Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0159 Fragaria x ananassa HOM05D000623 ORTHO05D006801 5.6e-83 310.8 151 100.0
FvH4_7g34020 Fragaria vesca HOM05D000623 ORTHO05D006801 7.6e-48 194.1 117 83.8
RcHm_v2.0_Chr1g0384281 Rosa chinensis HOM05D000623 ORTHO05D006801 1.0e-47 193.7 117 83.8
FAN03G1666 Fragaria x ananassa HOM05D000623 ORTHO05D006801 2.1e-45 186.0 117 81.2
Prupe.2G326700 Prunus persica HOM05D000623 ORTHO05D006801 4.8e-42 174.9 115 75.7
MD07G1309300 Malus domestica HOM05D000623 ORTHO05D006801 1.4e-41 173.3 115 73.9
vmacro06513 Vaccinium macrocarpon HOM05D000623 ORTHO05D006801 5.9e-40 167.9 113 73.5
MD01G1236700 Malus domestica HOM05D000623 ORTHO05D006801 2.2e-39 166.0 135 64.4
HanXRQChr03g0088471 Helianthus annuus HOM05D000623 ORTHO05D006801 5.0e-39 164.9 110 73.6
Actinidia34310 Actinidia chinensis HOM05D000623 ORTHO05D006801 1.1e-38 163.7 110 72.7
Haze_00420 Corylus avellana HOM05D000623 ORTHO05D006801 1.4e-38 163.3 113 69.9
QL09p023747 Quercus lobata HOM05D000623 ORTHO05D006801 3.2e-38 162.2 115 69.6
SGA_v2.0_scaffold18G08512 Striga asiatica HOM05D000623 ORTHO05D006801 3.2e-38 162.2 112 71.4
Gorai.004G257200 Gossypium raimondii HOM05D000623 ORTHO05D006801 5.5e-38 161.4 114 68.4
SalBow4G1923 Salvia bowleyana HOM05D000623 ORTHO05D006801 7.2e-38 161.0 111 70.3
Cfa016037 Carpinus fangiana HOM05D000623 ORTHO05D006801 1.2e-37 160.2 110 70.0
Gohir.A08G221672 Gossypium hirsutum HOM05D000623 ORTHO05D006801 1.2e-37 160.2 114 68.4
Rhsim03G0221800 Rhododendron simsii HOM05D000623 ORTHO05D006801 1.6e-37 159.8 113 70.8
Eucgr.K00083 Eucalyptus grandis HOM05D000623 ORTHO05D006801 2.1e-37 159.5 110 70.9
SalBow4G0865 Salvia bowleyana HOM05D000623 ORTHO05D006801 2.1e-37 159.5 107 69.2
CSS0015652 Camellia sinensis var. sinensis HOM05D000623 ORTHO05D006801 3.6e-37 158.7 115 68.7
Thecc.05G214300 Theobroma cacao HOM05D000623 ORTHO05D006801 3.6e-37 158.7 113 69.0
Ciclev10019794m.g Citrus clementina HOM05D000623 ORTHO05D006801 4.6e-37 158.3 111 71.2
Lsat_1_v5_gn_9_47601 Lactuca sativa HOM05D000623 ORTHO05D006801 4.6e-37 158.3 110 70.0
CANSAT21G1001 Cannabis sativa HOM05D000623 ORTHO05D006801 6.1e-37 157.9 110 70.0
Hma1.2p1_1680F.1_g297150 Hydrangea macrophylla HOM05D000623 ORTHO05D006801 7.9e-37 157.5 114 69.3
Sopen03g027800 Solanum pennellii HOM05D000623 ORTHO05D006801 7.9e-37 157.5 115 66.1
Sed0018270 Sechium edule HOM05D000623 ORTHO05D006801 1.0e-36 157.1 111 66.7
Solyc03g097060.4 Solanum lycopersicum HOM05D000623 ORTHO05D006801 1.0e-36 157.1 115 66.1
CiPaw.05G219300 Carya illinoinensis HOM05D000623 ORTHO05D006801 1.3e-36 156.8 117 65.0
Duzib177G1063 Durio zibethinus HOM05D000623 ORTHO05D006801 1.3e-36 156.8 115 67.8
ECA232G1729 Erigeron canadensis HOM05D002083 ORTHO05D006801 1.3e-36 156.8 112 69.6
Manes.09G126700 Manihot esculenta HOM05D000623 ORTHO05D006801 1.3e-36 156.8 114 68.4
Sed0007302 Sechium edule HOM05D000623 ORTHO05D006801 1.3e-36 156.8 111 66.7
PGSC0003DMG402003156 Solanum tuberosum HOM05D000623 ORTHO05D006801 1.3e-36 156.8 115 66.1
A10p22340 Brassica napus HOM05D000623 ORTHO05D006801 3.0e-36 155.6 119 64.7
BraA10t44293Z Brassica rapa HOM05D000623 ORTHO05D006801 3.0e-36 155.6 119 64.7
Migut.F00093 Erythranthe guttata HOM05D000623 ORTHO05D006801 3.0e-36 155.6 110 68.2
AL6G27900 Arabidopsis lyrata HOM05D000623 ORTHO05D006801 5.1e-36 154.8 115 64.3
Gohir.D03G051000 Gossypium hirsutum HOM05D000623 ORTHO05D006801 5.1e-36 154.8 115 66.1
MBI19_g25012_MAGBIO Magnolia biondii HOM05D000623 ORTHO05D006801 5.1e-36 154.8 112 65.2
GSVIVG01014123001 Vitis vinifera HOM05D000623 ORTHO05D006801 5.1e-36 154.8 110 68.2
A02p03830 Brassica napus HOM05D000623 ORTHO05D006801 6.7e-36 154.5 116 64.7
CiPaw.06G033100 Carya illinoinensis HOM05D000623 ORTHO05D006801 8.7e-36 154.1 113 68.1
Nitab4.5_0001762g0090 Nicotiana tabacum HOM05D000623 ORTHO05D006801 8.7e-36 154.1 115 64.3
CAN.G1131.16 Capsicum annuum HOM05D000623 ORTHO05D006801 1.1e-35 153.7 115 64.3
C03p09330 Brassica napus HOM05D000623 ORTHO05D006801 1.5e-35 153.3 110 67.3
BolC3t13428H Brassica oleracea HOM05D000623 ORTHO05D006801 1.5e-35 153.3 110 67.3
Peaxi162Scf00516g00649 Petunia axillaris HOM05D000623 ORTHO05D006801 1.5e-35 153.3 115 64.3
Phvul.011G019900 Phaseolus vulgaris HOM05D000623 ORTHO05D006801 1.5e-35 153.3 120 61.7
Potri.019G049800 Populus trichocarpa HOM05D000623 ORTHO05D006801 1.5e-35 153.3 110 70.0
CARHR196270 Cardamine hirsuta HOM05D000623 ORTHO05D006801 1.9e-35 152.9 98 71.4
C09p60190 Brassica napus HOM05D000623 ORTHO05D006801 2.5e-35 152.5 119 63.9
BolC9t58852H Brassica oleracea HOM05D000623 ORTHO05D006801 2.5e-35 152.5 119 63.9
Nitab4.5_0000021g0630 Nicotiana tabacum HOM05D000623 ORTHO05D006801 2.5e-35 152.5 111 65.8
TAR375G0749 Trochodendron aralioides HOM05D000623 ORTHO05D006801 2.5e-35 152.5 110 64.5
VMungo1127G0704 Vigna mungo HOM05D000623 ORTHO05D006801 2.5e-35 152.5 120 60.8
A03p08070 Brassica napus HOM05D000623 ORTHO05D006801 4.3e-35 151.8 110 66.4
BraA02t05349Z Brassica rapa HOM05D000623 ORTHO05D006801 4.3e-35 151.8 116 62.9
Gorai.003G052700 Gossypium raimondii HOM05D000623 ORTHO05D006801 4.3e-35 151.8 114 64.9
BcaB01g04966 Brassica carinata HOM05D000623 ORTHO05D006801 7.4e-35 151.0 115 62.6
Nn7g37138 Nelumbo nucifera HOM05D000623 ORTHO05D006801 7.4e-35 151.0 116 64.7
Oeu063726.1 Olea europaea HOM05D000623 ORTHO05D006801 7.4e-35 151.0 110 66.4
Sabra17G0072200 Salix brachista HOM05D000623 ORTHO05D006801 7.4e-35 151.0 110 67.3
Sp6g27210 Schrenkiella parvula HOM05D000623 ORTHO05D006801 1.3e-34 150.2 110 66.4
BcaC03g18521 Brassica carinata HOM05D000623 ORTHO05D006801 1.6e-34 149.8 106 66.0
BraA03t10132Z Brassica rapa HOM05D000623 ORTHO05D006801 1.6e-34 149.8 110 64.5
Carub.0006s1511 Capsella rubella HOM05D000623 ORTHO05D006801 1.6e-34 149.8 93 73.1
MSTRG.26928 Avicennia marina HOM05D000623 ORTHO05D006801 2.8e-34 149.1 113 63.7
Cc02_g00260 Coffea canephora HOM05D000623 ORTHO05D006801 2.8e-34 149.1 110 63.6
Lalb_Chr09g0320171 Lupinus albus HOM05D000623 ORTHO05D006801 2.8e-34 149.1 111 64.9
unitig_60.g25782 Utricularia gibba HOM05D000623 ORTHO05D006801 3.7e-34 148.7 114 63.2
AT5G16890 Arabidopsis thaliana HOM05D000623 ORTHO05D006801 4.8e-34 148.3 115 62.6
BcaNung04949 Brassica carinata HOM05D000623 ORTHO05D006801 4.8e-34 148.3 110 63.6
CsaV3_2G007550 Cucumis sativus L. HOM05D000623 ORTHO05D006801 6.3e-34 147.9 110 65.5
Glyma.12G017500 Glycine max HOM05D000623 ORTHO05D006801 6.3e-34 147.9 120 60.8
SGA_v2.0_scaffold44G16894 Striga asiatica HOM05D000623 ORTHO05D006801 6.3e-34 147.9 112 65.2
TWI34G1816 Tripterygium wilfordii HOM05D000623 ORTHO05D006801 6.3e-34 147.9 112 64.3
Glyma.11G107900 Glycine max HOM05D000623 ORTHO05D006801 8.2e-34 147.5 120 60.8
Psat7g170560 Pisum sativum HOM05D000623 ORTHO05D006801 8.2e-34 147.5 113 61.9
THA.LOC104827211 Tarenaya hassleriana HOM05D000623 ORTHO05D006801 8.2e-34 147.5 110 62.7
THA.LOC104802924 Tarenaya hassleriana HOM05D000623 ORTHO05D006801 1.1e-33 147.1 101 66.3
Ca_04914_v3 Cicer arietinum L. HOM05D000623 ORTHO05D006801 1.4e-33 146.7 117 61.5
Cc00_g28230 Coffea canephora HOM05D000623 ORTHO05D006801 1.4e-33 146.7 93 69.9
Thhalv10013266m.g Eutrema salsugineum HOM05D000623 ORTHO05D006801 1.4e-33 146.7 115 60.9
TPR.G27321 Trifolium pratense HOM05D000623 ORTHO05D006801 1.4e-33 146.7 110 65.5
MELO3C004131.2 Cucumis melo HOM05D000623 ORTHO05D006801 1.8e-33 146.4 110 63.6
Aqoxy7G00639 Aquilegia oxysepala HOM05D000623 ORTHO05D006801 2.4e-33 146.0 94 72.3
arahy.Tifrunner.gnm1.ann1.RS8UUT Arachis hypogaea HOM05D000623 ORTHO05D006801 6.9e-33 144.4 110 63.6
Hund09794 Selenicereus undatus HOM05D000623 ORTHO05D006801 9.1e-33 144.1 114 61.4
arahy.Tifrunner.gnm1.ann1.03WG9V Arachis hypogaea HOM05D000623 ORTHO05D006801 1.2e-32 143.7 111 63.1
Lj3g0009745 Lotus japonicus HOM05D000623 ORTHO05D006801 1.2e-32 143.7 111 60.4
Zm00001eb150150 Zea mays HOM05D000623 ORTHO05D006801 1.5e-32 143.3 116 62.1
Thhalv10020554m.g Eutrema salsugineum HOM05D000623 ORTHO05D006801 2.0e-32 142.9 110 60.9
Medtr4g077920 Medicago truncatula HOM05D000623 ORTHO05D006801 2.6e-32 142.5 110 62.7
Aa31LG11G12690 Aethionema arabicum HOM05D000623 ORTHO05D006801 1.7e-31 139.8 110 61.8
AUR62028180 Chenopodium quinoa HOM05D000623 ORTHO05D006801 2.9e-31 139.0 108 63.0
Actinidia08745 Actinidia chinensis HOM05D000074 ORTHO05D006801 5.0e-31 138.3 93 72.0
arahy.Tifrunner.gnm1.ann1.FVW7UZ Arachis hypogaea HOM05D000623 ORTHO05D006801 6.5e-31 137.9 92 69.6
EL10Ac3g05072 Beta vulgaris HOM05D000623 ORTHO05D006801 1.1e-30 137.1 115 58.3
PSO339G0021 Papaver somniferum HOM05D000623 ORTHO05D006801 1.4e-30 136.7 103 61.2
PSO384G3175 Papaver somniferum HOM05D000623 ORTHO05D006801 9.4e-30 134.0 113 58.4
CDE09G1431 Ceratophyllum demersum HOM05D000623 ORTHO05D006801 2.1e-29 132.9 115 56.5
Ah.13g072730 Amaranthus hybridus HOM05D000623 ORTHO05D006801 4.6e-29 131.7 108 60.2
ATR1096G091 Amborella trichopoda HOM05D000623 ORTHO05D006801 1.0e-28 130.6 111 54.1
BolC2t06780H Brassica oleracea HOM05D000623 ORTHO05D006801 1.4e-28 130.2 97 62.9
arahy.Tifrunner.gnm1.ann1.5W88IT Arachis hypogaea HOM05D000623 ORTHO05D006801 2.3e-28 129.4 98 61.2
C02p08640 Brassica napus HOM05D000106 ORTHO05D006801 2.3e-28 129.4 93 64.5
ClCG02G014450 Citrullus lanatus HOM05D000623 ORTHO05D006801 4.4e-27 125.2 110 58.2
CDE08G0653 Ceratophyllum demersum HOM05D000623 ORTHO05D006801 2.8e-26 122.5 82 67.1
arahy.Tifrunner.gnm1.ann1.EVZ30F Arachis hypogaea HOM05D000623 ORTHO05D006801 8.2e-26 120.9 81 69.1
Pp3c14_19620 Physcomitrium patens HOM05D000623 ORTHO05D006801 1.1e-22 110.5 110 48.2
PGR142G3700 Punica granatum HOM05D000623 ORTHO05D006801 4.2e-22 108.6 80 65.0
SMO164G0109 Selaginella moellendorffii HOM05D000623 ORTHO05D006801 1.4e-20 103.6 93 49.5
Duzib128G0029 Durio zibethinus HOM05D000623 ORTHO05D006801 5.2e-20 101.7 81 60.5
Gohir.D08G241900 Gossypium hirsutum HOM05D000623 ORTHO05D006801 6.7e-20 101.3 114 50.9
arahy.Tifrunner.gnm1.ann1.IGNJ4P Arachis hypogaea HOM05D000623 ORTHO05D006801 1.5e-19 100.1 97 56.7
DCAR_020410 Daucus carota HOM05D000623 ORTHO05D006801 1.5e-19 100.1 80 60.0
Rhsim07G0247900 Rhododendron simsii HOM05D000623 ORTHO05D006801 1.5e-19 100.1 150 43.3
Oeu031700.1 Olea europaea HOM05D002083 ORTHO05D000332 2.6e-19 99.4 75 61.3
COL.COLO4_37804 Corchorus olitorius HOM05D000623 ORTHO05D006801 7.4e-19 97.8 92 51.1
DCAR_009018 Daucus carota HOM05D000623 ORTHO05D006801 1.3e-18 97.1 79 59.5
Cpa.g.sc43.87 Carica papaya HOM05D000623 ORTHO05D006801 4.8e-18 95.1 77 57.1
Atru.BG.252.p Acer truncatum HOM05D000623 ORTHO05D006801 1.8e-17 93.2 75 58.7
AUR62002067 Chenopodium quinoa HOM05D000623 ORTHO05D006801 1.0e-15 87.4 74 55.4
arahy.Tifrunner.gnm1.ann1.EGZ3AH Arachis hypogaea HOM05D000623 ORTHO05D006801 1.3e-15 87.0 84 53.6
arahy.Tifrunner.gnm1.ann1.BIG5T2 Arachis hypogaea HOM05D000623 ORTHO05D006801 1.0e-12 77.4 94 45.7
arahy.Tifrunner.gnm1.ann1.K7NSYA Arachis hypogaea HOM05D000623 ORTHO05D082845 7.5e-11 71.2 88 44.3
Nitab4.5_0000121g0200 Nicotiana tabacum HOM05D000623 ORTHO05D002156 1.6e-08 63.5 95 36.8
Nitab4.5_0000889g0050 Nicotiana tabacum HOM05D000623 ORTHO05D002156 2.0e-08 63.2 95 36.8
PGSC0003DMG400019532 Solanum tuberosum HOM05D000623 ORTHO05D002156 2.0e-08 63.2 102 35.3
FvH4_3g40011 Fragaria vesca HOM05D037060 ORTHO05D198074 3.5e-08 62.4 55 54.5
SEGI_02667 Sequoiadendron giganteum HOM05D000623 ORTHO05D005779 7.7e-08 61.2 104 35.6
TWI63G1389 Tripterygium wilfordii HOM05D000623 ORTHO05D005779 2.2e-07 59.7 110 31.8
CAN.G837.18 Capsicum annuum HOM05D000623 ORTHO05D002156 5.0e-07 58.5 95 34.7
FvH4_6g35341 Fragaria vesca HOM05D037060 ORTHO05D046120 5.0e-07 58.5 54 55.6
CDE02G2816 Ceratophyllum demersum HOM05D000623 ORTHO05D002156 6.5e-07 58.2 95 32.6
FAN04G0034 Fragaria x ananassa HOM05D002436 ORTHO05D002754 1.5e-06 57.0 35 80.0
Potri.002G210000 Populus trichocarpa HOM05D000623 ORTHO05D002156 1.5e-06 57.0 98 32.7
FAN08G1669 Fragaria x ananassa HOM05D002436 ORTHO05D002754 4.2e-06 55.5 37 75.7
TWI38G1806 Tripterygium wilfordii HOM05D000623 ORTHO05D005779 5.5e-06 55.1 110 31.8
arahy.Tifrunner.gnm1.ann1.13ZWE0 Arachis hypogaea HOM05D000623 ORTHO05D005779 7.2e-06 54.7 93 35.5
arahy.Tifrunner.gnm1.ann1.UCHX4J Arachis hypogaea HOM05D000623 ORTHO05D005779 7.2e-06 54.7 93 35.5
FAN13G1750 Fragaria x ananassa HOM05D002436 ORTHO05D002754 7.2e-06 54.7 43 69.8
Lj3A887G70 Lonicera japonica HOM05D000623 ORTHO05D006801 7.2e-06 54.7 64 46.9
TWI81G0198 Tripterygium wilfordii HOM05D000623 ORTHO05D002156 9.4e-06 54.3 95 32.6


User provided reference genes

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