Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.0e-118 429.1 216 100.0
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.0e-114 416.8 216 96.8
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.8e-114 413.7 216 95.8
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 6.9e-111 404.1 216 94.0
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.9e-111 404.1 216 94.0
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.9e-111 404.1 216 94.0
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 8.5e-101 370.5 217 86.2
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 1.0e-77 293.9 218 72.0
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.2e-73 280.4 212 70.3
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 3.0e-61 239.2 186 67.2
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 1.4e-58 230.3 214 62.6
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 7.5e-57 224.6 196 64.8
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 9.8e-57 224.2 215 61.4
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 1.7e-56 223.4 215 62.8
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 6.4e-56 221.5 218 61.5
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 8.3e-56 221.1 215 59.5
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.1e-55 220.7 211 59.2
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 3.2e-55 219.2 208 58.2
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 3.5e-54 215.7 214 58.9
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.0e-54 214.9 215 58.6
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 1.7e-53 213.4 212 60.4
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 3.3e-52 209.1 212 58.0
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.6e-52 208.4 215 57.7
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 9.5e-52 207.6 215 58.1
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 3.6e-51 205.7 204 59.3
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 3.6e-51 205.7 216 56.5
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 3.6e-51 205.7 212 57.5
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 6.2e-51 204.9 215 56.7
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.8e-50 203.4 215 57.2
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 8.9e-50 201.1 218 57.3
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 8.9e-50 201.1 210 56.7
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.6e-49 199.5 203 54.7
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 9.9e-49 197.6 215 54.4
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 9.9e-49 197.6 218 55.0
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 2.2e-48 196.4 237 52.3
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.4e-48 194.9 215 54.4
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 5.4e-47 191.8 218 55.5
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.0e-45 187.6 204 52.0
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.3e-45 187.2 216 53.7
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 1.7e-45 186.8 206 54.9
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 6.6e-45 184.9 210 55.2
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 8.6e-45 184.5 217 52.5
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.1e-44 184.1 196 57.7
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 1.1e-44 184.1 216 54.2
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 4.3e-44 182.2 189 56.6
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.4e-42 177.2 213 51.2
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.8e-42 176.8 207 54.1
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 2.4e-42 176.4 190 55.3
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 8.9e-42 174.5 199 58.8
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 8.9e-42 174.5 225 50.2
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 8.9e-42 174.5 214 50.5
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 1.2e-41 174.1 221 52.0
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 3.4e-41 172.6 227 47.6
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.4e-41 172.6 196 52.0
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 4.4e-41 172.2 231 48.1
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 9.9e-41 171.0 218 51.4
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.3e-40 170.6 203 50.2
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.2e-40 169.9 216 49.5
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 2.9e-40 169.5 216 49.5
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 4.2e-39 165.6 211 51.7
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 5.4e-39 165.2 225 46.2
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 5.4e-39 165.2 212 49.1
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 5.4e-39 165.2 209 47.4
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 7.1e-39 164.9 218 49.1
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.6e-38 163.7 216 47.2
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 2.7e-38 162.9 217 47.9
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 3.5e-38 162.5 206 49.0
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 3.5e-38 162.5 193 52.8
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 4.6e-38 162.2 231 47.2
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.0e-37 161.0 214 47.7
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.0e-37 161.0 224 46.9
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.3e-37 160.6 215 49.8
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.3e-37 160.6 204 49.0
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 2.3e-37 159.8 216 49.5
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 2.3e-37 159.8 227 47.1
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 3.0e-37 159.5 224 46.9
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.1e-36 157.5 226 49.6
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 1.1e-36 157.5 212 48.6
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 1.1e-36 157.5 219 47.0
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 2.5e-36 156.4 215 48.4
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 5.6e-36 155.2 217 50.7
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 5.6e-36 155.2 224 47.3
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 7.3e-36 154.8 207 50.7
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 7.3e-36 154.8 223 44.8
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.3e-35 154.1 200 51.0
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 1.3e-35 154.1 194 52.1
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 2.1e-35 153.3 226 46.0
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 4.8e-35 152.1 215 47.9
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 6.2e-35 151.8 215 48.4
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 8.1e-35 151.4 215 44.2
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 8.1e-35 151.4 227 44.5
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.1e-34 151.0 196 51.5
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.4e-34 149.8 220 44.5
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 4.0e-34 149.1 204 47.5
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 6.9e-34 148.3 221 47.1
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 9.0e-34 147.9 158 51.9
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 9.0e-34 147.9 204 48.5
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 2.0e-33 146.7 124 64.5
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 2.0e-33 146.7 215 45.6
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 5.8e-33 145.2 195 49.2
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 9.9e-33 144.4 210 46.2
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.3e-32 144.1 202 50.0
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 1.7e-32 143.7 207 44.9
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.7e-32 143.7 216 46.8
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 2.2e-32 143.3 194 47.4
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 2.2e-32 143.3 204 46.1
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.2e-32 143.3 207 47.3
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 3.8e-32 142.5 218 41.7
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 3.8e-32 142.5 225 44.4
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.1e-31 141.0 217 45.2
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.1e-31 141.0 195 44.1
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.1e-31 141.0 212 46.7
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.1e-31 141.0 212 46.7
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 3.2e-31 139.4 227 43.2
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 4.2e-31 139.0 219 45.7
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 5.4e-31 138.7 219 45.7
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 1.6e-30 137.1 228 41.7
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 6.0e-30 135.2 197 46.2
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 7.9e-30 134.8 205 42.4
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 1.0e-29 134.4 198 45.5
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.8e-29 133.7 152 50.7
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 1.8e-29 133.7 154 50.0
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 2.3e-29 133.3 195 44.6
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.3e-29 133.3 198 43.4
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 3.0e-29 132.9 198 43.9
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 3.9e-29 132.5 190 46.3
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 5.1e-29 132.1 190 46.3
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 8.7e-29 131.3 203 44.3
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 1.5e-28 130.6 204 45.6
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.5e-28 130.6 193 43.5
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 1.5e-28 130.6 204 45.6
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.5e-28 130.6 193 43.5
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 1.9e-28 130.2 205 45.4
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 2.5e-28 129.8 199 43.2
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 3.3e-28 129.4 188 44.7
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 3.3e-28 129.4 202 44.6
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 5.6e-28 128.6 176 45.5
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 5.6e-28 128.6 133 54.9
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.3e-27 127.5 169 45.0
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.6e-27 127.1 189 43.9
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 1.1e-26 124.4 187 42.8
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.4e-26 124.0 188 44.1
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 3.1e-26 122.9 194 43.3
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 5.3e-26 122.1 118 61.0
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 6.9e-26 121.7 193 44.6
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 9.0e-26 121.3 191 42.4
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.2e-25 120.9 194 42.8
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 2.6e-25 119.8 192 42.7
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 5.8e-25 118.6 193 40.4
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 9.9e-25 117.9 187 43.3
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 9.9e-25 117.9 206 43.7
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 1.3e-24 117.5 184 42.9
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.7e-24 117.1 189 43.4
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 2.2e-24 116.7 149 48.3
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.8e-24 115.9 215 39.5
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.1e-23 114.4 200 39.5
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 1.4e-23 114.0 187 41.7
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 3.2e-23 112.8 184 40.2
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.5e-22 109.4 272 33.8
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 4.6e-22 109.0 146 46.6
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 7.9e-22 108.2 145 46.9
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 1.0e-21 107.8 184 39.1
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 3.0e-21 106.3 135 46.7
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.5e-20 104.0 117 50.4
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.5e-20 103.2 195 40.0
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.6e-19 100.5 140 43.6
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 6.2e-19 98.6 128 46.9
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 3.8e-16 89.4 173 35.3
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 3.8e-16 89.4 173 35.8
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.5e-16 88.6 107 50.5
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 1.9e-15 87.0 192 34.9
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 4.2e-15 85.9 193 34.7
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 9.3e-15 84.7 199 36.7
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 9.3e-15 84.7 154 39.6
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 2.1e-14 83.6 194 34.5
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 3.5e-14 82.8 193 33.7
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 3.5e-14 82.8 193 34.2
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 4.6e-14 82.4 207 36.2
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 7.9e-14 81.6 193 33.2
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 6.7e-13 78.6 89 47.2
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 3.7e-11 72.8 199 34.7
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 8.2e-11 71.6 205 29.3
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.2e-09 67.8 61 59.0
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 5.0e-08 62.4 167 32.3


User provided reference genes

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