Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 0.0e+00 1358.2 802 100.0
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 0.0e+00 1241.1 788 95.1
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 9.3e-286 986.9 792 78.0
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 6.4e-194 681.8 775 64.6
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 1.4e-180 637.5 849 53.1
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 1.0e-170 604.7 758 59.4
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 8.4e-162 575.1 805 51.6
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 4.2e-161 572.8 837 52.1
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 3.8e-154 549.7 742 49.1
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 1.7e-149 534.3 799 48.8
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 2.9e-146 523.5 831 46.3
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 1.8e-143 514.2 843 47.0
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 2.6e-139 500.4 831 43.8
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 2.9e-138 496.9 845 47.8
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 2.2e-133 480.7 795 47.7
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 8.2e-133 478.8 753 45.3
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 7.0e-132 475.7 835 43.5
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 2.6e-131 473.8 835 43.4
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 5.9e-131 472.6 835 43.5
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 6.5e-130 469.2 757 43.6
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.2e-128 464.9 778 39.2
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 2.1e-128 464.2 753 42.8
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 2.7e-128 463.8 839 40.0
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 3.6e-128 463.4 817 42.1
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 6.8e-127 459.1 812 46.1
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 1.5e-126 458.0 776 41.5
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 9.8e-126 455.3 771 39.7
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 1.4e-124 451.4 789 38.8
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 7.7e-123 445.7 729 41.2
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 1.9e-121 441.0 715 44.5
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 5.5e-121 439.5 820 40.6
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 1.6e-120 438.0 830 40.2
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.7e-120 437.2 822 41.1
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 3.6e-120 436.8 863 38.9
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 1.4e-119 434.9 821 41.4
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 8.8e-119 432.2 827 38.5
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 5.7e-118 429.5 791 40.8
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 9.8e-118 428.7 821 40.0
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 2.4e-116 424.1 874 36.8
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 4.1e-116 423.3 794 40.1
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 4.5e-115 419.9 777 40.2
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 7.7e-115 419.1 751 46.2
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 1.7e-114 417.9 831 40.0
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 2.9e-114 417.2 824 41.4
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 3.8e-114 416.8 801 44.4
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 6.6e-114 416.0 817 44.9
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 6.6e-114 416.0 790 40.8
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 8.6e-114 415.6 819 38.7
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 3.3e-113 413.7 822 38.8
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 1.8e-111 407.9 766 46.1
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 6.8e-111 406.0 867 46.8
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 6.3e-109 399.4 771 43.2
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 1.8e-108 397.9 840 36.3
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 3.2e-108 397.1 783 37.2
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 9.2e-108 395.6 789 48.0
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 1.2e-107 395.2 845 38.7
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.7e-106 391.3 799 36.4
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 1.7e-106 391.3 832 36.4
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 6.6e-106 389.4 727 46.9
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 8.6e-106 389.0 757 37.4
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 4.0e-103 380.2 808 37.7
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 6.8e-103 379.4 872 43.6
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.3e-101 375.2 734 36.2
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 6.4e-101 372.9 733 36.8
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 6.4e-101 372.9 733 36.2
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 9.2e-100 369.0 731 37.2
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 2.7e-99 367.5 786 38.7
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 5.0e-98 363.2 806 35.7
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 6.6e-98 362.8 744 35.2
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 5.6e-97 359.8 775 37.2
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 8.1e-96 355.9 800 36.4
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 3.1e-95 354.0 828 34.9
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 1.2e-94 352.1 799 43.2
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 9.8e-94 349.0 738 35.2
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 1.3e-93 348.6 777 36.2
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 2.2e-93 347.8 730 42.7
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 1.1e-92 345.5 732 39.9
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 2.4e-92 344.4 820 37.7
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 3.2e-92 344.0 660 35.9
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 5.4e-92 343.2 769 34.2
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 7.1e-92 342.8 740 39.5
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 2.7e-91 340.9 740 39.3
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 3.5e-91 340.5 740 39.3
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 7.8e-91 339.3 738 40.0
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 5.1e-90 336.7 737 37.7
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 6.6e-90 336.3 749 32.8
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 1.6e-88 331.6 746 34.9
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 9.9e-86 322.4 787 37.4
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 1.3e-85 322.0 783 34.4
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 2.9e-85 320.9 787 34.6
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 3.7e-85 320.5 778 33.7
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 4.1e-84 317.0 756 31.9
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 2.1e-83 314.7 779 37.6
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 4.6e-83 313.5 776 32.5
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.0e-82 312.4 727 33.4
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 3.9e-82 310.5 733 33.2
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 2.5e-81 307.8 848 35.6
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 3.6e-80 303.9 658 39.1
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 2.6e-78 297.7 750 37.1
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 1.7e-77 295.0 822 32.1
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.4e-76 292.0 738 31.6
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 7.1e-76 289.7 815 34.4
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 3.5e-75 287.3 800 33.0
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 3.9e-74 283.9 853 31.4
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 1.1e-71 275.8 810 39.8
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 5.8e-70 270.0 898 30.8
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 6.6e-66 256.5 877 30.2
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.4e-63 248.8 786 30.5
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 4.5e-62 243.8 315 49.2
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.3e-61 242.3 741 27.9
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 1.7e-61 241.9 723 31.8
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 2.2e-61 241.5 423 43.0
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 9.3e-60 236.1 589 40.1
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 2.3e-58 231.5 798 30.2
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 8.1e-56 223.0 278 48.6
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 9.0e-55 219.5 286 44.1
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.1e-52 212.6 738 29.3
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 1.8e-47 195.3 814 26.8
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 3.1e-47 194.5 276 44.6
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 3.9e-42 177.6 174 48.3
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 4.1e-39 167.5 237 41.4
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 7.7e-38 163.3 354 42.1
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.4e-36 159.1 186 45.2
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 1.0e-34 152.9 144 50.7
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 2.2e-32 145.2 185 44.9
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 6.3e-32 143.7 772 24.1
FvH4_4g03480 Fragaria vesca HOM05D014995 ORTHO05D029569 4.2e-28 131.0 143 53.8
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 5.5e-28 130.6 437 31.6
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 4.7e-27 127.5 137 51.8
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 6.3e-24 117.1 371 31.8
FAN12G1500 Fragaria x ananassa HOM05D005245 ORTHO05D029569 8.2e-24 116.7 62 90.3
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 3.1e-23 114.8 832 30.2
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.2e-22 112.8 228 32.5
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 1.2e-22 112.8 417 30.2
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 1.7e-21 109.0 210 33.8
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 9.4e-20 103.2 75 76.0
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 8.8e-18 96.7 162 42.6
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 3.2e-12 78.2 133 36.8
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 9.4e-12 76.6 207 30.4
RcHm_v2.0_Chr7g0185071 Rosa chinensis HOM05D005245 ORTHO05D006388 4.5e-06 57.8 51 62.7
Ah.09g225920 Amaranthus hybridus HOM05D005245 ORTHO05D006388 5.9e-06 57.4 91 35.2


User provided reference genes

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