Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0647 Fragaria x ananassa HOM05D007396 ORTHO05D009228 9.2e-176 620.2 323 100.0
FvH4_6g36570 Fragaria vesca HOM05D007396 ORTHO05D009228 1.3e-166 589.7 323 94.4
FAN14G5522 Fragaria x ananassa HOM05D000163 ORTHO05D009228 1.7e-166 589.3 323 94.1
RcHm_v2.0_Chr2g0149061 Rosa chinensis HOM05D007396 ORTHO05D009228 1.5e-162 576.2 323 91.6
FAN02G1321 Fragaria x ananassa HOM05D000163 ORTHO05D000219 3.3e-157 558.5 312 89.7
Prupe.3G025300 Prunus persica HOM05D007396 ORTHO05D009228 7.6e-146 520.8 324 81.8
PSO063G4472 Papaver somniferum HOM05D007396 ORTHO05D009228 6.5e-129 464.5 337 72.7
PSO170G5362 Papaver somniferum HOM05D007396 ORTHO05D009228 1.2e-127 460.3 337 72.1
Eucgr.E02321 Eucalyptus grandis HOM05D007396 ORTHO05D009228 7.4e-125 451.1 323 71.5
Eucgr.E02613 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.8e-124 448.4 323 71.2
Aqoxy2G02658 Aquilegia oxysepala HOM05D007396 ORTHO05D009228 6.3e-124 448.0 331 69.8
Ciclev10013937m.g Citrus clementina HOM05D007396 ORTHO05D009228 1.4e-123 446.8 323 72.1
Eucgr.E02270 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.1e-123 445.3 323 70.9
Eucgr.E02934 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.4e-122 442.2 323 70.9
Nn8g41117 Nelumbo nucifera HOM05D007396 ORTHO05D009228 1.4e-120 436.8 345 66.1
MD17G1161100 Malus domestica HOM05D007396 ORTHO05D009228 4.2e-120 435.3 339 74.0
Gorai.003G062400 Gossypium raimondii HOM05D007396 ORTHO05D009228 1.2e-119 433.7 321 70.1
Gohir.D03G058600 Gossypium hirsutum HOM05D007396 ORTHO05D009228 1.6e-119 433.3 321 70.1
Nitab4.5_0000642g0070 Nicotiana tabacum HOM05D007396 ORTHO05D009228 2.1e-119 433.0 337 69.1
Solyc03g113510.2 Solanum lycopersicum HOM05D007396 ORTHO05D009228 4.6e-119 431.8 329 70.2
Cfa003427 Carpinus fangiana HOM05D007396 ORTHO05D009228 7.9e-119 431.0 324 69.8
AUR62025704 Chenopodium quinoa HOM05D007396 ORTHO05D009228 1.0e-118 430.6 332 68.1
Sopen03g032560 Solanum pennellii HOM05D007396 ORTHO05D009228 1.8e-118 429.9 332 69.9
Gohir.A02G117900 Gossypium hirsutum HOM05D007396 ORTHO05D009228 2.3e-118 429.5 323 69.0
vmacro00415 Vaccinium macrocarpon HOM05D007396 ORTHO05D009228 2.3e-118 429.5 323 69.0
CiPaw.01G206900 Carya illinoinensis HOM05D007396 ORTHO05D009228 5.1e-118 428.3 321 71.7
AUR62001321 Chenopodium quinoa HOM05D007396 ORTHO05D009228 7.4e-117 424.5 303 71.6
PGSC0003DMG400024566 Solanum tuberosum HOM05D007396 ORTHO05D009228 1.7e-116 423.3 329 68.7
Nitab4.5_0005451g0030 Nicotiana tabacum HOM05D007396 ORTHO05D009228 2.2e-116 422.9 319 69.9
CAN.G999.17 Capsicum annuum HOM05D007396 ORTHO05D009228 6.3e-116 421.4 333 68.2
Cc02_g09240 Coffea canephora HOM05D007396 ORTHO05D009228 3.1e-115 419.1 325 67.7
COL.COLO4_38280 Corchorus olitorius HOM05D007396 ORTHO05D009228 3.4e-114 415.6 326 66.9
Duzib192G0415 Durio zibethinus HOM05D007396 ORTHO05D009228 3.4e-114 415.6 303 71.6
Manes.06G178800 Manihot esculenta HOM05D007396 ORTHO05D009228 4.5e-114 415.2 323 66.9
Cpa.g.sc176.25 Carica papaya HOM05D007396 ORTHO05D009228 2.9e-113 412.5 328 66.5
GSVIVG01029532001 Vitis vinifera HOM05D007396 ORTHO05D009228 2.9e-113 412.5 329 68.1
QL03p030511 Quercus lobata HOM05D007396 ORTHO05D009228 1.4e-112 410.2 294 76.2
Hund05665 Selenicereus undatus HOM05D007396 ORTHO05D009228 3.2e-112 409.1 328 64.6
Oeu045511.1 Olea europaea HOM05D007396 ORTHO05D009228 1.2e-111 407.1 330 64.8
Eucgr.E02947 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.7e-111 406.0 322 66.8
Lsat_1_v5_gn_4_106220 Lactuca sativa HOM05D007396 ORTHO05D009228 2.3e-110 402.9 324 66.7
ECA233G2395 Erigeron canadensis HOM05D007396 ORTHO05D009228 3.0e-110 402.5 332 65.4
EL10Ac7g18125 Beta vulgaris HOM05D007396 ORTHO05D009228 1.1e-109 400.6 321 64.2
CANSAT01G2937 Cannabis sativa HOM05D007396 ORTHO05D009228 3.3e-109 399.1 338 63.9
CARHR017230 Cardamine hirsuta HOM05D007396 ORTHO05D009228 2.8e-108 396.0 327 64.5
Eucgr.E02145 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.8e-108 396.0 323 66.6
AL1G28940 Arabidopsis lyrata HOM05D007396 ORTHO05D009228 8.2e-108 394.4 326 63.2
Sp1g14920 Schrenkiella parvula HOM05D007396 ORTHO05D009228 8.2e-108 394.4 328 65.9
Thhalv10009697m.g Eutrema salsugineum HOM05D007396 ORTHO05D009228 5.3e-107 391.7 327 63.3
Carub.0001s1651 Capsella rubella HOM05D007396 ORTHO05D009228 7.0e-107 391.3 326 64.7
HPP92_017379 Vanilla planifolia HOM05D007396 ORTHO05D009228 7.0e-107 391.3 331 61.9
CsaV3_4G028760 Cucumis sativus L. HOM05D007396 ORTHO05D009228 2.6e-106 389.4 325 62.8
Sc05g0005440 Simmondsia chinensis HOM05D007396 ORTHO05D009228 6.5e-105 384.8 318 63.8
DCAR_005735 Daucus carota HOM05D007396 ORTHO05D009228 2.5e-104 382.9 336 61.9
BcaB03g13031 Brassica carinata HOM05D007396 ORTHO05D009228 1.6e-103 380.2 311 65.6
Sed0010526 Sechium edule HOM05D007396 ORTHO05D009228 1.8e-102 376.7 330 63.0
THA.LOC104812337 Tarenaya hassleriana HOM05D007396 ORTHO05D009228 2.3e-102 376.3 325 65.8
PGR031G2036 Punica granatum HOM05D007396 ORTHO05D009228 5.2e-102 375.2 322 63.0
ClCG07G014720 Citrullus lanatus HOM05D007396 ORTHO05D009228 4.4e-101 372.1 324 63.0
Aa31LG7G1230 Aethionema arabicum HOM05D007396 ORTHO05D009228 2.4e-99 366.3 372 55.4
Migut.M00713 Erythranthe guttata HOM05D007396 ORTHO05D009228 2.4e-99 366.3 339 61.7
TWI12G0468 Tripterygium wilfordii HOM05D007396 ORTHO05D009228 2.4e-99 366.3 275 69.8
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 4.1e-99 365.5 294 68.0
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 2.7e-98 362.8 294 67.3
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 7.7e-98 361.3 302 63.9
CDE06G1120 Ceratophyllum demersum HOM05D007396 ORTHO05D009228 2.9e-97 359.4 297 62.6
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 6.5e-97 358.2 316 61.4
Eucgr.E02931 Eucalyptus grandis HOM05D007396 ORTHO05D009228 6.8e-94 348.2 321 61.1
SGA_v2.0_scaffold71G23969 Striga asiatica HOM05D000927 ORTHO05D009228 1.5e-93 347.1 329 60.5
Psat5g306960 Pisum sativum HOM05D007396 ORTHO05D009228 7.5e-93 344.7 294 62.9
BcaC07g38814 Brassica carinata HOM05D007396 ORTHO05D009228 3.5e-90 335.9 274 67.2
HanXRQChr06g0173121 Helianthus annuus HOM05D007396 ORTHO05D009228 7.7e-90 334.7 327 58.7
Os02g0140800 Oryza sativa ssp. japonica HOM05D007396 ORTHO05D009228 1.7e-89 333.6 365 52.6
CSS0031419 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 3.6e-87 325.9 327 55.7
AT1G16770 Arabidopsis thaliana HOM05D007396 ORTHO05D009228 8.0e-87 324.7 276 60.9
Actinidia31122 Actinidia chinensis HOM05D007396 ORTHO05D009228 1.2e-85 320.9 212 75.9
Haze_16206 Corylus avellana HOM05D007396 ORTHO05D009228 2.0e-85 320.1 211 73.5
SEGI_29070 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 9.8e-85 317.8 338 56.2
Eucgr.E02547 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.6e-82 310.5 276 61.6
MBI13_g34300_MAGBIO Magnolia biondii HOM05D007396 ORTHO05D009228 1.3e-81 307.4 225 67.1
SalBow6G2527 Salvia bowleyana HOM05D007396 ORTHO05D009228 1.5e-80 303.9 323 51.4
Zm00001eb328020 Zea mays HOM05D007396 ORTHO05D009228 1.5e-80 303.9 297 54.9
Medtr2g105720 Medicago truncatula HOM05D007396 ORTHO05D009228 3.0e-78 296.2 216 71.8
Potri.014G003300 Populus trichocarpa HOM05D007396 ORTHO05D009228 1.6e-74 283.9 335 54.3
Eucgr.E02214 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.0e-74 283.5 323 54.5
Eucgr.E02217 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.0e-74 283.5 190 72.1
Eucgr.J03193 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.6e-74 282.3 320 53.8
Eucgr.E02162 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.9e-72 276.9 323 52.0
Eucgr.E02918 Eucalyptus grandis HOM05D007396 ORTHO05D009228 9.5e-72 274.6 227 66.1
Eucgr.E02284 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.2e-69 267.7 270 55.9
Potri.004G169900 Populus trichocarpa HOM05D007396 ORTHO05D009228 2.0e-69 266.9 325 52.6
Eucgr.E02226 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.0e-66 256.9 174 74.1
CSS0029409 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 1.3e-65 254.2 179 73.2
BcaC05g25536 Brassica carinata HOM05D007396 ORTHO05D009228 1.6e-63 247.3 273 55.3
Pp3c5_8210 Physcomitrium patens HOM05D007396 ORTHO05D009228 9.2e-59 231.5 370 42.2
MELO3C032656.2 Cucumis melo HOM05D007396 ORTHO05D009228 1.2e-55 221.1 173 68.8
Thecc.06G054000 Theobroma cacao HOM05D007396 ORTHO05D009228 4.1e-51 206.1 128 78.1
Lj7C720T3 Lonicera japonica HOM05D007396 ORTHO05D009228 1.1e-48 198.0 163 63.2
ATR0626G334 Amborella trichopoda HOM05D007396 ORTHO05D009228 7.3e-48 195.3 175 60.0
unitig_32.g11080 Utricularia gibba HOM05D007396 ORTHO05D009228 1.6e-47 194.1 287 38.3
CBR_g41808 Chara braunii HOM05D007396 ORTHO05D009228 2.4e-46 190.3 222 45.0
BcaC07g38815 Brassica carinata HOM05D007396 ORTHO05D009228 1.9e-40 170.6 292 39.4
MELO3C010415.2 Cucumis melo HOM05D007396 ORTHO05D009228 1.6e-39 167.5 148 56.8
Mapoly0001s0056 Marchantia polymorpha HOM05D007396 ORTHO05D009228 4.2e-27 126.3 249 35.3
BcaC05g25534 Brassica carinata HOM05D000163 ORTHO05D000219 2.9e-20 103.6 101 57.4
Medtr2g105710 Medicago truncatula HOM05D007396 ORTHO05D009228 1.1e-16 91.7 71 64.8
Sabra14G0002100 Salix brachista HOM05D007396 ORTHO05D009228 1.1e-16 91.7 98 51.0
Actinidia31121 Actinidia chinensis HOM05D007396 ORTHO05D009228 2.0e-13 80.9 87 57.5
Cre07.g325721 Chlamydomonas reinhardtii HOM05D007396 ORTHO05D009228 8.5e-12 75.5 115 35.7
SEGI_36165 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 5.1e-09 66.2 42 78.6
SEGI_21917 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 4.8e-07 59.7 39 71.8


User provided reference genes

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