Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 2058.9 1039 100.0
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 2026.9 1039 98.2
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1983.0 1039 96.6
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1973.7 1039 96.2
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1962.2 1056 94.8
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1842.4 1039 89.5
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1739.5 1037 84.5
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1701.4 1040 82.5
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1598.9 1030 77.5
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1588.5 1031 77.5
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1572.0 1039 76.5
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1546.2 1031 76.2
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1530.8 988 77.4
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1530.0 1046 74.1
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1528.8 1032 74.7
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1528.5 1033 75.0
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1527.7 1035 74.4
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1511.1 1034 74.4
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1507.3 1031 74.1
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1505.3 1035 74.0
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1505.0 1045 73.7
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1499.2 1032 74.0
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1497.3 1032 72.7
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1494.2 1035 73.3
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1493.8 1032 73.2
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1491.5 1033 73.2
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1488.0 1037 73.8
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1487.6 1040 72.7
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1486.5 1036 73.6
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1483.8 1032 73.7
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1480.7 1037 72.1
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1479.5 1037 72.0
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1478.8 1037 72.0
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1473.8 1056 71.1
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1473.8 1032 72.5
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1473.8 1039 72.3
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1471.8 1034 72.9
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1468.4 1042 73.0
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1452.6 1031 71.1
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1449.1 1032 71.9
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1449.1 1032 72.2
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1447.2 1033 71.2
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1439.1 1030 70.7
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1437.6 1036 71.0
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1433.3 1033 70.6
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1430.2 1080 68.5
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1425.6 1035 70.0
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1425.6 1025 70.5
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1423.3 1032 70.2
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1423.3 1025 70.2
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1422.5 1035 70.0
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1422.1 1036 70.6
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1419.8 1035 70.2
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1418.7 1033 69.7
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1418.7 1062 69.3
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1418.3 1035 70.2
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1416.0 1034 70.2
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1415.6 1044 69.6
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1415.6 995 72.7
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1414.4 1069 68.8
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1414.1 1034 70.1
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1413.7 1042 69.6
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1413.7 1034 70.1
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1411.7 1034 70.0
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1411.0 1034 70.0
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1411.0 996 72.4
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1411.0 950 76.0
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1410.6 1108 66.6
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1408.7 1035 69.3
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1407.9 1039 69.2
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1403.3 1042 69.5
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1401.3 1009 70.6
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1399.0 1069 68.1
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1397.9 1034 69.4
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1388.6 1044 68.6
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1382.1 1033 68.9
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1380.5 1057 68.2
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1377.1 1045 67.6
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1365.5 1036 66.9
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1364.7 1029 68.8
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1362.4 1036 67.2
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1361.3 1037 66.6
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1357.8 1132 63.6
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1346.6 1041 65.3
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1345.1 1030 68.1
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1342.4 1045 65.5
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1339.7 1031 68.2
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1325.5 1038 65.2
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1324.7 1009 67.4
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1318.9 1033 67.0
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1296.2 1050 64.8
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1293.9 1048 63.7
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1292.3 1051 63.6
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1289.2 1037 65.4
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1288.9 1040 64.6
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1275.8 1040 64.7
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1272.3 838 78.0
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1271.9 1039 63.9
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1265.8 1012 64.3
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1263.1 1165 57.3
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1262.7 1031 64.4
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1259.6 992 66.7
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1250.3 1198 55.9
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1240.7 1058 60.9
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1238.4 971 66.3
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1229.5 945 67.5
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1225.3 1041 61.9
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1221.5 882 71.5
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1217.6 1034 62.5
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1216.1 1062 61.3
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1214.5 1033 62.1
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1213.4 1032 63.4
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1201.4 1029 60.8
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1189.5 1036 59.8
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1173.3 1038 58.6
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1166.8 1036 59.5
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1152.1 1014 61.9
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1119.0 888 65.9
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1114.0 933 63.9
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1102.4 963 60.5
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 3.9e-300 1035.0 946 59.2
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 2.7e-277 959.1 776 65.2
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 6.6e-276 954.5 618 77.7
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 1.5e-275 953.4 897 57.2
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 5.3e-265 918.3 1055 49.4
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 4.2e-262 908.7 624 73.9
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 2.1e-258 896.3 1076 47.2
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 2.4e-249 866.3 1009 48.1
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 3.3e-243 845.9 642 68.7
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 6.3e-234 815.1 1056 45.1
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.8e-233 813.5 1046 44.9
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 5.9e-232 808.5 619 67.5
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 6.7e-220 768.5 1245 40.3
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 6.3e-210 735.3 902 44.0
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 4.0e-180 636.3 416 76.7
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.7e-170 604.4 385 78.2
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 2.5e-158 563.9 414 70.0
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 6.9e-156 555.8 442 66.7
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 1.4e-153 548.1 512 60.2
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.6e-149 534.6 561 51.7
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 4.9e-138 496.5 534 52.2
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 9.4e-105 386.0 262 75.6
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 3.6e-104 384.0 290 69.7
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 3.3e-102 377.5 205 84.9
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.5e-97 362.1 304 63.5
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 8.3e-85 319.7 278 64.0
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 1.7e-82 312.0 264 62.5
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 3.3e-81 307.8 871 28.5
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 3.2e-76 291.2 162 81.5
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 4.7e-72 277.3 150 84.7
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 6.2e-64 250.4 219 59.4
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 1.7e-58 232.3 299 49.8
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 3.3e-57 228.0 328 46.0
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 4.9e-53 214.2 147 77.6
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 5.2e-47 194.1 114 76.3
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 7.1e-44 183.7 494 30.6
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 9.6e-41 173.3 129 69.8
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 1.6e-40 172.6 198 50.5
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.8e-40 171.8 91 80.2
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 1.0e-34 153.3 175 48.0
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 1.3e-34 152.9 131 61.8
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.8e-31 142.5 113 62.8
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 3.2e-28 131.7 77 72.7
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 1.6e-27 129.4 81 76.5
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 3.0e-26 125.2 89 71.9
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 8.4e-21 107.1 56 87.5
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 6.0e-19 100.9 79 64.6
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 6.0e-19 100.9 79 64.6
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 6.0e-19 100.9 79 64.6
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 1.3e-16 93.2 86 64.0
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 4.8e-16 91.3 78 53.8
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 2.7e-11 75.5 46 76.1
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.8e-10 72.8 50 68.0
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 1.8e-10 72.8 79 53.2
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 1.9e-09 69.3 64 53.1


User provided reference genes

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