Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0506 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.6e-173 611.7 354 100.0
FAN09G3614 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.0e-143 513.8 388 73.7
FvH4_4g12912 Fragaria vesca HOM05D007743 ORTHO05D004645 6.0e-112 408.3 368 66.3
FvH4_2g00671 Fragaria vesca HOM05D007743 ORTHO05D004645 7.0e-76 288.5 227 72.2
FvH4_1g29461 Fragaria vesca HOM05D007743 ORTHO05D010219 1.1e-68 264.6 204 73.5
FAN19G3162 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.6e-64 250.8 184 76.6
FAN08G2536 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.0e-63 246.1 323 49.2
FAN05G2464 Fragaria x ananassa HOM05D007743 ORTHO05D004645 5.2e-63 245.7 323 49.2
FAN08G2971 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.2e-62 244.6 323 48.9
FAN09G0033 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.2e-62 244.6 323 48.9
FAN18G3916 Fragaria x ananassa HOM05D007743 ORTHO05D004645 5.7e-62 242.3 323 48.6
FAN26G1874 Fragaria x ananassa HOM05D007743 ORTHO05D004645 5.7e-62 242.3 332 48.8
FAN26G1586 Fragaria x ananassa HOM05D007743 ORTHO05D004645 8.3e-61 238.4 317 49.2
FAN04G2392 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.2e-56 224.6 356 44.7
FAN24G2509 Fragaria x ananassa HOM05D007743 ORTHO05D004645 2.3e-55 220.3 292 49.3
FvH4_1g29460 Fragaria vesca HOM05D007743 ORTHO05D045698 2.0e-54 217.2 155 80.0
FAN19G0066 Fragaria x ananassa HOM05D007743 ORTHO05D045698 1.5e-49 201.1 155 76.1
FvH4_2g02401 Fragaria vesca HOM05D007743 ORTHO05D010219 4.0e-47 193.0 275 48.0
FAN18G2940 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.9e-42 176.4 266 45.1
FAN09G4280 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.3e-41 172.9 244 46.7
RcHm_v2.0_Chr6g0296991 Rosa chinensis HOM05D007743 ORTHO05D004645 7.3e-41 172.2 283 43.5
FvH4_5g35255 Fragaria vesca HOM05D007743 ORTHO05D004645 1.8e-39 167.5 149 68.5
FAN18G0762 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.5e-30 137.9 79 84.8
FAN18G0907 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.1e-28 131.7 127 64.6
FAN18G0507 Fragaria x ananassa HOM05D007743 ORTHO05D004645 5.4e-28 129.4 167 50.3
FAN17G0227 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.0e-26 123.6 301 34.2
FAN13G0835 Fragaria x ananassa HOM05D007743 ORTHO05D004645 9.5e-25 118.6 249 36.9
RcHm_v2.0_Chr2g0144051 Rosa chinensis HOM05D007743 ORTHO05D010219 4.2e-20 103.2 68 72.1
RcHm_v2.0_Chr5g0049061 Rosa chinensis HOM05D007743 ORTHO05D010219 4.2e-20 103.2 68 72.1
CSS0032344 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 1.5e-17 94.7 317 29.7
FAN06G3708 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.5e-17 94.7 132 44.7
CANSAT35G0055 Cannabis sativa HOM05D007592 ORTHO05D004645 1.2e-16 91.7 264 30.7
CSS0013406 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 2.1e-16 90.9 317 29.7
DCAR_018612 Daucus carota HOM05D007592 ORTHO05D004645 2.8e-16 90.5 290 30.0
BraA09t38299Z Brassica rapa HOM05D007592 ORTHO05D004645 1.8e-15 87.8 265 31.3
Rhsim08G0115200 Rhododendron simsii HOM05D007743 ORTHO05D004645 2.4e-15 87.4 310 29.0
BolC6t37310H Brassica oleracea HOM05D007592 ORTHO05D004645 4.0e-15 86.7 265 30.9
FAN01G1375 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.0e-15 86.7 84 54.8
FAN02G2674 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.0e-15 86.7 84 54.8
FAN03G2901 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.0e-15 86.7 84 54.8
FAN05G3774 Fragaria x ananassa HOM05D000550 ORTHO05D000400 4.0e-15 86.7 84 54.8
FAN07G2184 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.0e-15 86.7 84 54.8
FAN13G2887 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.0e-15 86.7 84 54.8
FAN14G0024 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.0e-15 86.7 84 54.8
FAN25G3322 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.0e-15 86.7 84 54.8
FAN27G1827 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.0e-15 86.7 84 54.8
Atru.chr11.101 Acer truncatum HOM05D007592 ORTHO05D004645 9.0e-15 85.5 280 31.1
FAN10G0736 Fragaria x ananassa HOM05D007743 ORTHO05D004645 9.0e-15 85.5 84 54.8
Atru.chr10.1040 Acer truncatum HOM05D007592 ORTHO05D004645 1.2e-14 85.1 294 27.9
AT1G24380 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 1.2e-14 85.1 253 30.4
FAN08G1457 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.4e-14 83.6 125 43.2
FAN18G4170 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.4e-14 83.2 84 53.6
Manes.13G090650 Manihot esculenta HOM05D007592 ORTHO05D004645 5.8e-14 82.8 271 28.4
CARHR029530 Cardamine hirsuta HOM05D007592 ORTHO05D004645 1.7e-13 81.3 300 27.7
Atru.chr5.2435 Acer truncatum HOM05D007743 ORTHO05D004645 3.8e-13 80.1 291 27.8
Oeu029633.1 Olea europaea HOM05D007592 ORTHO05D004645 6.4e-13 79.3 243 30.0
CARHR258700 Cardamine hirsuta HOM05D007592 ORTHO05D004645 1.4e-12 78.2 280 26.8
Thhalv10019741m.g Eutrema salsugineum HOM05D007592 ORTHO05D004645 1.4e-12 78.2 245 29.0
AL6G36070 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 5.4e-12 76.3 247 31.2
AT4G10230 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 2.1e-11 74.3 235 30.2
Ciclev10023446m.g Citrus clementina HOM05D007592 ORTHO05D004645 2.1e-11 74.3 235 30.2
C06p21250 Brassica napus HOM05D007592 ORTHO05D004645 1.0e-10 72.0 229 31.9
FvH4_5g16793 Fragaria vesca HOM05D007743 ORTHO05D004645 1.0e-10 72.0 75 50.7
Carub.0004s0678 Capsella rubella HOM05D007592 ORTHO05D004645 5.1e-10 69.7 297 27.9
DCAR_001490 Daucus carota HOM05D007592 ORTHO05D004645 6.6e-10 69.3 243 29.2
Manes.09G090928 Manihot esculenta HOM05D007592 ORTHO05D004645 6.6e-10 69.3 292 24.0
CANSAT25G1186 Cannabis sativa HOM05D007592 ORTHO05D004645 8.7e-10 68.9 134 34.3
Manes.04G041320 Manihot esculenta HOM05D007592 ORTHO05D004645 1.9e-09 67.8 280 27.1
BolC1t03512H Brassica oleracea HOM05D007592 ORTHO05D014827 3.3e-09 67.0 92 39.1
Atru.ctg24.16 Acer truncatum HOM05D007592 ORTHO05D004645 1.3e-08 65.1 128 36.7
Ciclev10033648m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.6e-08 64.7 186 32.3
Ciclev10016612m.g Citrus clementina HOM05D007592 ORTHO05D004645 2.1e-08 64.3 229 28.4
Atru.chr8.1611 Acer truncatum HOM05D007592 ORTHO05D004645 2.8e-08 63.9 200 30.0
CARHR103730 Cardamine hirsuta HOM05D007592 ORTHO05D004645 2.8e-08 63.9 268 25.4
CANSAT64G2577 Cannabis sativa HOM05D007592 ORTHO05D004645 3.6e-08 63.5 223 29.6
FAN09G2025 Fragaria x ananassa HOM05D007743 ORTHO05D004645 6.2e-08 62.8 69 49.3
Manes.01G069750 Manihot esculenta HOM05D007592 ORTHO05D004645 1.1e-07 62.0 209 29.7
TWI73G0420 Tripterygium wilfordii HOM05D001576 ORTHO05D000401 1.1e-07 62.0 139 31.7
Atru.chr6.863 Acer truncatum HOM05D007592 ORTHO05D004645 1.4e-07 61.6 192 31.2
CANSAT11G1366 Cannabis sativa HOM05D007592 ORTHO05D004645 1.8e-07 61.2 102 40.2
AL8G44460 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 3.1e-07 60.5 200 32.5
CiPaw.14G077500 Carya illinoinensis HOM05D001576 ORTHO05D000401 9.0e-07 58.9 219 25.6
Atru.chr11.1181 Acer truncatum HOM05D000214 ORTHO05D000131 1.5e-06 58.2 93 40.9
CiPaw.10G155100 Carya illinoinensis HOM05D001576 ORTHO05D000401 2.0e-06 57.8 100 35.0
Atru.chr12.1217 Acer truncatum HOM05D007592 ORTHO05D004645 2.6e-06 57.4 199 27.1
BcaB01g01748 Brassica carinata HOM05D007743 ORTHO05D004645 2.6e-06 57.4 112 33.0
Ciclev10003711m.g Citrus clementina HOM05D007592 ORTHO05D004645 2.6e-06 57.4 71 49.3
Ciclev10027215m.g Citrus clementina HOM05D007592 ORTHO05D004645 2.6e-06 57.4 241 28.6
Manes.07G048750 Manihot esculenta HOM05D007592 ORTHO05D004645 2.6e-06 57.4 209 28.7
Manes.14G157656 Manihot esculenta HOM05D007743 ORTHO05D010219 2.6e-06 57.4 106 31.1
BcaB07g33427 Brassica carinata HOM05D007743 ORTHO05D004645 3.4e-06 57.0 112 33.0
Ciclev10018206m.g Citrus clementina HOM05D001576 ORTHO05D000401 3.4e-06 57.0 120 30.0
AL2G23940 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 4.5e-06 56.6 195 27.7
CiPaw.07G184900 Carya illinoinensis HOM05D001576 ORTHO05D000401 5.8e-06 56.2 91 36.3
BcaC08g43897 Brassica carinata HOM05D007743 ORTHO05D004645 7.6e-06 55.8 103 31.1
Manes.12G071166 Manihot esculenta HOM05D007743 ORTHO05D010219 7.6e-06 55.8 105 32.4
BcaB06g28792 Brassica carinata HOM05D007743 ORTHO05D004645 9.9e-06 55.5 132 28.8


User provided reference genes

Program Settings