Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.8e-143 511.9 257 100.0
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 1.6e-138 496.1 257 97.7
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.0e-137 491.9 257 96.9
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.3e-135 486.5 257 95.7
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 7.0e-126 454.1 232 99.1
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.5e-124 447.2 232 97.0
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.9e-123 446.0 232 97.0
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 3.4e-112 408.7 258 80.2
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 6.8e-89 331.3 258 66.7
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 3.6e-82 308.9 261 60.2
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 8.9e-81 304.3 256 62.1
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 7.5e-80 301.2 236 66.5
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 4.1e-78 295.4 269 61.0
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 1.5e-75 287.0 255 57.3
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 1.5e-75 287.0 249 59.4
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 3.3e-75 285.8 253 57.3
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 4.3e-75 285.4 258 60.5
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 9.5e-75 284.3 248 58.9
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 1.2e-74 283.9 260 58.8
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 1.2e-74 283.9 276 55.8
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 1.2e-74 283.9 265 58.9
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 1.6e-74 283.5 248 58.9
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 2.1e-74 283.1 274 56.6
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 2.1e-74 283.1 264 58.3
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 2.8e-74 282.7 248 58.9
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 4.7e-74 282.0 255 55.7
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 8.1e-74 281.2 253 58.9
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 2.3e-73 279.6 255 58.0
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 8.9e-73 277.7 255 57.3
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 1.2e-72 277.3 255 57.6
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 1.2e-72 277.3 254 54.7
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 1.2e-72 277.3 245 58.0
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 1.2e-72 277.3 266 56.0
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 2.0e-72 276.6 254 58.3
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 9.9e-72 274.2 249 58.2
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 2.9e-71 272.7 254 58.3
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 1.4e-70 270.4 257 57.2
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 1.4e-70 270.4 257 57.2
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 1.4e-70 270.4 257 57.2
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 2.4e-70 269.6 254 57.1
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 2.4e-70 269.6 254 57.5
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 2.4e-70 269.6 254 57.5
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 4.1e-70 268.9 236 58.9
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 5.4e-70 268.5 266 53.0
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 7.1e-70 268.1 249 55.8
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 6.0e-69 265.0 252 55.6
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 1.0e-68 264.2 276 51.8
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 2.5e-67 259.6 271 50.6
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 9.6e-67 257.7 278 51.8
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 1.1e-65 254.2 271 50.2
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 1.1e-65 254.2 261 52.5
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 1.1e-65 254.2 266 51.5
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 1.1e-65 254.2 272 51.5
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 1.8e-65 253.4 261 55.2
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 1.8e-65 253.4 191 67.5
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 2.4e-65 253.1 261 52.1
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 2.4e-65 253.1 259 53.3
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 3.1e-65 252.7 276 48.6
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 4.0e-65 252.3 254 55.9
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 4.0e-65 252.3 261 52.5
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 1.5e-64 250.4 265 53.2
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 4.4e-64 248.8 223 56.1
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 4.4e-64 248.8 262 51.5
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 4.4e-64 248.8 233 56.7
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 3.8e-63 245.7 235 56.6
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 1.1e-62 244.2 264 52.3
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 1.1e-62 244.2 269 51.7
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 1.9e-62 243.4 261 50.6
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 4.2e-62 242.3 254 52.4
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 7.1e-62 241.5 251 52.6
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 2.1e-61 240.0 231 58.0
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 3.5e-61 239.2 265 49.8
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 3.5e-61 239.2 264 50.4
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 6.0e-61 238.4 265 50.9
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 7.8e-61 238.0 267 49.8
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 1.0e-60 237.7 254 53.1
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 1.3e-60 237.3 261 51.0
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 1.3e-60 237.3 261 51.0
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 3.0e-60 236.1 253 50.6
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 5.1e-60 235.3 219 56.6
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 3.3e-59 232.6 262 49.6
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 5.6e-59 231.9 257 49.0
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 7.3e-59 231.5 261 49.4
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 7.3e-59 231.5 266 49.6
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 7.3e-59 231.5 264 48.9
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 3.6e-58 229.2 252 52.0
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 5.3e-57 225.3 269 47.6
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 9.0e-57 224.6 254 47.2
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 3.4e-56 222.6 255 48.6
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 7.6e-56 221.5 254 51.2
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 9.9e-56 221.1 268 48.5
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 2.2e-55 219.9 265 48.3
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 1.2e-53 214.2 252 49.2
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 2.3e-52 209.9 251 48.2
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 6.7e-52 208.4 268 47.0
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 1.9e-51 206.8 195 54.9
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 9.6e-51 204.5 263 45.6
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 2.8e-50 203.0 136 73.5
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 3.7e-50 202.6 267 45.3
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 4.8e-50 202.2 247 47.0
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 4.8e-50 202.2 215 52.6
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 1.4e-49 200.7 249 49.8
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 2.4e-49 199.9 250 44.8
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 4.0e-49 199.1 269 45.7
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 5.8e-48 195.3 255 46.7
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.3e-47 194.1 216 50.5
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 1.7e-47 193.7 256 48.0
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 1.9e-43 180.3 226 48.2
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 1.9e-43 180.3 226 48.2
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.3e-42 177.6 228 43.9
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 1.6e-42 177.2 216 47.7
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 2.6e-40 169.9 195 45.6
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 6.0e-37 158.7 144 60.4
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 1.3e-36 157.5 263 40.3
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 2.5e-35 153.3 136 58.1
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 3.3e-35 152.9 178 48.9
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 4.3e-35 152.5 179 50.3
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 7.4e-35 151.8 338 32.5
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 8.2e-34 148.3 329 35.6
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 1.3e-31 141.0 90 71.1
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 3.8e-31 139.4 175 46.9
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 1.6e-29 134.0 343 29.7
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 4.3e-27 125.9 201 38.8
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 1.3e-26 124.4 136 51.5
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 1.6e-26 124.0 233 36.9
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 6.3e-26 122.1 209 38.8
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 1.8e-25 120.6 132 51.5
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 2.2e-23 113.6 114 50.0
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 2.2e-23 113.6 105 57.1
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 2.9e-23 113.2 66 87.9
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 5.0e-23 112.5 314 30.6
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 5.5e-22 109.0 153 39.9
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 3.1e-17 93.2 124 44.4
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 1.5e-16 90.9 113 48.7
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 1.0e-12 78.2 162 32.7
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 5.2e-12 75.9 46 71.7
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 2.0e-11 73.9 92 45.7
MD12G1248100 Malus domestica HOM05D004964 ORTHO05D005918 2.2e-10 70.5 90 48.9
MD12G1248900 Malus domestica HOM05D004964 ORTHO05D005918 2.6e-08 63.5 59 59.3
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 1.3e-07 61.2 59 49.2
SEGI_33500 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 2.2e-07 60.5 102 38.2


User provided reference genes

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