Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.0e-252 876.3 471 100.0
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.5e-230 802.0 455 94.5
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.9e-226 788.5 428 98.4
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.9e-217 759.2 428 95.3
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 1.9e-206 722.6 428 92.1
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.2e-192 676.8 413 90.8
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 1.5e-126 457.2 446 62.3
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 3.0e-119 433.0 441 61.7
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 1.6e-104 384.0 464 53.9
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 1.6e-99 367.5 466 53.2
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 9.5e-97 358.2 459 52.9
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 8.1e-96 355.1 467 51.8
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 3.4e-94 349.7 480 51.7
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 5.8e-94 349.0 482 50.6
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.3e-93 347.8 459 52.9
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 7.1e-92 342.0 463 52.3
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 1.2e-91 341.3 464 52.6
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 2.1e-91 340.5 456 50.9
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 2.1e-91 340.5 471 49.9
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 6.0e-91 339.0 459 51.9
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 1.1e-89 334.7 463 49.9
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 7.3e-89 332.0 461 48.6
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 2.1e-88 330.5 450 50.9
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 3.6e-88 329.7 453 51.2
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 4.7e-88 329.3 478 49.4
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 1.4e-87 327.8 438 48.9
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 1.4e-87 327.8 438 48.9
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 8.9e-87 325.1 479 50.3
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 7.6e-86 322.0 458 48.3
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 1.7e-85 320.9 458 48.0
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 2.9e-85 320.1 528 45.5
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 3.2e-84 316.6 472 48.7
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 2.1e-83 313.9 478 49.2
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 3.5e-83 313.2 454 50.0
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 3.0e-82 310.1 459 51.4
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 3.9e-82 309.7 477 45.7
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 4.3e-81 306.2 382 50.5
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 7.3e-81 305.4 278 61.5
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 2.1e-80 303.9 458 44.8
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 2.8e-80 303.5 479 45.7
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 4.7e-80 302.8 453 45.9
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 4.0e-79 299.7 348 52.9
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 3.4e-78 296.6 388 50.8
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 7.6e-78 295.4 497 46.1
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 1.7e-77 294.3 467 48.4
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 6.4e-77 292.4 428 45.6
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.4e-76 291.2 463 47.3
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 2.4e-76 290.4 448 44.6
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 1.2e-75 288.1 461 48.4
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 1.6e-75 287.7 407 48.2
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 1.6e-75 287.7 455 44.6
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 6.0e-75 285.8 320 53.8
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 1.0e-74 285.0 458 44.5
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 1.3e-74 284.6 434 45.9
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 1.7e-74 284.3 434 45.9
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 2.3e-74 283.9 437 45.8
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 1.5e-73 281.2 439 45.3
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 2.5e-73 280.4 446 46.0
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 5.6e-73 279.3 616 41.1
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 7.3e-73 278.9 456 45.2
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 7.3e-73 278.9 439 44.6
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 9.6e-73 278.5 448 45.5
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 9.6e-73 278.5 464 43.8
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 9.6e-73 278.5 451 45.9
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 9.6e-73 278.5 475 45.9
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 1.6e-72 277.7 434 45.4
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 2.1e-72 277.3 442 44.1
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 2.1e-72 277.3 442 44.8
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 2.8e-72 276.9 402 45.5
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 6.2e-72 275.8 402 45.5
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 8.1e-72 275.4 441 44.2
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.4e-71 274.6 446 45.3
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 2.4e-71 273.9 476 45.6
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 6.9e-71 272.3 480 44.6
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 1.5e-70 271.2 508 43.5
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 1.5e-70 271.2 411 43.8
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 5.8e-70 269.2 453 43.5
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 2.2e-69 267.3 464 44.2
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 4.9e-69 266.2 444 46.4
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 4.9e-69 266.2 449 43.7
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 1.1e-68 265.0 413 44.6
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 1.4e-68 264.6 404 45.8
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.9e-68 264.2 441 43.3
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 1.9e-68 264.2 382 46.6
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 2.4e-68 263.8 382 46.3
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 3.2e-68 263.5 427 45.7
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 4.2e-68 263.1 441 43.8
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 1.6e-67 261.2 431 43.4
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 2.7e-67 260.4 438 44.5
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 6.0e-67 259.2 447 42.7
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 1.0e-66 258.5 454 45.4
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 1.0e-66 258.5 434 46.3
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.3e-66 258.1 453 41.7
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 1.3e-66 258.1 439 44.9
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 3.0e-66 256.9 473 40.4
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 3.9e-66 256.5 426 42.7
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 1.1e-65 255.0 462 44.6
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 1.1e-65 255.0 466 43.8
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.5e-65 254.6 473 43.6
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 1.9e-65 254.2 440 43.2
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 4.3e-65 253.1 399 45.4
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 5.6e-65 252.7 244 59.4
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 7.4e-65 252.3 473 40.6
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 9.6e-65 251.9 352 48.6
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 1.1e-63 248.4 362 48.6
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 1.4e-63 248.1 381 44.9
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 2.4e-63 247.3 471 43.5
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 2.4e-63 247.3 357 48.5
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 2.4e-63 247.3 458 42.6
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 3.1e-63 246.9 362 44.8
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 1.3e-61 241.5 413 40.4
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 2.2e-61 240.7 530 38.5
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 4.9e-61 239.6 451 45.7
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 4.9e-61 239.6 345 44.6
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 6.4e-61 239.2 487 39.2
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 1.9e-60 237.7 424 41.3
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 5.5e-60 236.1 410 43.4
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 7.1e-60 235.7 416 40.1
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.6e-59 233.0 377 43.8
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 4.3e-57 226.5 468 42.3
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 1.3e-56 224.9 294 48.0
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 1.5e-54 218.0 430 39.8
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 2.6e-54 217.2 393 42.2
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 3.4e-54 216.9 229 55.9
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 1.7e-53 214.5 426 38.0
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 3.2e-52 210.3 134 82.8
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 9.3e-52 208.8 148 74.3
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 1.2e-51 208.4 388 39.2
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 8.2e-48 195.7 121 81.8
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 8.2e-48 195.7 121 81.8
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 1.7e-45 188.0 101 90.1
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.2e-45 187.6 124 78.2
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 9.4e-44 182.2 133 70.7
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 9.4e-44 182.2 133 70.7
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 2.2e-40 171.0 300 41.3
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 6.3e-40 169.5 342 39.2
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 4.2e-36 156.8 95 81.1
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 8.8e-34 149.1 312 41.0
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 3.1e-31 140.6 76 90.8
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 2.0e-30 137.9 143 49.0
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 1.7e-29 134.8 141 51.1
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 2.9e-29 134.0 298 38.6
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 2.4e-23 114.4 124 52.4
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 3.1e-23 114.0 64 87.5
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 7.7e-22 109.4 331 32.6
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 8.5e-21 105.9 58 87.9
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 9.4e-20 102.4 299 38.1
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 6.1e-19 99.8 63 79.4
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 3.0e-18 97.4 111 46.8
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 9.8e-17 92.4 120 45.8
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 7.0e-15 86.3 61 68.9
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 9.1e-15 85.9 306 32.0
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 3.5e-14 84.0 92 52.2
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 1.3e-13 82.0 119 42.0
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 3.0e-10 70.9 34 94.1
Cfa001908 Carpinus fangiana HOM05D003936 ORTHO05D004747 4.4e-09 67.0 297 32.3
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 3.7e-08 63.9 73 50.7
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 8.3e-08 62.8 67 52.2
FAN02G3314 Fragaria x ananassa HOM05D008754 ORTHO05D013321 1.4e-07 62.0 81 46.9
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 1.8e-07 61.6 34 76.5
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 7.0e-07 59.7 50 58.0
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 2.0e-06 58.2 83 42.2
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 2.7e-06 57.8 94 33.0
EL10Ac4g08132 Beta vulgaris HOM05D003936 ORTHO05D004747 4.5e-06 57.0 47 55.3
EL10Ac4g08139 Beta vulgaris HOM05D003936 ORTHO05D004747 4.5e-06 57.0 47 55.3
EL10Ac4g09849 Beta vulgaris HOM05D003936 ORTHO05D004747 4.5e-06 57.0 47 55.3


User provided reference genes

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