e-38 161.8 96 76.0
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 5.0e-37 157.5 86 86.0
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 1.9e-36 155.6 94 73.4
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 2.5e-36 155.2 96 74.0
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 1.6e-35 152.5 96 71.9
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 2.8e-35 151.8 98 70.4
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 3.6e-35 151.4 98 72.4
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 1.0e-34 149.8 98 70.4
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 1.0e-34 149.8 98 71.4
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 1.0e-34 149.8 98 70.4
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 1.4e-34 149.4 98 68.4
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 3.1e-34 148.3 98 69.4
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 4.0e-34 147.9 98 69.4
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 5.2e-34 147.5 97 72.2
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 6.8e-34 147.1 96 68.8
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.5e-33 146.0 98 68.4
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 3.4e-33 144.8 96 68.8
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.4e-33 144.8 98 67.3
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 5.8e-33 144.1 96 67.7
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 7.5e-33 143.7 98 66.3
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 7.5e-33 143.7 98 69.4
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 9.8e-33 143.3 98 66.3
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 1.7e-32 142.5 98 66.3
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.7e-32 142.5 98 66.3
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.7e-32 142.5 98 66.3
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 2.9e-32 141.7 98 67.3
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 4.9e-32 141.0 96 67.7
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 6.4e-32 140.6 98 67.3
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 6.4e-32 140.6 96 66.7
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 4.1e-31 137.9 96 63.5
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 5.4e-31 137.5 93 69.9
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 7.0e-31 137.1 96 63.5
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 7.0e-31 137.1 93 69.9
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 9.2e-31 136.7 96 66.7
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 1.6e-30 136.0 96 63.5
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 2.0e-30 135.6 96 67.7
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 2.7e-30 135.2 93 69.9
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 2.7e-30 135.2 97 67.0
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 7.8e-30 133.7 84 72.6
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 1.3e-29 132.9 96 62.5
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 1.7e-29 132.5 96 62.5
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 3.0e-29 131.7 97 64.9
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 1.5e-28 129.4 84 71.4
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 1.9e-28 129.0 96 59.4
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 9.5e-28 126.7 132 50.0
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 9.5e-28 126.7 105 61.9
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 6.2e-27 124.0 96 60.4
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 6.2e-27 124.0 100 58.0
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 8.0e-27 123.6 105 61.0
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 8.0e-27 123.6 96 59.4
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 1.1e-26 123.2 95 63.2
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 5.2e-26 120.9 97 59.8
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 6.8e-26 120.6 86 65.1
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 6.8e-26 120.6 95 61.1
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 8.9e-26 120.2 98 61.2
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 1.5e-25 119.4 96 56.2
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 1.5e-25 119.4 96 56.2
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 4.4e-25 117.9 95 56.8
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 4.4e-25 117.9 86 64.0
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 4.4e-25 117.9 97 58.8
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 9.8e-25 116.7 100 54.0
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 9.8e-25 116.7 95 54.7
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 1.3e-24 116.3 96 54.2
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 1.7e-24 115.9 96 53.1
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 2.2e-24 115.5 73 72.6
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 2.9e-24 115.2 86 60.5
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 2.9e-24 115.2 84 57.1
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 3.7e-24 114.8 99 58.6
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 6.4e-24 114.0 92 53.3
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 1.1e-23 113.2 86 64.0
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 1.1e-23 113.2 96 53.1
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 1.4e-23 112.8 97 57.7
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 1.4e-23 112.8 96 57.3
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.4e-23 112.1 86 59.3
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 3.2e-23 111.7 96 56.2
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 4.1e-23 111.3 84 59.5
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 5.4e-23 110.9 84 61.9
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 7.1e-23 110.5 96 55.2
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 9.2e-23 110.2 84 58.3
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 1.6e-22 109.4 84 58.3
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 2.7e-22 108.6 97 53.6
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 3.5e-22 108.2 86 59.3
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 6.0e-22 107.5 84 57.1
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.0e-21 106.7 86 57.0
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.3e-21 106.3 90 51.1
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 3.0e-21 105.1 97 50.5
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 6.6e-21 104.0 84 53.6
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 2.1e-19 99.0 85 56.5
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 4.7e-19 97.8 84 52.4
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 2.3e-18 95.5 85 55.3
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 2.3e-18 95.5 91 50.5
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 5.2e-18 94.4 102 47.1
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 6.8e-18 94.0 102 47.1
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 6.8e-18 94.0 86 50.0
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 1.2e-17 93.2 102 48.0
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 3.4e-17 91.7 103 48.5
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 4.4e-17 91.3 103 47.6
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 9.9e-17 90.1 102 44.1
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 1.3e-16 89.7 65 58.5
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 1.7e-16 89.4 99 44.4
VMungo0251G3003 Vigna mungo HOM05D005781 ORTHO05D006835 2.2e-16 89.0 73 54.8
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 2.9e-16 88.6 81 58.0
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 2.9e-16 88.6 103 43.7
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 3.7e-16 88.2 104 45.2
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 6.4e-16 87.4 105 45.7
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 6.4e-16 87.4 104 44.2
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 8.3e-16 87.0 105 43.8
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 8.3e-16 87.0 73 60.3
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 1.1e-15 86.7 88 53.4
RcHm_v2.0_Chr1g0326231 Rosa chinensis HOM05D005781 ORTHO05D006835 1.9e-15 85.9 68 60.3
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 2.4e-15 85.5 58 69.0
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 4.1e-15 84.7 102 44.1
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 9.2e-15 83.6 107 43.9
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 1.6e-14 82.8 109 43.1
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 3.0e-13 78.6 80 47.5
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 9.6e-12 73.6 71 49.3
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 2.8e-11 72.0 58 62.1
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 6.8e-10 67.4 87 37.9
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 6.8e-10 67.4 87 37.9
Lalb_Chr07g0188641 Lupinus albus HOM05D005781 ORTHO05D006835 2.0e-09 65.9 49 57.1
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 2.9e-08 62.0 53 52.8
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 2.9e-08 62.0 53 52.8
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 1.4e-07 59.7 53 49.1
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 5.4e-07 57.8 61 47.5


User provided reference genes

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