Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0042 Fragaria x ananassa HOM05D005159 ORTHO05D006237 2.3e-180 635.6 354 100.0
FvH4_6g45790 Fragaria vesca HOM05D005159 ORTHO05D006237 6.8e-180 634.0 354 99.7
FAN05G5180 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.5e-158 563.1 371 87.6
RcHm_v2.0_Chr2g0163971 Rosa chinensis HOM05D005159 ORTHO05D006237 2.0e-131 473.0 359 80.2
FAN02G2008 Fragaria x ananassa HOM05D005159 ORTHO05D006237 9.3e-129 464.2 298 88.9
FAN14G1445 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.7e-127 459.9 569 55.5
MD17G1070200 Malus domestica HOM05D005159 ORTHO05D006237 9.1e-76 288.1 361 56.8
MD09G1079700 Malus domestica HOM05D005159 ORTHO05D006237 1.6e-75 287.3 363 56.7
Prupe.3G244000 Prunus persica HOM05D005159 ORTHO05D006237 2.6e-75 286.6 359 57.4
CANSAT21G0179 Cannabis sativa HOM05D005159 ORTHO05D006237 3.0e-63 246.5 370 48.4
Ciclev10012260m.g Citrus clementina HOM05D005159 ORTHO05D006237 1.9e-57 227.3 158 75.9
Cpa.g.sc70.15 Carica papaya HOM05D005159 ORTHO05D006237 9.8e-54 214.9 157 72.0
Sed0024356 Sechium edule HOM05D005159 ORTHO05D006237 4.9e-53 212.6 162 66.0
CAN.G497.25 Capsicum annuum HOM05D005159 ORTHO05D006237 8.3e-53 211.8 244 51.6
Potri.017G108700 Populus trichocarpa HOM05D005159 ORTHO05D006237 1.1e-52 211.5 159 69.8
Cc08_g12050 Coffea canephora HOM05D005159 ORTHO05D006237 1.4e-52 211.1 165 66.1
Dinv33896 Davidia involucrata HOM05D005159 ORTHO05D006237 3.1e-52 209.9 162 69.8
Manes.01G106500 Manihot esculenta HOM05D005159 ORTHO05D006237 3.1e-52 209.9 261 51.3
Nn1g09575 Nelumbo nucifera HOM05D005159 ORTHO05D006237 3.1e-52 209.9 250 51.2
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 7.0e-52 208.8 159 68.6
Medtr4g051625 Medicago truncatula HOM05D005159 ORTHO05D006237 9.2e-52 208.4 161 65.8
Sed0002827 Sechium edule HOM05D005159 ORTHO05D006237 9.2e-52 208.4 162 67.9
Thecc.04G145900 Theobroma cacao HOM05D005159 ORTHO05D006237 1.2e-51 208.0 159 69.8
arahy.Tifrunner.gnm1.ann1.MEN3PN Arachis hypogaea HOM05D005159 ORTHO05D006237 2.0e-51 207.2 162 67.9
Migut.K00872 Erythranthe guttata HOM05D005159 ORTHO05D006237 2.7e-51 206.8 159 69.2
PGR004G1892 Punica granatum HOM05D005159 ORTHO05D006237 2.7e-51 206.8 345 44.1
PGSC0003DMG400018775 Solanum tuberosum HOM05D005159 ORTHO05D006237 2.7e-51 206.8 159 67.3
QL02p054338 Quercus lobata HOM05D005159 ORTHO05D006237 4.5e-51 206.1 355 46.5
MELO3C020033.2 Cucumis melo HOM05D005159 ORTHO05D006237 1.0e-50 204.9 257 50.2
CiPaw.03G007500 Carya illinoinensis HOM05D005159 ORTHO05D006237 1.7e-50 204.1 292 51.0
Gohir.A13G118100 Gossypium hirsutum HOM05D005159 ORTHO05D006237 1.7e-50 204.1 159 69.2
Potri.004G106900 Populus trichocarpa HOM05D005159 ORTHO05D006237 2.9e-50 203.4 159 67.3
Nitab4.5_0001982g0030 Nicotiana tabacum HOM05D005159 ORTHO05D006237 3.8e-50 203.0 348 42.0
Solyc03g046350.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 3.8e-50 203.0 288 44.4
CsaV3_5G013180 Cucumis sativus L. HOM05D005159 ORTHO05D006237 5.0e-50 202.6 249 50.6
Duzib211G0079 Durio zibethinus HOM05D005159 ORTHO05D006237 5.0e-50 202.6 159 67.9
Gorai.013G136600 Gossypium raimondii HOM05D005159 ORTHO05D006237 1.9e-49 200.7 159 67.9
Hund27686 Selenicereus undatus HOM05D005159 ORTHO05D006237 3.3e-49 199.9 161 67.1
Hund27687 Selenicereus undatus HOM05D005159 ORTHO05D006237 3.3e-49 199.9 161 67.1
Gohir.D13G121900 Gossypium hirsutum HOM05D005159 ORTHO05D006237 4.3e-49 199.5 159 67.3
THA.LOC104805544 Tarenaya hassleriana HOM05D005159 ORTHO05D006237 4.3e-49 199.5 158 68.4
ClCG11G001130 Citrullus lanatus HOM05D005159 ORTHO05D006237 5.6e-49 199.1 310 44.2
Lju237A1T66 Lonicera japonica HOM05D005159 ORTHO05D006237 7.3e-49 198.7 343 44.9
Peaxi162Scf00479g00439 Petunia axillaris HOM05D005159 ORTHO05D006237 7.3e-49 198.7 321 42.7
Solyc02g089600.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 9.5e-49 198.4 374 41.2
Glyma.07G204700 Glycine max HOM05D005159 ORTHO05D006237 1.2e-48 198.0 345 42.9
Oeu062202.1 Olea europaea HOM05D005159 ORTHO05D006237 1.2e-48 198.0 145 73.1
Sabra04G0075100 Salix brachista HOM05D005159 ORTHO05D006237 1.2e-48 198.0 357 41.2
PGSC0003DMG400010100 Solanum tuberosum HOM05D005159 ORTHO05D006237 1.2e-48 198.0 363 42.4
CDE01G0131 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 2.1e-48 197.2 247 50.2
SGA_v2.0_scaffold10G05141 Striga asiatica HOM05D005159 ORTHO05D006237 2.1e-48 197.2 247 49.4
Ca_13657_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 2.8e-48 196.8 155 65.2
DCAR_026285 Daucus carota HOM05D005159 ORTHO05D006237 3.6e-48 196.4 316 45.3
Sopen03g009860 Solanum pennellii HOM05D005159 ORTHO05D006237 3.6e-48 196.4 279 43.7
AUR62016605 Chenopodium quinoa HOM05D005159 ORTHO05D006237 4.7e-48 196.1 226 55.3
Nitab4.5_0006224g0050 Nicotiana tabacum HOM05D005159 ORTHO05D006237 6.1e-48 195.7 249 48.2
Peaxi162Scf01056g00019 Petunia axillaris HOM05D005159 ORTHO05D006237 6.1e-48 195.7 365 44.1
Glyma.13G171200 Glycine max HOM05D005159 ORTHO05D006237 8.0e-48 195.3 134 75.4
Phvul.008G006700 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 8.0e-48 195.3 335 42.7
TPR.G37714 Trifolium pratense HOM05D005159 ORTHO05D006237 1.0e-47 194.9 161 64.0
Ca_26327_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 1.4e-47 194.5 162 61.1
unitig_61.g26382 Utricularia gibba HOM05D005159 ORTHO05D006237 3.1e-47 193.4 144 70.8
arahy.Tifrunner.gnm1.ann1.VE7QKQ Arachis hypogaea HOM05D005159 ORTHO05D006237 5.2e-47 192.6 158 65.2
GSVIVG01036491001 Vitis vinifera HOM05D005159 ORTHO05D006237 6.8e-47 192.2 331 44.1
Medtr8g085800 Medicago truncatula HOM05D005159 ORTHO05D006237 1.5e-46 191.0 135 72.6
Psat6g166480 Pisum sativum HOM05D005159 ORTHO05D006237 1.5e-46 191.0 159 64.2
MBI15_g38433_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 9.8e-46 188.3 203 53.7
TWI32G0838 Tripterygium wilfordii HOM05D005159 ORTHO05D006237 9.8e-46 188.3 362 43.4
Ah.15g094970 Amaranthus hybridus HOM05D005159 ORTHO05D006237 1.3e-45 188.0 165 61.8
BcaC02g09665 Brassica carinata HOM05D005159 ORTHO05D006237 1.3e-45 188.0 150 66.7
A04p11610 Brassica napus HOM05D005159 ORTHO05D006237 1.3e-45 188.0 151 66.2
C04p45340 Brassica napus HOM05D005159 ORTHO05D006237 1.3e-45 188.0 150 66.7
BolC4t26116H Brassica oleracea HOM05D005159 ORTHO05D006237 1.3e-45 188.0 150 66.7
BraA04t16828Z Brassica rapa HOM05D005159 ORTHO05D006237 1.3e-45 188.0 150 66.7
Actinidia36292 Actinidia chinensis HOM05D005159 ORTHO05D006237 2.2e-45 187.2 132 73.5
MSTRG.15424 Avicennia marina HOM05D005159 ORTHO05D006237 6.4e-45 185.7 354 42.9
EL10Ac7g16490 Beta vulgaris HOM05D005159 ORTHO05D006237 8.3e-45 185.3 236 47.9
Aa31LG9G16930 Aethionema arabicum HOM05D005159 ORTHO05D006237 1.4e-44 184.5 351 42.5
MBI15_g18197_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 1.4e-44 184.5 352 41.2
PSO017G6426 Papaver somniferum HOM05D005159 ORTHO05D006237 1.9e-44 184.1 154 61.7
Atru.chr11.1725 Acer truncatum HOM05D005159 ORTHO05D006237 3.2e-44 183.3 302 48.3
Sc10g0001500 Simmondsia chinensis HOM05D005159 ORTHO05D006237 3.2e-44 183.3 339 41.0
Psat7g186040 Pisum sativum HOM05D002527 ORTHO05D002865 7.0e-44 182.2 149 64.4
Ah.08g217340 Amaranthus hybridus HOM05D005159 ORTHO05D006237 9.2e-44 181.8 154 62.3
Medtr1g090650 Medicago truncatula HOM05D005159 ORTHO05D006237 9.2e-44 181.8 159 60.4
Actinidia18107 Actinidia chinensis HOM05D005159 ORTHO05D006237 2.7e-43 180.3 354 40.4
CDE02G0002 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 4.6e-43 179.5 134 68.7
AUR62011452 Chenopodium quinoa HOM05D005159 ORTHO05D006237 1.0e-42 178.3 265 45.3
Lsat_1_v5_gn_8_24161 Lactuca sativa HOM05D005159 ORTHO05D006237 6.6e-42 175.6 169 60.9
PSO478G0642 Papaver somniferum HOM05D005159 ORTHO05D006237 6.6e-42 175.6 156 58.3
Phvul.001G061500 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 5.6e-41 172.6 160 62.5
BcaB06g27239 Brassica carinata HOM05D005159 ORTHO05D006237 9.5e-41 171.8 354 39.8
SalBow1G7987 Salvia bowleyana HOM05D005159 ORTHO05D006237 1.2e-40 171.4 352 41.2
Aqoxy3G00614 Aquilegia oxysepala HOM05D005159 ORTHO05D006237 2.8e-40 170.2 161 59.6
HPP92_015315 Vanilla planifolia HOM05D005159 ORTHO05D006237 1.1e-39 168.3 151 60.3
Lj6g0020881 Lotus japonicus HOM05D005159 ORTHO05D006237 1.4e-39 167.9 158 58.9
C06p18340 Brassica napus HOM05D005159 ORTHO05D006237 1.8e-39 167.5 161 60.2
BolC6t37046H Brassica oleracea HOM05D005159 ORTHO05D006237 1.8e-39 167.5 161 60.2
Sp7g03200 Schrenkiella parvula HOM05D005159 ORTHO05D006237 1.2e-38 164.9 324 37.3
CSS0013880 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.5e-38 164.5 133 66.2
Carub.0007s3714 Capsella rubella HOM05D005159 ORTHO05D006237 1.5e-38 164.5 357 37.3
Sopen02g034320 Solanum pennellii HOM05D005159 ORTHO05D006237 2.6e-38 163.7 339 37.8
Lalb_Chr18g0059201 Lupinus albus HOM05D005159 ORTHO05D006237 3.4e-38 163.3 356 37.9
Thhalv10028147m.g Eutrema salsugineum HOM05D005159 ORTHO05D006237 4.4e-38 162.9 360 38.3
AUR62026768 Chenopodium quinoa HOM05D005159 ORTHO05D006237 7.5e-38 162.2 134 64.9
CSS0007706 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.7e-37 161.0 135 63.7
CSS0044288 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.7e-37 161.0 135 63.7
vmacro18090 Vaccinium macrocarpon HOM05D005159 ORTHO05D006237 1.7e-37 161.0 180 53.3
VMungo1383G3720 Vigna mungo HOM05D005159 ORTHO05D006237 2.2e-37 160.6 339 39.8
AT5G38720 Arabidopsis thaliana HOM05D005159 ORTHO05D006237 1.1e-36 158.3 357 36.1
TAR629G0318 Trochodendron aralioides HOM05D005159 ORTHO05D006237 2.4e-36 157.1 138 63.8
ECA240G3626 Erigeron canadensis HOM05D005159 ORTHO05D006237 3.2e-36 156.8 387 35.9
COL.COLO4_37042 Corchorus olitorius HOM05D005159 ORTHO05D006237 4.1e-36 156.4 130 63.1
Nn8g41096 Nelumbo nucifera HOM05D005159 ORTHO05D006237 7.0e-36 155.6 162 56.2
SEGI_21798 Sequoiadendron giganteum HOM05D005159 ORTHO05D006237 9.2e-36 155.2 132 59.8
arahy.Tifrunner.gnm1.ann1.3J3UL0 Arachis hypogaea HOM05D005159 ORTHO05D006237 3.5e-35 153.3 138 60.9
TPR.G28602 Trifolium pratense HOM05D005159 ORTHO05D006237 1.0e-34 151.8 132 60.6
Zm00001eb253420 Zea mays HOM05D005159 ORTHO05D006237 3.0e-34 150.2 159 52.2
AL7G51700 Arabidopsis lyrata HOM05D005159 ORTHO05D006237 5.1e-34 149.4 347 34.9
BcaC08g44401 Brassica carinata HOM05D005159 ORTHO05D006237 5.1e-34 149.4 136 61.0
HanXRQChr03g0078031 Helianthus annuus HOM05D005159 ORTHO05D006237 8.6e-34 148.7 393 36.1
TAR371G0967 Trochodendron aralioides HOM05D005159 ORTHO05D006237 8.6e-34 148.7 295 39.0
Os02g0728700 Oryza sativa ssp. japonica HOM05D005159 ORTHO05D006237 2.8e-32 143.7 354 34.5
Rhsim08G0081100 Rhododendron simsii HOM05D005159 ORTHO05D006237 6.8e-31 139.0 361 36.8
CARHR291790 Cardamine hirsuta HOM05D005159 ORTHO05D006237 5.8e-30 136.0 145 56.6
CSS0028445 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 2.9e-29 133.7 133 58.6
Pp3c10_24110 Physcomitrium patens HOM05D005159 ORTHO05D006237 3.7e-29 133.3 157 45.9
Haze_14082 Corylus avellana HOM05D005159 ORTHO05D006237 3.2e-28 130.2 278 43.9
ATR0691G244 Amborella trichopoda HOM05D005159 ORTHO05D006237 7.1e-28 129.0 359 35.4
Lj7A7T32 Lonicera japonica HOM05D005159 ORTHO05D006237 4.3e-25 119.8 197 39.6
Mapoly0058s0026 Marchantia polymorpha HOM05D005159 ORTHO05D006237 6.2e-24 115.9 134 46.3
TAR629G0746 Trochodendron aralioides HOM05D005159 ORTHO05D006237 8.1e-24 115.5 87 69.0
SMO196G0176 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 2.4e-23 114.0 154 42.2
CBR_g4867 Chara braunii HOM05D005159 ORTHO05D006237 2.9e-21 107.1 135 43.7
AUR62013504 Chenopodium quinoa HOM05D000258 ORTHO05D006237 2.4e-20 104.0 89 64.0
MCO13G254 Micromonas commoda HOM05D005159 ORTHO05D006237 2.5e-17 94.0 132 34.8
SMO234G0023 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 2.4e-15 87.4 107 43.0
AagrBONN_evm.TU.Sc2ySwM_369.363 Anthoceros agrestis HOM05D005159 ORTHO05D006237 3.1e-15 87.0 234 34.6
Oeu062205.1 Olea europaea HOM05D005159 ORTHO05D006237 4.0e-15 86.7 66 65.2
Medtr8g085830 Medicago truncatula HOM05D005159 ORTHO05D006237 1.2e-14 85.1 99 50.5
arahy.Tifrunner.gnm1.ann1.YDKP0V Arachis hypogaea HOM05D005159 ORTHO05D006237 2.4e-12 77.4 82 53.7
CBR_g52693 Chara braunii HOM05D005159 ORTHO05D006237 2.1e-11 74.3 169 32.5
Cre01.g052200 Chlamydomonas reinhardtii HOM05D005159 ORTHO05D006237 2.7e-11 73.9 143 32.2
QL06p007211 Quercus lobata HOM05D005159 ORTHO05D006237 1.4e-07 61.6 57 57.9


User provided reference genes

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