Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 1.1e-174 616.7 350 100.0
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 7.5e-107 391.3 237 93.7
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 6.6e-103 378.3 219 90.9
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 6.6e-95 351.7 205 96.6
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 2.2e-90 336.7 197 96.4
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 1.6e-80 303.9 197 87.3
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 5.9e-51 205.7 163 65.6
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 4.5e-43 179.5 167 56.9
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 2.9e-42 176.8 154 59.7
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 1.2e-40 171.4 155 55.5
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 7.4e-38 162.2 159 52.2
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 1.3e-37 161.4 184 50.0
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 2.2e-37 160.6 159 51.6
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 3.7e-37 159.8 179 47.5
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 1.1e-36 158.3 179 50.3
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 1.8e-36 157.5 140 57.1
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 2.4e-36 157.1 140 57.1
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 4.1e-36 156.4 156 51.3
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 1.3e-34 151.4 166 53.6
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 3.8e-34 149.8 141 56.0
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 6.5e-34 149.1 145 53.1
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 1.9e-33 147.5 127 56.7
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 2.5e-33 147.1 127 57.5
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 3.2e-33 146.7 140 55.0
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 7.2e-33 145.6 160 51.2
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 1.2e-32 144.8 135 54.1
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 1.6e-32 144.4 157 47.8
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 2.7e-32 143.7 153 52.9
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 4.7e-32 142.9 121 57.0
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 8.0e-32 142.1 133 57.1
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 1.4e-31 141.4 172 47.1
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 1.4e-31 141.4 185 45.4
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 1.8e-31 141.0 133 57.1
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 1.8e-31 141.0 136 54.4
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 1.8e-31 141.0 146 49.3
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 2.3e-31 140.6 139 54.7
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 3.0e-31 140.2 155 48.4
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 4.0e-31 139.8 130 54.6
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 4.0e-31 139.8 126 57.9
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 5.2e-31 139.4 157 46.5
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 1.2e-30 138.3 157 45.9
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 1.5e-30 137.9 140 52.9
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 1.5e-30 137.9 126 56.3
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 2.0e-30 137.5 142 49.3
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 2.6e-30 137.1 134 53.0
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 4.4e-30 136.3 134 55.2
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 7.5e-30 135.6 154 50.0
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 9.7e-30 135.2 126 55.6
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 1.3e-29 134.8 149 50.3
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 2.2e-29 134.0 145 48.3
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 2.8e-29 133.7 152 48.7
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 4.8e-29 132.9 142 50.0
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 6.3e-29 132.5 142 50.0
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 8.3e-29 132.1 152 48.0
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 1.4e-28 131.3 136 54.4
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 2.4e-28 130.6 171 45.6
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 4.1e-28 129.8 161 44.7
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 5.3e-28 129.4 160 48.1
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 1.2e-27 128.3 149 53.0
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 1.2e-27 128.3 149 53.0
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 1.2e-27 128.3 148 47.3
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 1.2e-27 128.3 157 47.1
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 1.2e-27 128.3 132 53.8
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 2.7e-27 127.1 185 45.9
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 2.7e-27 127.1 123 51.2
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 3.5e-27 126.7 120 54.2
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 3.5e-27 126.7 151 49.7
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 3.5e-27 126.7 123 53.7
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 4.5e-27 126.3 120 54.2
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 5.9e-27 125.9 154 46.1
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 1.0e-26 125.2 124 52.4
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 1.7e-26 124.4 116 54.3
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 1.7e-26 124.4 149 52.3
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 2.2e-26 124.0 145 47.6
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 1.1e-25 121.7 150 46.7
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 1.1e-25 121.7 138 47.1
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 1.1e-25 121.7 129 51.2
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 1.5e-25 121.3 110 56.4
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 1.5e-25 121.3 120 49.2
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 1.9e-25 120.9 117 53.0
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 2.5e-25 120.6 127 48.0
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 1.6e-24 117.9 152 47.4
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 1.6e-24 117.9 117 52.1
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 2.1e-24 117.5 136 47.1
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 4.7e-24 116.3 120 50.0
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 6.1e-24 115.9 145 46.2
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 8.0e-24 115.5 115 50.4
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.4e-23 114.8 117 48.7
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 3.0e-23 113.6 126 47.6
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 4.0e-23 113.2 118 48.3
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 5.2e-23 112.8 153 43.1
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 1.5e-22 111.3 104 54.8
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 2.6e-22 110.5 180 38.9
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 1.3e-21 108.2 109 53.2
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 1.3e-21 108.2 109 53.2
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 1.4e-20 104.8 99 51.5
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 3.1e-20 103.6 99 51.5
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 4.1e-20 103.2 140 43.6
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 2.7e-19 100.5 122 50.0
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 4.5e-19 99.8 105 50.5
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 3.8e-18 96.7 128 41.4
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 1.9e-17 94.4 67 67.2
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 3.3e-17 93.6 144 38.2
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 2.3e-15 87.4 154 40.3
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 5.2e-15 86.3 79 51.9
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 7.5e-14 82.4 85 50.6
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 1.7e-13 81.3 135 39.3
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 2.3e-10 70.9 90 41.1
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 3.3e-09 67.0 96 39.6
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 9.5e-09 65.5 53 54.7
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 4.7e-08 63.2 151 30.5
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 6.1e-08 62.8 79 41.8
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 1.2e-06 58.5 50 54.0
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 3.4e-06 57.0 115 33.0
Pp3c17_18030 Physcomitrium patens HOM05D016889 ORTHO05D026570 9.8e-06 55.5 75 41.3


User provided reference genes

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