Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0624 Fragaria x ananassa HOM05D001316 ORTHO05D001113 3.7e-120 434.9 218 100.0
FvH4_6g46690 Fragaria vesca HOM05D001316 ORTHO05D001113 2.5e-52 209.5 110 95.5
FAN14G1055 Fragaria x ananassa HOM05D001316 ORTHO05D001113 2.5e-52 209.5 110 95.5
FAN05G5300 Fragaria x ananassa HOM05D001316 ORTHO05D001113 4.3e-52 208.8 110 94.5
RcHm_v2.0_Chr2g0165561 Rosa chinensis HOM05D001316 ORTHO05D001113 5.5e-39 165.2 110 76.4
Glyma.13G055400 Glycine max HOM05D001316 ORTHO05D001113 2.4e-10 70.1 112 42.0
TWI32G1136 Tripterygium wilfordii HOM05D001316 ORTHO05D001113 7.0e-10 68.6 111 44.1
Sabra10G0119500 Salix brachista HOM05D001316 ORTHO05D001113 1.2e-09 67.8 110 42.7
Cpa.g.sc14.195 Carica papaya HOM05D001316 ORTHO05D001113 2.0e-09 67.0 110 41.8
Prupe.1G288700 Prunus persica HOM05D001316 ORTHO05D001113 2.7e-09 66.6 114 43.9
CiPaw.04G054300 Carya illinoinensis HOM05D001316 ORTHO05D001113 3.5e-09 66.2 110 41.8
Migut.E00046 Erythranthe guttata HOM05D001316 ORTHO05D001113 3.5e-09 66.2 110 44.5
QL02p067344 Quercus lobata HOM05D001316 ORTHO05D001113 3.5e-09 66.2 109 41.3
Sed0021281 Sechium edule HOM05D001316 ORTHO05D001113 4.5e-09 65.9 110 45.5
CANSAT64G2561 Cannabis sativa HOM05D001316 ORTHO05D001113 7.7e-09 65.1 111 40.5
QL03p073924 Quercus lobata HOM05D001316 ORTHO05D001113 7.7e-09 65.1 110 39.1
Solyc02g089065.1 Solanum lycopersicum HOM05D001316 ORTHO05D001113 7.7e-09 65.1 112 40.2
Sopen02g033820 Solanum pennellii HOM05D001316 ORTHO05D001113 1.3e-08 64.3 112 40.2
Lsat_1_v5_gn_3_53761 Lactuca sativa HOM05D001316 ORTHO05D001113 1.7e-08 63.9 110 40.9
Lsat_1_v5_gn_4_110720 Lactuca sativa HOM05D001316 ORTHO05D001113 1.7e-08 63.9 119 39.5
Potri.017G095200 Populus trichocarpa HOM05D001316 ORTHO05D001113 1.7e-08 63.9 110 42.7
Sopen03g034050 Solanum pennellii HOM05D001316 ORTHO05D001113 1.7e-08 63.9 110 42.7
PGSC0003DMG400001364 Solanum tuberosum HOM05D001316 ORTHO05D001113 1.7e-08 63.9 110 41.8
TWI34G0200 Tripterygium wilfordii HOM05D001316 ORTHO05D001113 1.7e-08 63.9 111 43.2
CAN.G497.94 Capsicum annuum HOM05D001316 ORTHO05D001113 2.2e-08 63.5 112 40.2
MD09G1068700 Malus domestica HOM05D001316 ORTHO05D001113 2.2e-08 63.5 110 40.0
MD16G1059900 Malus domestica HOM05D001316 ORTHO05D001113 2.2e-08 63.5 114 43.0
MD17G1061700 Malus domestica HOM05D001316 ORTHO05D001113 2.2e-08 63.5 109 41.3
TWI75G0290 Tripterygium wilfordii HOM05D001316 ORTHO05D001113 2.2e-08 63.5 113 39.8
Dinv34932 Davidia involucrata HOM05D000224 ORTHO05D001489 2.9e-08 63.2 150 36.0
Potri.010G157600 Populus trichocarpa HOM05D001316 ORTHO05D001113 2.9e-08 63.2 110 40.0
THA.LOC104808527 Tarenaya hassleriana HOM05D001316 ORTHO05D001113 2.9e-08 63.2 110 39.1
TAR374G1493 Trochodendron aralioides HOM05D000712 ORTHO05D000617 2.9e-08 63.2 115 40.0
Prupe.3G252100 Prunus persica HOM05D001316 ORTHO05D001113 3.8e-08 62.8 110 42.7
SalBow4G3239 Salvia bowleyana HOM05D001316 ORTHO05D001113 3.8e-08 62.8 110 40.0
Aqoxy3G03666 Aquilegia oxysepala HOM05D001316 ORTHO05D001113 5.0e-08 62.4 135 39.3
Haze_11895 Corylus avellana HOM05D001316 ORTHO05D001113 5.0e-08 62.4 119 36.1
CiPaw.03G087600 Carya illinoinensis HOM05D001316 ORTHO05D001113 6.5e-08 62.0 110 40.9
CsaV3_6G033710 Cucumis sativus L. HOM05D001316 ORTHO05D001113 6.5e-08 62.0 111 44.1
Duzib147G0005 Durio zibethinus HOM05D001316 ORTHO05D001113 6.5e-08 62.0 111 38.7
ECA232G1462 Erigeron canadensis HOM05D001316 ORTHO05D001113 6.5e-08 62.0 110 43.6
Eucgr.B03146 Eucalyptus grandis HOM05D001316 ORTHO05D001113 6.5e-08 62.0 114 43.0
Solyc03g114970.3 Solanum lycopersicum HOM05D001316 ORTHO05D001113 6.5e-08 62.0 110 41.8
CAN.G1228.12 Capsicum annuum HOM05D001316 ORTHO05D001113 8.5e-08 61.6 110 41.8
MELO3C011417.2 Cucumis melo HOM05D001316 ORTHO05D001113 8.5e-08 61.6 113 43.4
Phvul.004G038000 Phaseolus vulgaris HOM05D001316 ORTHO05D001113 8.5e-08 61.6 112 43.8
Potri.008G097000 Populus trichocarpa HOM05D001316 ORTHO05D001113 8.5e-08 61.6 110 40.0
FAN08G1795 Fragaria x ananassa HOM05D001316 ORTHO05D001113 1.1e-07 61.2 118 35.6
Oeu014421.1 Olea europaea HOM05D001316 ORTHO05D001113 1.1e-07 61.2 112 41.1
Thecc.04G097800 Theobroma cacao HOM05D001316 ORTHO05D001113 1.1e-07 61.2 110 42.7
GSVIVG01032901001 Vitis vinifera HOM05D001316 ORTHO05D001113 1.1e-07 61.2 112 42.0
CSS0036076 Camellia sinensis var. sinensis HOM05D001316 ORTHO05D001113 1.5e-07 60.8 112 42.0
Carub.0002s1582 Capsella rubella HOM05D001316 ORTHO05D001113 1.5e-07 60.8 112 40.2
MBI19_g21276_MAGBIO Magnolia biondii HOM05D001316 ORTHO05D001113 1.5e-07 60.8 117 39.3
MD06G1203200 Malus domestica HOM05D001316 ORTHO05D001113 1.5e-07 60.8 111 43.2
PGR102G0948 Punica granatum HOM05D001316 ORTHO05D001113 1.5e-07 60.8 114 40.4
COL.COLO4_37971 Corchorus olitorius HOM05D001316 ORTHO05D001113 1.9e-07 60.5 110 40.0
ECA246G4739 Erigeron canadensis HOM05D003222 ORTHO05D003706 1.9e-07 60.5 112 42.9
FAN13G2963 Fragaria x ananassa HOM05D001316 ORTHO05D001113 2.5e-07 60.1 110 35.5
THA.LOC104822004 Tarenaya hassleriana HOM05D001316 ORTHO05D001113 2.5e-07 60.1 110 40.0
A02p15730 Brassica napus HOM05D001316 ORTHO05D001113 3.2e-07 59.7 111 39.6
C02p26180 Brassica napus HOM05D001316 ORTHO05D001113 3.2e-07 59.7 111 39.6
ClCG08G010450 Citrullus lanatus HOM05D001316 ORTHO05D001113 3.2e-07 59.7 113 42.5
Migut.L01180 Erythranthe guttata HOM05D001316 ORTHO05D001113 3.2e-07 59.7 110 41.8
Gohir.A07G067600 Gossypium hirsutum HOM05D001316 ORTHO05D001113 3.2e-07 59.7 110 40.0
TWI31G0776 Tripterygium wilfordii HOM05D001316 ORTHO05D001113 3.2e-07 59.7 110 41.8
TWI31G1178 Tripterygium wilfordii HOM05D001316 ORTHO05D001113 3.2e-07 59.7 110 41.8
BolC2t08684H Brassica oleracea HOM05D001316 ORTHO05D001113 4.2e-07 59.3 122 38.5
BraA02t06634Z Brassica rapa HOM05D001316 ORTHO05D001113 4.2e-07 59.3 122 38.5
Duzib068G0106 Durio zibethinus HOM05D001316 ORTHO05D001113 4.2e-07 59.3 110 41.8
Atru.chr8.506 Acer truncatum HOM05D001316 ORTHO05D001113 5.5e-07 58.9 110 39.1
COL.COLO4_27865 Corchorus olitorius HOM05D001316 ORTHO05D001113 5.5e-07 58.9 112 42.9
Duzib251G0243 Durio zibethinus HOM05D001316 ORTHO05D001113 5.5e-07 58.9 112 41.1
Gohir.D07G072200 Gossypium hirsutum HOM05D001316 ORTHO05D001113 5.5e-07 58.9 110 39.1
MSTRG.13452 Avicennia marina HOM05D001316 ORTHO05D001113 7.2e-07 58.5 110 42.7
CiPaw.05G124300 Carya illinoinensis HOM05D001316 ORTHO05D001113 7.2e-07 58.5 110 38.2
Gorai.001G076400 Gossypium raimondii HOM05D001316 ORTHO05D001113 7.2e-07 58.5 111 43.2
arahy.Tifrunner.gnm1.ann1.7H823S Arachis hypogaea HOM05D001316 ORTHO05D001113 9.4e-07 58.2 110 43.6
Cpa.g.sc1.138 Carica papaya HOM05D001316 ORTHO05D001113 9.4e-07 58.2 130 36.9
Gohir.D13G083000 Gossypium hirsutum HOM05D001316 ORTHO05D001113 9.4e-07 58.2 112 41.1
Gorai.013G094900 Gossypium raimondii HOM05D001316 ORTHO05D001113 9.4e-07 58.2 112 41.1
Manes.01G026900 Manihot esculenta HOM05D001316 ORTHO05D001113 9.4e-07 58.2 110 37.3
Manes.05G109500 Manihot esculenta HOM05D001316 ORTHO05D001113 9.4e-07 58.2 110 40.9
Prupe.5G206800 Prunus persica HOM05D001316 ORTHO05D001113 9.4e-07 58.2 111 41.4
SalBow4G1455 Salvia bowleyana HOM05D001316 ORTHO05D001113 9.4e-07 58.2 110 38.2
SalBow4G1960 Salvia bowleyana HOM05D001316 ORTHO05D001113 9.4e-07 58.2 110 38.2
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 9.4e-07 58.2 110 40.0
Gohir.A13G083100 Gossypium hirsutum HOM05D001316 ORTHO05D001113 1.2e-06 57.8 112 40.2
MBI16_g10847_MAGBIO Magnolia biondii HOM05D001316 ORTHO05D001113 1.2e-06 57.8 117 36.8
Nitab4.5_0009044g0030 Nicotiana tabacum HOM05D001316 ORTHO05D001113 1.2e-06 57.8 112 43.8
AL2G28320 Arabidopsis lyrata HOM05D001316 ORTHO05D001113 1.6e-06 57.4 110 39.1
MD13G1060700 Malus domestica HOM05D001316 ORTHO05D001113 1.6e-06 57.4 110 40.0
Manes.01G094600 Manihot esculenta HOM05D001316 ORTHO05D001113 1.6e-06 57.4 110 36.4
SGA_v2.0_scaffold236G43775 Striga asiatica HOM05D001316 ORTHO05D001113 1.6e-06 57.4 110 38.2
AT1G26355 Arabidopsis thaliana HOM05D001316 ORTHO05D001113 2.1e-06 57.0 113 41.6
MD14G1213800 Malus domestica HOM05D001316 ORTHO05D001113 2.1e-06 57.0 111 38.7
PGR083G0489 Punica granatum HOM05D001316 ORTHO05D001113 2.1e-06 57.0 112 42.0
Thecc.03G104400 Theobroma cacao HOM05D001316 ORTHO05D001113 2.1e-06 57.0 110 39.1
GSVIVG01008116001 Vitis vinifera HOM05D001316 ORTHO05D001113 2.1e-06 57.0 110 38.2
FvH4_4g29840 Fragaria vesca HOM05D001316 ORTHO05D001113 2.7e-06 56.6 110 40.0
FAN12G3040 Fragaria x ananassa HOM05D001316 ORTHO05D001113 2.7e-06 56.6 110 40.0
Hma1.2p1_1555F.1_g290401 Hydrangea macrophylla HOM05D001316 ORTHO05D001113 2.7e-06 56.6 117 38.5
SalBow4G1468 Salvia bowleyana HOM05D001316 ORTHO05D001113 2.7e-06 56.6 108 38.9
CSS0015605 Camellia sinensis var. sinensis HOM05D001316 ORTHO05D001113 3.6e-06 56.2 110 40.9
RcHm_v2.0_Chr4g0438091 Rosa chinensis HOM05D001316 ORTHO05D001113 3.6e-06 56.2 110 40.0
Nitab4.5_0005596g0030 Nicotiana tabacum HOM05D001316 ORTHO05D001113 4.7e-06 55.8 112 43.8
TAR622G0843 Trochodendron aralioides HOM05D001316 ORTHO05D001113 4.7e-06 55.8 115 36.5
GSVIVG01012230001 Vitis vinifera HOM05D001316 ORTHO05D001113 4.7e-06 55.8 111 39.6
MSTRG.11334 Avicennia marina HOM05D001316 ORTHO05D001113 6.1e-06 55.5 116 39.7
Cc07_g04350 Coffea canephora HOM05D001316 ORTHO05D001113 6.1e-06 55.5 112 40.2
DCAR_025441 Daucus carota HOM05D001316 ORTHO05D001113 6.1e-06 55.5 110 40.0
FAN17G2025 Fragaria x ananassa HOM05D000113 ORTHO05D005275 6.1e-06 55.5 110 39.1
FAN22G2227 Fragaria x ananassa HOM05D001316 ORTHO05D001113 6.1e-06 55.5 110 39.1
Manes.06G082900 Manihot esculenta HOM05D001316 ORTHO05D001113 6.1e-06 55.5 112 40.2
Nn4g23461 Nelumbo nucifera HOM05D001316 ORTHO05D001113 6.1e-06 55.5 117 39.3
Nitab4.5_0001485g0070 Nicotiana tabacum HOM05D001316 ORTHO05D001113 6.1e-06 55.5 109 43.1
PSO478G1062 Papaver somniferum HOM05D001316 ORTHO05D001113 6.1e-06 55.5 112 39.3
SGA_v2.0_scaffold25G10946 Striga asiatica HOM05D001316 ORTHO05D001113 6.1e-06 55.5 110 41.8
Gorai.003G102000 Gossypium raimondii HOM05D001316 ORTHO05D001113 8.0e-06 55.1 110 39.1
Oeu048136.1 Olea europaea HOM05D001316 ORTHO05D001113 8.0e-06 55.1 117 39.3
Peaxi162Scf00166g00332 Petunia axillaris HOM05D001316 ORTHO05D001113 8.0e-06 55.1 110 42.7
SalBow4G1992 Salvia bowleyana HOM05D001316 ORTHO05D001113 8.0e-06 55.1 108 38.9
GSVIVG01000553001 Vitis vinifera HOM05D001316 ORTHO05D001113 8.0e-06 55.1 110 38.2


User provided reference genes

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