Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G3567 Fragaria x ananassa HOM05D001474 ORTHO05D001461 4.6e-85 317.8 153 100.0
FAN13G2011 Fragaria x ananassa HOM05D001474 ORTHO05D001461 1.4e-76 289.7 162 87.0
FAN01G1996 Fragaria x ananassa HOM05D000009 ORTHO05D001461 9.7e-75 283.5 154 89.0
FvH4_7g11350 Fragaria vesca HOM05D001474 ORTHO05D001461 6.3e-74 280.8 152 87.5
FAN06G0799 Fragaria x ananassa HOM05D001474 ORTHO05D001461 6.3e-74 280.8 152 87.5
FvH4_7g11370 Fragaria vesca HOM05D001474 ORTHO05D001461 8.2e-74 280.4 152 87.5
FAN06G4417 Fragaria x ananassa HOM05D000009 ORTHO05D001461 2.4e-73 278.9 152 86.8
FAN10G3912 Fragaria x ananassa HOM05D001474 ORTHO05D001461 4.1e-73 278.1 152 86.8
RcHm_v2.0_Chr1g0349651 Rosa chinensis HOM05D001474 ORTHO05D001461 1.7e-71 272.7 152 84.2
RcHm_v2.0_Chr1g0349561 Rosa chinensis HOM05D001474 ORTHO05D001461 1.1e-70 270.0 152 82.9
RcHm_v2.0_Chr7g0223151 Rosa chinensis HOM05D000873 ORTHO05D001461 2.6e-67 258.8 151 80.8
RcHm_v2.0_Chr4g0403521 Rosa chinensis HOM05D001474 ORTHO05D001461 8.2e-66 253.8 174 73.0
MD07G1118400 Malus domestica HOM05D001474 ORTHO05D001461 4.7e-61 238.0 153 71.2
MD07G1118600 Malus domestica HOM05D001474 ORTHO05D001461 4.7e-61 238.0 153 71.2
Prupe.2G141300 Prunus persica HOM05D001474 ORTHO05D001461 4.7e-61 238.0 153 72.5
FAN10G3888 Fragaria x ananassa HOM05D001474 ORTHO05D001461 1.8e-60 236.1 152 77.0
MD02G1206000 Malus domestica HOM05D001474 ORTHO05D001461 4.0e-60 235.0 153 70.6
GSVIVG01027655001 Vitis vinifera HOM05D001474 ORTHO05D001461 1.3e-58 229.9 153 71.2
QL04p040000 Quercus lobata HOM05D001474 ORTHO05D001461 5.3e-57 224.6 160 67.5
CiPaw.13G034300 Carya illinoinensis HOM05D001474 ORTHO05D001461 9.1e-57 223.8 155 69.7
PGSC0003DMG400026008 Solanum tuberosum HOM05D001474 ORTHO05D001461 2.0e-56 222.6 156 67.3
CANSAT56G4331 Cannabis sativa HOM05D001474 ORTHO05D001461 2.7e-56 222.2 160 67.5
Eucgr.E01451 Eucalyptus grandis HOM05D001474 ORTHO05D001461 2.7e-56 222.2 149 70.5
CSS0019526 Camellia sinensis var. sinensis HOM05D001474 ORTHO05D001461 4.5e-56 221.5 159 67.3
Thecc.01G379400 Theobroma cacao HOM05D001474 ORTHO05D001461 4.5e-56 221.5 154 70.1
Manes.01G267700 Manihot esculenta HOM05D001474 ORTHO05D001461 1.7e-55 219.5 156 67.3
Sed0006162 Sechium edule HOM05D001474 ORTHO05D001461 1.7e-55 219.5 158 65.8
Sopen01g036820 Solanum pennellii HOM05D001474 ORTHO05D001461 1.7e-55 219.5 156 66.0
Cfa011193 Carpinus fangiana HOM05D001474 ORTHO05D001461 2.2e-55 219.2 160 65.0
Ciclev10020473m.g Citrus clementina HOM05D001474 ORTHO05D001461 3.8e-55 218.4 155 67.7
Potri.014G067300 Populus trichocarpa HOM05D001474 ORTHO05D001461 5.0e-55 218.0 148 70.3
Duzib138G0487 Durio zibethinus HOM05D001474 ORTHO05D001461 6.5e-55 217.6 155 68.4
Gohir.A12G101300 Gossypium hirsutum HOM05D001474 ORTHO05D001461 6.5e-55 217.6 155 69.0
Duzib138G1270 Durio zibethinus HOM05D001474 ORTHO05D001461 8.5e-55 217.2 155 68.4
TAR375G0828 Trochodendron aralioides HOM05D001474 ORTHO05D001461 8.5e-55 217.2 156 67.3
Cpa.g.c30120 Carica papaya HOM05D001474 ORTHO05D001461 1.5e-54 216.5 153 68.0
Hma1.2p1_0072F.1_g038270 Hydrangea macrophylla HOM05D001474 ORTHO05D001461 1.5e-54 216.5 154 67.5
VMungo0331G1224 Vigna mungo HOM05D001474 ORTHO05D001461 1.5e-54 216.5 151 68.2
CAN.G911.5 Capsicum annuum HOM05D001474 ORTHO05D001461 2.5e-54 215.7 156 67.3
MELO3C006206.2 Cucumis melo HOM05D001474 ORTHO05D001461 2.5e-54 215.7 159 64.8
CsaV3_3G009840 Cucumis sativus L. HOM05D001474 ORTHO05D001461 2.5e-54 215.7 159 64.8
Psat7g230720 Pisum sativum HOM05D001474 ORTHO05D001461 2.5e-54 215.7 155 64.5
Lj3g0013625 Lotus japonicus HOM05D001474 ORTHO05D001461 3.2e-54 215.3 151 66.9
Ca_18225_v3 Cicer arietinum L. HOM05D001474 ORTHO05D001461 5.5e-54 214.5 149 67.8
MSTRG.17173 Avicennia marina HOM05D001474 ORTHO05D001461 7.2e-54 214.2 159 62.9
EL10Ac1g00863 Beta vulgaris HOM05D001474 ORTHO05D001461 7.2e-54 214.2 152 69.1
Gorai.008G113300 Gossypium raimondii HOM05D001474 ORTHO05D001461 7.2e-54 214.2 155 68.4
Gohir.D12G104200 Gossypium hirsutum HOM05D001474 ORTHO05D001461 9.4e-54 213.8 155 69.0
Lj7A531T58 Lonicera japonica HOM05D001474 ORTHO05D001461 9.4e-54 213.8 148 65.5
Lalb_Chr07g0190021 Lupinus albus HOM05D001474 ORTHO05D001461 9.4e-54 213.8 161 62.7
TPR.G7601 Trifolium pratense HOM05D001474 ORTHO05D001461 9.4e-54 213.8 150 67.3
SGA_v2.0_scaffold153G36983 Striga asiatica HOM05D001474 ORTHO05D001461 2.1e-53 212.6 159 62.3
arahy.Tifrunner.gnm1.ann1.8H5FPK Arachis hypogaea HOM05D001474 ORTHO05D001461 2.7e-53 212.2 154 66.2
arahy.Tifrunner.gnm1.ann1.931R8V Arachis hypogaea HOM05D001474 ORTHO05D001461 2.7e-53 212.2 158 64.6
Glyma.01G138300 Glycine max HOM05D001474 ORTHO05D001461 2.7e-53 212.2 150 66.0
TWI14G0338 Tripterygium wilfordii HOM05D001474 ORTHO05D001461 4.7e-53 211.5 154 66.2
TWI14G0591 Tripterygium wilfordii HOM05D001474 ORTHO05D001461 4.7e-53 211.5 154 66.2
vmacro13424 Vaccinium macrocarpon HOM05D001474 ORTHO05D001461 4.7e-53 211.5 181 59.1
CSS0044636 Camellia sinensis var. sinensis HOM05D001474 ORTHO05D001461 8.0e-53 210.7 155 63.9
THA.LOC104802454 Tarenaya hassleriana HOM05D001474 ORTHO05D001461 1.0e-52 210.3 159 63.5
Dinv44138 Davidia involucrata HOM05D000036 ORTHO05D001461 1.4e-52 209.9 155 64.5
TWI14G0834 Tripterygium wilfordii HOM05D001474 ORTHO05D001461 1.4e-52 209.9 154 66.2
Phvul.010G080500 Phaseolus vulgaris HOM05D001474 ORTHO05D001461 3.0e-52 208.8 151 66.9
Glyma.03G028800 Glycine max HOM05D001474 ORTHO05D001461 4.0e-52 208.4 150 64.7
Migut.B01612 Erythranthe guttata HOM05D001474 ORTHO05D001461 5.2e-52 208.0 154 63.6
Sc23g0001150 Simmondsia chinensis HOM05D001474 ORTHO05D001461 5.2e-52 208.0 158 62.0
Atru.chr5.276 Acer truncatum HOM05D001474 ORTHO05D001461 8.8e-52 207.2 154 61.7
AT2G45240 Arabidopsis thaliana HOM05D001474 ORTHO05D001461 8.8e-52 207.2 154 62.3
AUR62004185 Chenopodium quinoa HOM05D001474 ORTHO05D001461 1.5e-51 206.5 152 61.8
COL.COLO4_12520 Corchorus olitorius HOM05D001474 ORTHO05D001461 1.5e-51 206.5 149 65.1
MSTRG.20735 Avicennia marina HOM05D001474 ORTHO05D001461 2.0e-51 206.1 154 63.6
Carub.0004s2785 Capsella rubella HOM05D001474 ORTHO05D001461 2.6e-51 205.7 156 62.8
Cc02_g24180 Coffea canephora HOM05D001474 ORTHO05D001461 2.6e-51 205.7 156 62.8
Thhalv10001475m.g Eutrema salsugineum HOM05D001474 ORTHO05D001461 2.6e-51 205.7 159 62.3
AUR62013685 Chenopodium quinoa HOM05D001474 ORTHO05D001461 5.7e-51 204.5 152 61.8
CARHR140460 Cardamine hirsuta HOM05D001474 ORTHO05D001461 9.8e-51 203.8 159 60.4
PGR042G1031 Punica granatum HOM05D001474 ORTHO05D001461 9.8e-51 203.8 149 63.8
Rhsim07G0029600 Rhododendron simsii HOM05D001474 ORTHO05D001461 2.2e-50 202.6 159 59.1
SalBow5G1473 Salvia bowleyana HOM05D001474 ORTHO05D001461 2.8e-50 202.2 154 63.0
PSO782G5252 Papaver somniferum HOM05D001474 ORTHO05D001461 6.3e-50 201.1 152 65.1
Sp4g27270 Schrenkiella parvula HOM05D001474 ORTHO05D001461 6.3e-50 201.1 159 60.4
SpUn0031_0050 Schrenkiella parvula HOM05D001474 ORTHO05D001461 6.3e-50 201.1 159 60.4
BcaB02g08948 Brassica carinata HOM05D001474 ORTHO05D001461 8.3e-50 200.7 155 62.6
ClCG05G002410 Citrullus lanatus HOM05D001474 ORTHO05D001461 1.4e-49 199.9 155 63.9
MBI04_g11447_MAGBIO Magnolia biondii HOM05D001474 ORTHO05D001461 1.4e-49 199.9 171 58.5
Aa31LG1G26780 Aethionema arabicum HOM05D001474 ORTHO05D001461 2.4e-49 199.1 155 60.0
AL4G44350 Arabidopsis lyrata HOM05D001474 ORTHO05D001461 2.4e-49 199.1 153 62.1
Duzib133G0123 Durio zibethinus HOM05D001474 ORTHO05D001461 2.4e-49 199.1 174 59.2
CDE04G1340 Ceratophyllum demersum HOM05D001474 ORTHO05D001461 3.1e-49 198.7 156 62.2
PSO170G4369 Papaver somniferum HOM05D001474 ORTHO05D001461 4.1e-49 198.4 152 63.8
Nn1g01106 Nelumbo nucifera HOM05D001474 ORTHO05D001461 5.4e-49 198.0 142 67.6
Solyc01g091070.3 Solanum lycopersicum HOM05D001474 ORTHO05D001461 5.4e-49 198.0 141 66.0
Lalb_Chr12g0208091 Lupinus albus HOM05D001474 ORTHO05D001461 2.7e-48 195.7 161 59.0
Oeu037931.3 Olea europaea HOM05D001474 ORTHO05D001461 3.5e-48 195.3 172 55.8
A05p05230 Brassica napus HOM05D001474 ORTHO05D001461 5.9e-48 194.5 159 60.4
BraA05t19493Z Brassica rapa HOM05D001474 ORTHO05D001461 5.9e-48 194.5 159 60.4
HPP92_022304 Vanilla planifolia HOM05D001474 ORTHO05D001461 5.9e-48 194.5 150 62.7
BcaC02g12234 Brassica carinata HOM05D001474 ORTHO05D001461 7.7e-48 194.1 156 61.5
C04p06150 Brassica napus HOM05D001474 ORTHO05D001461 7.7e-48 194.1 156 61.5
BolC4t22239H Brassica oleracea HOM05D001474 ORTHO05D001461 7.7e-48 194.1 156 61.5
Haze_02654 Corylus avellana HOM05D001474 ORTHO05D001461 1.7e-47 193.0 160 59.4
ECA236G0927 Erigeron canadensis HOM05D001474 ORTHO05D001461 1.7e-47 193.0 155 60.0
CiPaw.13G034400 Carya illinoinensis HOM05D001474 ORTHO05D001461 5.0e-47 191.4 137 68.6
Hund17036 Selenicereus undatus HOM05D001474 ORTHO05D001461 2.5e-46 189.1 150 60.7
Aqoxy7G00709 Aquilegia oxysepala HOM05D001474 ORTHO05D001461 4.2e-46 188.3 147 63.9
SalBow5G3084 Salvia bowleyana HOM05D001474 ORTHO05D001461 5.5e-46 188.0 150 60.0
Zm00001eb220650 Zea mays HOM05D001474 ORTHO05D001461 5.5e-46 188.0 151 60.9
Sabra14G0047300 Salix brachista HOM05D001474 ORTHO05D001461 2.1e-45 186.0 148 64.2
Migut.O00813 Erythranthe guttata HOM05D001474 ORTHO05D001461 2.7e-45 185.7 141 62.4
Rhsim07G0029400 Rhododendron simsii HOM05D001474 ORTHO05D001461 1.4e-44 183.3 142 59.9
Peaxi162Scf00013g02918 Petunia axillaris HOM05D001474 ORTHO05D001461 1.8e-44 183.0 156 57.1
Os10g0508400 Oryza sativa ssp. japonica HOM05D001474 ORTHO05D001461 2.3e-44 182.6 148 58.8
RhsimUnG0228100 Rhododendron simsii HOM05D001474 ORTHO05D001461 4.0e-44 181.8 142 59.2
HanXRQChr06g0169451 Helianthus annuus HOM05D001474 ORTHO05D001461 3.4e-43 178.7 143 60.8
DCAR_008547 Daucus carota HOM05D001474 ORTHO05D001461 1.7e-42 176.4 118 70.3
Phvul.010G080400 Phaseolus vulgaris HOM05D001474 ORTHO05D001461 2.2e-42 176.0 133 64.7
MBI12_g24113_MAGBIO Magnolia biondii HOM05D002462 ORTHO05D002893 3.7e-42 175.3 156 55.1
SMO171G0038 Selaginella moellendorffii HOM05D001474 ORTHO05D001461 6.3e-42 174.5 151 50.3
Nitab4.5_0010730g0010 Nicotiana tabacum HOM05D001474 ORTHO05D001461 1.8e-41 172.9 118 67.8
Lsat_1_v5_gn_7_9300 Lactuca sativa HOM05D001474 ORTHO05D001461 2.3e-39 166.0 154 52.6
VMungo0331G0694 Vigna mungo HOM05D001474 ORTHO05D001461 5.0e-39 164.9 115 66.1
Mapoly0013s0165 Marchantia polymorpha HOM05D001474 ORTHO05D001461 8.6e-39 164.1 156 50.0
Pp3c21_22170 Physcomitrium patens HOM05D001474 ORTHO05D001461 3.6e-37 158.7 159 49.1
unitig_26.g8899 Utricularia gibba HOM05D001474 ORTHO05D001461 8.0e-37 157.5 147 51.7
vmacro13425 Vaccinium macrocarpon HOM05D001474 ORTHO05D001461 6.8e-36 154.5 105 65.7
CBR_g18681 Chara braunii HOM05D001474 ORTHO05D001461 1.3e-34 150.2 183 44.3
AagrBONN_evm.TU.Sc2ySwM_368.1141 Anthoceros agrestis HOM05D001474 ORTHO05D001461 1.7e-34 149.8 160 46.9
Nitab4.5_0000457g0040 Nicotiana tabacum HOM05D001474 ORTHO05D001461 5.0e-31 138.3 92 66.3
Cre06.g279750 Chlamydomonas reinhardtii HOM05D001474 ORTHO05D001461 1.6e-29 133.3 146 43.8
FAN03G2074 Fragaria x ananassa HOM05D001474 ORTHO05D001461 9.8e-27 124.0 145 50.3
RcHm_v2.0_Chr1g0360371 Rosa chinensis HOM05D001742 ORTHO05D001689 2.3e-20 102.8 58 79.3
Pp3c21_22630 Physcomitrium patens HOM05D001474 ORTHO05D001461 6.8e-20 101.3 78 55.1
Zm00001eb043920 Zea mays HOM05D001474 ORTHO05D001461 6.8e-20 101.3 151 41.1
SHI13526 Sapria himalayana HOM05D001474 ORTHO05D001461 1.9e-17 93.2 121 44.6
SEGI_25320 Sequoiadendron giganteum HOM05D001474 ORTHO05D001461 1.9e-17 93.2 85 49.4
Dinv32361 Davidia involucrata HOM05D001474 ORTHO05D001461 1.2e-16 90.5 57 68.4
SalBow1G0726 Salvia bowleyana HOM05D001474 ORTHO05D050792 1.6e-16 90.1 85 52.9
PRCOL_00001165 Prasinoderma coloniale HOM05D001474 ORTHO05D001461 4.7e-13 78.6 91 44.0
Haze_26360 Corylus avellana HOM05D001474 ORTHO05D001461 6.8e-12 74.7 143 34.3
AUR62027685 Chenopodium quinoa HOM05D001474 ORTHO05D138152 1.3e-07 60.5 43 58.1
MCO09G086 Micromonas commoda HOM05D001474 ORTHO05D001461 2.3e-07 59.7 66 45.5
MCO11G197 Micromonas commoda HOM05D001474 ORTHO05D001461 3.0e-07 59.3 97 29.9
SalBow1G0906 Salvia bowleyana HOM05D001474 ORTHO05D050792 1.5e-06 57.0 44 63.6


User provided reference genes

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