Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.0e-82 308.9 145 100.0
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 2.3e-78 295.4 145 95.9
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.3e-78 295.4 145 95.9
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.8e-77 290.8 146 95.2
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 6.0e-66 254.2 134 88.1
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.6e-65 250.4 147 80.3
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.5e-64 248.8 143 82.5
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.3e-64 248.1 143 81.8
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 2.1e-63 245.7 143 81.8
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 3.7e-60 235.0 134 83.6
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 2.7e-58 228.8 144 75.0
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 1.3e-57 226.5 143 73.4
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 1.3e-57 226.5 143 73.4
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 1.3e-57 226.5 143 73.4
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 5.1e-57 224.6 142 71.1
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.1e-57 224.6 142 71.1
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 8.6e-57 223.8 136 74.3
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 8.6e-57 223.8 143 72.0
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 4.3e-56 221.5 136 74.3
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 7.3e-56 220.7 136 75.7
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 4.7e-55 218.0 140 70.7
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 8.1e-55 217.2 140 70.7
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 1.8e-54 216.1 142 71.8
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 3.1e-54 215.3 139 70.5
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 8.9e-54 213.8 143 67.1
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 3.4e-53 211.8 137 67.9
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 5.8e-53 211.1 134 73.1
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 5.8e-53 211.1 139 69.1
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 7.6e-53 210.7 136 69.1
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 9.9e-53 210.3 98 95.9
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 2.2e-52 209.1 140 67.1
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.2e-52 209.1 140 67.1
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.9e-52 208.0 140 66.4
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 6.4e-52 207.6 138 68.8
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 8.4e-52 207.2 136 71.3
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.4e-51 206.5 138 66.7
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.4e-51 206.5 138 66.7
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 2.4e-51 205.7 136 66.2
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 2.4e-51 205.7 139 70.5
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 2.4e-51 205.7 143 64.3
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 4.1e-51 204.9 139 66.9
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 7.1e-51 204.1 141 68.8
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 1.6e-50 203.0 139 66.9
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 1.6e-50 203.0 150 64.7
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.1e-50 202.6 212 51.4
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 2.1e-50 202.6 139 67.6
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 2.7e-50 202.2 150 64.7
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 2.7e-50 202.2 136 64.7
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 3.5e-50 201.8 140 64.3
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 4.6e-50 201.4 135 67.4
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 7.8e-50 200.7 135 65.9
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 7.8e-50 200.7 135 68.1
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 7.8e-50 200.7 142 67.6
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.0e-49 200.3 135 65.9
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.0e-49 200.3 136 66.9
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 1.0e-49 200.3 143 65.0
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 1.3e-49 199.9 138 65.9
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 1.7e-49 199.5 138 68.8
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 3.9e-49 198.4 135 64.4
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 3.9e-49 198.4 135 64.4
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 5.1e-49 198.0 140 65.7
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.5e-48 196.4 143 62.9
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 1.9e-48 196.1 139 63.3
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 3.3e-48 195.3 145 66.2
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 4.3e-48 194.9 140 63.6
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 5.6e-48 194.5 135 65.9
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 5.6e-48 194.5 142 66.2
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 5.6e-48 194.5 139 64.0
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 5.6e-48 194.5 139 64.0
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 7.3e-48 194.1 130 65.4
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.2e-47 193.4 136 61.8
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 1.6e-47 193.0 136 61.8
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 1.6e-47 193.0 131 67.2
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 2.1e-47 192.6 136 62.5
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 2.1e-47 192.6 141 61.7
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 2.1e-47 192.6 136 61.8
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 2.1e-47 192.6 138 65.2
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.8e-47 192.2 137 64.2
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 2.8e-47 192.2 137 62.8
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 4.7e-47 191.4 138 61.6
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 6.2e-47 191.0 133 64.7
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 6.2e-47 191.0 136 61.0
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 8.1e-47 190.7 138 63.0
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 8.1e-47 190.7 136 64.7
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 1.8e-46 189.5 139 61.2
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 1.8e-46 189.5 139 61.2
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 4.0e-46 188.3 137 62.0
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 4.0e-46 188.3 137 62.0
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 5.2e-46 188.0 140 62.9
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 5.2e-46 188.0 178 54.5
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 6.9e-46 187.6 142 62.0
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 6.9e-46 187.6 135 65.2
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 9.0e-46 187.2 134 63.4
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.2e-45 186.8 138 58.0
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 1.2e-45 186.8 137 61.3
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 1.2e-45 186.8 136 61.0
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 1.2e-45 186.8 141 60.3
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.0e-45 186.0 135 62.2
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 2.0e-45 186.0 139 63.3
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.6e-45 185.7 135 63.7
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 3.4e-45 185.3 137 61.3
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.4e-45 185.3 143 66.4
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 4.4e-45 184.9 136 60.3
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 4.4e-45 184.9 135 63.0
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 5.8e-45 184.5 135 63.7
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 9.9e-45 183.7 137 60.6
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 9.9e-45 183.7 123 67.5
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 1.7e-44 183.0 122 70.5
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 1.7e-44 183.0 143 65.7
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 2.9e-44 182.2 138 58.0
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 4.9e-44 181.4 139 61.9
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 1.1e-43 180.3 140 58.6
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 1.1e-43 180.3 140 58.6
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 1.9e-43 179.5 136 58.8
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 2.4e-43 179.1 136 60.3
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 3.2e-43 178.7 137 56.9
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 3.2e-43 178.7 137 61.3
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 3.2e-43 178.7 134 62.7
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 5.4e-43 177.9 136 59.6
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 7.1e-43 177.6 142 57.7
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 1.2e-42 176.8 137 56.2
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 1.2e-42 176.8 137 56.2
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 2.1e-42 176.0 137 58.4
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 3.5e-42 175.3 142 58.5
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 3.5e-42 175.3 139 61.2
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 4.6e-42 174.9 138 61.6
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 1.0e-41 173.7 138 55.8
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 1.0e-41 173.7 140 60.0
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 1.3e-41 173.3 129 61.2
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.3e-41 173.3 134 59.7
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.7e-41 172.9 137 57.7
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 2.3e-41 172.6 136 58.1
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 8.7e-41 170.6 141 56.7
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 6.2e-39 164.5 137 56.2
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 3.1e-38 162.2 131 53.4
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 6.9e-38 161.0 136 58.1
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 9.0e-38 160.6 137 54.7
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 1.2e-37 160.2 132 54.5
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 1.2e-37 160.2 142 54.2
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 4.5e-37 158.3 134 51.5
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 7.6e-37 157.5 135 54.8
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 9.9e-37 157.1 137 54.7
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 1.3e-36 156.8 138 55.8
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 2.4e-35 152.5 138 55.8
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 3.2e-35 152.1 115 67.0
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 5.4e-35 151.4 134 55.2
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 1.2e-34 150.2 98 67.3
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 9.6e-32 140.6 112 59.8
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 1.3e-31 140.2 132 47.7
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.8e-31 139.0 147 46.3
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.0e-30 135.2 87 83.9
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 3.4e-29 132.1 140 46.4
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 4.2e-27 125.2 134 47.0
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 7.9e-26 120.9 124 50.8
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 6.9e-22 107.8 102 55.9
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 2.2e-20 102.8 129 44.2
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 4.9e-20 101.7 72 70.8
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 6.5e-20 101.3 103 52.4
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 3.2e-19 99.0 51 78.4
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 9.3e-19 97.4 74 62.2
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 7.9e-18 94.4 126 40.5
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.3e-17 93.6 71 53.5
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 6.7e-17 91.3 116 41.4
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 3.3e-16 89.0 55 76.4
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 7.4e-16 87.8 46 95.7
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 4.8e-15 85.1 50 66.0
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 4.1e-14 82.0 66 60.6
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 9.4e-11 70.9 63 57.1
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 1.3e-07 60.5 35 62.9


User provided reference genes

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