Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0121 Fragaria x ananassa HOM05D007113 ORTHO05D008859 1.7e-55 219.2 118 100.0
FAN14G1367 Fragaria x ananassa HOM05D007113 ORTHO05D008859 2.3e-55 218.8 118 99.2
FAN05G2893 Fragaria x ananassa HOM05D007113 ORTHO05D008859 1.1e-54 216.5 118 99.2
FvH4_6g11730 Fragaria vesca HOM05D007113 ORTHO05D008859 9.5e-54 213.4 118 97.5
RcHm_v2.0_Chr3g0463511 Rosa chinensis HOM05D007113 ORTHO05D008859 1.3e-50 203.0 118 92.4
MD12G1164000 Malus domestica HOM05D007113 ORTHO05D008859 3.5e-48 194.9 118 87.3
MD04G1149600 Malus domestica HOM05D007113 ORTHO05D008859 4.6e-48 194.5 118 88.1
FAN02G3283 Fragaria x ananassa HOM05D008730 ORTHO05D008859 5.2e-44 181.0 109 89.9
FAN14G0869 Fragaria x ananassa HOM05D008730 ORTHO05D010922 1.3e-42 176.4 109 87.2
CANSAT35G0395 Cannabis sativa HOM05D007113 ORTHO05D008859 1.6e-40 169.5 120 76.7
GSVIVG01033979001 Vitis vinifera HOM05D007113 ORTHO05D008859 2.5e-38 162.2 116 73.3
Nn8g40109 Nelumbo nucifera HOM05D007113 ORTHO05D008859 1.6e-37 159.5 116 69.8
Gorai.002G262200 Gossypium raimondii HOM05D007113 ORTHO05D008859 1.1e-36 156.8 118 71.2
Dinv34405 Davidia involucrata HOM05D007113 ORTHO05D008859 2.3e-36 155.6 116 69.0
Gohir.A01G226400 Gossypium hirsutum HOM05D007113 ORTHO05D008859 2.3e-36 155.6 118 70.3
Hma1.2p1_0362F.1_g136060 Hydrangea macrophylla HOM05D007113 ORTHO05D008859 5.2e-36 154.5 115 72.2
Gohir.D01G216000 Gossypium hirsutum HOM05D007113 ORTHO05D008859 8.9e-36 153.7 118 70.3
Haze_20976 Corylus avellana HOM05D007113 ORTHO05D008859 2.0e-35 152.5 116 71.6
PGR004G1045 Punica granatum HOM05D007113 ORTHO05D008859 6.4e-34 147.5 117 71.8
Potri.016G113700 Populus trichocarpa HOM05D007113 ORTHO05D008859 2.4e-33 145.6 118 69.5
Thecc.05G019300 Theobroma cacao HOM05D007113 ORTHO05D008859 7.1e-33 144.1 118 64.4
COL.COLO4_14561 Corchorus olitorius HOM05D007113 ORTHO05D008859 1.2e-32 143.3 120 65.0
Duzib093G1147 Durio zibethinus HOM05D007113 ORTHO05D008859 1.2e-32 143.3 118 63.6
MELO3C003245.2 Cucumis melo HOM05D007113 ORTHO05D008859 2.1e-32 142.5 119 68.1
Eucgr.K02991 Eucalyptus grandis HOM05D007113 ORTHO05D008859 4.6e-32 141.4 121 64.5
CSS0048161 Camellia sinensis var. sinensis HOM05D007113 ORTHO05D008859 6.0e-32 141.0 120 66.7
CDE03G0108 Ceratophyllum demersum HOM05D007113 ORTHO05D008859 6.0e-32 141.0 116 62.9
DCAR_028817 Daucus carota HOM05D007113 ORTHO05D008859 6.0e-32 141.0 117 67.5
Atru.chr8.2216 Acer truncatum HOM05D007113 ORTHO05D008859 1.7e-31 139.4 116 66.4
TWI74G0516 Tripterygium wilfordii HOM05D007113 ORTHO05D008859 1.7e-31 139.4 118 65.3
CDE04G2391 Ceratophyllum demersum HOM05D007113 ORTHO05D008859 3.0e-31 138.7 116 61.2
AT2G38140 Arabidopsis thaliana HOM05D007113 ORTHO05D008859 3.9e-31 138.3 116 64.7
CARHR132730 Cardamine hirsuta HOM05D007113 ORTHO05D008859 3.9e-31 138.3 116 62.1
C04p09540 Brassica napus HOM05D007113 ORTHO05D008859 5.1e-31 137.9 117 64.1
BolC4t22560H Brassica oleracea HOM05D007113 ORTHO05D008859 5.1e-31 137.9 117 64.1
Cfa017230 Carpinus fangiana HOM05D007113 ORTHO05D008859 5.1e-31 137.9 115 63.5
THA.LOC104805827 Tarenaya hassleriana HOM05D007113 ORTHO05D008859 5.1e-31 137.9 119 62.2
A05p07890 Brassica napus HOM05D007113 ORTHO05D008859 6.6e-31 137.5 120 64.2
Oeu028599.1 Olea europaea HOM05D007113 ORTHO05D008859 8.6e-31 137.1 120 62.5
Aa31sc189G20 Aethionema arabicum HOM05D007113 ORTHO05D008859 1.9e-30 136.0 119 62.2
ClCG04G007070 Citrullus lanatus HOM05D007113 ORTHO05D008859 2.5e-30 135.6 119 64.7
CsaV3_4G026180 Cucumis sativus L. HOM05D007113 ORTHO05D008859 4.3e-30 134.8 118 65.3
Migut.F01372 Erythranthe guttata HOM05D007113 ORTHO05D008859 7.3e-30 134.0 119 61.3
BraA05t19755Z Brassica rapa HOM05D007113 ORTHO05D008859 1.2e-29 133.3 120 62.5
TWI77G0060 Tripterygium wilfordii HOM05D007113 ORTHO05D008859 1.6e-29 132.9 116 63.8
TAR623G1648 Trochodendron aralioides HOM05D007113 ORTHO05D008859 6.2e-29 131.0 102 69.6
Lj3g0022517 Lotus japonicus HOM05D007113 ORTHO05D008859 8.1e-29 130.6 120 62.5
PSO339G1456 Papaver somniferum HOM05D007113 ORTHO05D008859 2.4e-28 129.0 119 61.3
PSO384G2929 Papaver somniferum HOM05D007113 ORTHO05D008859 2.4e-28 129.0 119 63.0
Ciclev10013049m.g Citrus clementina HOM05D007113 ORTHO05D008859 4.0e-28 128.3 116 60.3
Lsat_1_v5_gn_9_63261 Lactuca sativa HOM05D007113 ORTHO05D008859 5.2e-28 127.9 115 63.5
CiPaw.10G155700 Carya illinoinensis HOM05D007113 ORTHO05D008859 1.5e-27 126.3 116 61.2
Manes.08G090600 Manihot esculenta HOM05D007113 ORTHO05D008859 2.0e-27 125.9 119 61.3
ECA238G3418 Erigeron canadensis HOM05D007113 ORTHO05D008859 2.6e-27 125.6 118 59.3
Sed0004762 Sechium edule HOM05D007113 ORTHO05D008859 5.8e-27 124.4 116 62.9
unitig_62.g23930 Utricularia gibba HOM05D000230 ORTHO05D000176 9.9e-27 123.6 117 58.1
Sopen05g031230 Solanum pennellii HOM05D007113 ORTHO05D008859 1.3e-26 123.2 120 57.5
HanXRQChr14g0460151 Helianthus annuus HOM05D007113 ORTHO05D008859 2.9e-26 122.1 118 58.5
Lsat_1_v5_gn_2_121221 Lactuca sativa HOM05D007113 ORTHO05D008859 2.9e-26 122.1 117 59.8
Glyma.03G063200 Glycine max HOM05D007113 ORTHO05D008859 3.8e-26 121.7 118 61.9
Solyc05g052710.3 Solanum lycopersicum HOM05D007113 ORTHO05D008859 3.8e-26 121.7 120 57.5
ATR0618G049 Amborella trichopoda HOM05D007113 ORTHO05D008859 6.4e-26 120.9 116 56.9
Phvul.004G171400 Phaseolus vulgaris HOM05D007113 ORTHO05D008859 8.4e-26 120.6 118 60.2
Phvul.010G003200 Phaseolus vulgaris HOM05D007113 ORTHO05D008859 8.4e-26 120.6 118 59.3
PGSC0003DMG400027129 Solanum tuberosum HOM05D007113 ORTHO05D008859 1.1e-25 120.2 120 56.7
HPP92_019871 Vanilla planifolia HOM05D007113 ORTHO05D008859 1.1e-25 120.2 114 59.6
SalBow6G1146 Salvia bowleyana HOM05D007113 ORTHO05D008859 1.4e-25 119.8 118 59.3
VMungo1127G1807 Vigna mungo HOM05D007113 ORTHO05D008859 2.4e-25 119.0 119 59.7
vmacro06980 Vaccinium macrocarpon HOM05D007113 ORTHO05D008859 4.2e-25 118.2 116 58.6
Nitab4.5_0008493g0040 Nicotiana tabacum HOM05D007113 ORTHO05D008859 7.1e-25 117.5 115 55.7
Nitab4.5_0000802g0080 Nicotiana tabacum HOM05D007113 ORTHO05D008859 1.2e-24 116.7 115 54.8
arahy.Tifrunner.gnm1.ann1.J29A80 Arachis hypogaea HOM05D007113 ORTHO05D008859 6.0e-24 114.4 123 57.7
CAN.G503.7 Capsicum annuum HOM05D007113 ORTHO05D008859 1.7e-23 112.8 119 52.9
Lalb_Chr07g0193491 Lupinus albus HOM05D007113 ORTHO05D008859 1.7e-23 112.8 73 72.6
Cc02_g06720 Coffea canephora HOM05D007113 ORTHO05D008859 3.0e-23 112.1 121 52.1
Nitab4.5_0004338g0130 Nicotiana tabacum HOM05D007113 ORTHO05D008859 5.1e-23 111.3 116 56.0
Glyma.01G114800 Glycine max HOM05D007113 ORTHO05D008859 6.6e-23 110.9 119 59.7
Haze_17209 Corylus avellana HOM05D007113 ORTHO05D008859 1.5e-22 109.8 106 61.3
Rhsim03G0141800 Rhododendron simsii HOM05D007113 ORTHO05D008859 1.9e-22 109.4 137 48.2
Prupe.6G274500 Prunus persica HOM05D007113 ORTHO05D008859 2.5e-22 109.0 83 71.1
Sc11g0007190 Simmondsia chinensis HOM05D007113 ORTHO05D008859 7.3e-22 107.5 114 57.0
Medtr4g015540 Medicago truncatula HOM05D007113 ORTHO05D008859 9.6e-22 107.1 118 54.2
Aqoxy4G02617 Aquilegia oxysepala HOM05D007113 ORTHO05D008859 1.3e-21 106.7 116 53.4
Peaxi162Scf00957g00229 Petunia axillaris HOM05D011221 ORTHO05D013370 2.1e-21 105.9 107 56.1
arahy.Tifrunner.gnm1.ann1.62SCQ6 Arachis hypogaea HOM05D007113 ORTHO05D008859 3.6e-21 105.1 63 79.4
Carub.0004s2011 Capsella rubella HOM05D007113 ORTHO05D008859 3.6e-21 105.1 116 52.6
Actinidia29691 Actinidia chinensis HOM05D007113 ORTHO05D008859 8.1e-21 104.0 117 51.3
AL4G35140 Arabidopsis lyrata HOM05D007113 ORTHO05D008859 8.1e-21 104.0 116 52.6
Hund23901 Selenicereus undatus HOM05D007113 ORTHO05D008859 8.1e-21 104.0 105 58.1
Sp4g20460 Schrenkiella parvula HOM05D007113 ORTHO05D008859 1.8e-20 102.8 120 51.7
Oeu025646.1 Olea europaea HOM05D007113 ORTHO05D008859 3.1e-20 102.1 94 60.6
Psat7g246120 Pisum sativum HOM05D007113 ORTHO05D008859 4.0e-20 101.7 114 50.9
EL10Ac2g04810 Beta vulgaris HOM05D007113 ORTHO05D008859 9.0e-20 100.5 109 58.7
QL08p062975 Quercus lobata HOM05D007113 ORTHO05D008859 1.2e-19 100.1 108 54.6
SGA_v2.0_scaffold20G09268 Striga asiatica HOM05D007113 ORTHO05D008859 1.5e-19 99.8 74 66.2
TPR.G13351 Trifolium pratense HOM05D007113 ORTHO05D008859 2.6e-19 99.0 70 65.7
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 3.4e-19 98.6 110 54.5
Zm00001eb144250 Zea mays HOM05D007113 ORTHO05D008859 3.4e-19 98.6 114 49.1
Thhalv10017376m.g Eutrema salsugineum HOM05D007113 ORTHO05D008859 9.9e-19 97.1 119 49.6
SGA_v2.0_scaffold78G25464 Striga asiatica HOM05D007113 ORTHO05D008859 1.7e-18 96.3 118 50.8
Ca_20298_v3 Cicer arietinum L. HOM05D007113 ORTHO05D008859 1.1e-17 93.6 120 50.0
TWI53G1153 Tripterygium wilfordii HOM05D007113 ORTHO05D008859 3.2e-17 92.0 62 72.6
Os05g0186000 Oryza sativa ssp. japonica HOM05D007113 ORTHO05D008859 5.4e-17 91.3 104 51.0
SEGI_10938 Sequoiadendron giganteum HOM05D007113 ORTHO05D008859 2.1e-16 89.4 66 63.6
SEGI_38672 Sequoiadendron giganteum HOM05D007113 ORTHO05D008859 2.1e-16 89.4 66 63.6
Sabra16G0109100 Salix brachista HOM05D007113 ORTHO05D008859 2.7e-16 89.0 116 54.3
Ah.16g103370 Amaranthus hybridus HOM05D007113 ORTHO05D008859 1.0e-15 87.0 108 50.9
arahy.Tifrunner.gnm1.ann1.C0BXE8 Arachis hypogaea HOM05D007113 ORTHO05D008859 1.1e-14 83.6 85 50.6
AagrBONN_evm.TU.Sc2ySwM_362.1890 Anthoceros agrestis HOM05D007113 ORTHO05D008859 1.3e-13 80.1 76 55.3
arahy.Tifrunner.gnm1.ann1.CDY6H8 Arachis hypogaea HOM05D007113 ORTHO05D008859 2.8e-13 79.0 85 49.4
Mapoly0005s0194 Marchantia polymorpha HOM05D007113 ORTHO05D008859 9.0e-12 73.9 117 41.0
Pp3c15_12810 Physcomitrium patens HOM05D007113 ORTHO05D008859 9.3e-09 63.9 67 50.7
Pp3c9_12290 Physcomitrium patens HOM05D007113 ORTHO05D008859 3.5e-08 62.0 116 42.2
CiPaw.09G207700 Carya illinoinensis HOM05D007113 ORTHO05D008859 1.3e-07 60.1 121 44.6
VMungo0331G1181 Vigna mungo HOM05D007113 ORTHO05D008859 8.7e-07 57.4 86 43.0


User provided reference genes

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