Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 3.4e-82 308.9 241 100.0
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.9e-77 293.1 241 96.7
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.2e-76 290.4 241 96.3
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.1e-75 287.3 241 96.3
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 1.1e-69 267.3 150 94.0
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 1.0e-41 174.5 248 72.6
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 1.2e-31 141.0 157 58.6
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 3.7e-28 129.4 154 54.5
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 1.4e-24 117.5 192 43.2
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 2.5e-24 116.7 189 43.9
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 1.4e-22 110.9 185 40.0
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 6.7e-22 108.6 188 42.0
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 8.8e-22 108.2 170 44.1
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 2.2e-20 103.6 187 39.6
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 2.2e-20 103.6 186 39.2
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 4.8e-20 102.4 201 40.3
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 4.8e-20 102.4 186 39.2
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 6.3e-20 102.1 159 43.4
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 8.2e-20 101.7 219 37.9
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 7.0e-19 98.6 199 38.2
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 7.0e-19 98.6 200 37.5
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 9.1e-19 98.2 200 38.0
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 1.6e-18 97.4 215 37.2
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 5.9e-18 95.5 200 36.5
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 1.7e-17 94.0 169 42.6
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 1.5e-16 90.9 168 44.0
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 1.5e-16 90.9 168 44.0
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 1.5e-16 90.9 176 40.3
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 3.2e-16 89.7 196 39.3
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 3.2e-16 89.7 195 38.5
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 4.2e-16 89.4 161 44.7
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 5.5e-16 89.0 200 35.5
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 7.2e-16 88.6 204 36.3
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 9.4e-16 88.2 181 38.7
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 1.6e-15 87.4 161 42.9
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 2.1e-15 87.0 202 35.6
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 2.7e-15 86.7 188 36.2
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 3.6e-15 86.3 188 36.2
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 1.4e-14 84.3 203 35.5
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.8e-14 84.0 201 34.3
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 1.8e-14 84.0 190 36.8
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 3.0e-14 83.2 202 34.2
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 4.0e-14 82.8 160 40.0
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 6.7e-14 82.0 202 35.1
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 8.8e-14 81.6 201 34.8
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 1.2e-13 81.3 169 39.6
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 3.3e-13 79.7 218 33.5
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 3.3e-13 79.7 97 49.5
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 4.4e-13 79.3 184 37.5
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 4.4e-13 79.3 187 36.9
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 5.7e-13 79.0 208 34.1
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 7.5e-13 78.6 196 35.2
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 9.7e-13 78.2 218 33.0
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.3e-12 77.8 186 33.3
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 1.7e-12 77.4 184 38.6
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 1.7e-12 77.4 214 30.8
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 2.8e-12 76.6 193 34.7
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 3.7e-12 76.3 218 30.7
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 4.8e-12 75.9 205 32.7
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 8.2e-12 75.1 176 38.6
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 2.4e-11 73.6 206 34.5
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 3.1e-11 73.2 173 38.2
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 4.1e-11 72.8 186 38.7
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 4.1e-11 72.8 70 58.6
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 5.3e-11 72.4 158 36.1
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 5.3e-11 72.4 202 35.6
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 5.3e-11 72.4 201 33.8
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 7.0e-11 72.0 190 35.8
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 9.1e-11 71.6 181 34.3
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 1.6e-10 70.9 180 38.9
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 2.0e-10 70.5 154 37.0
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 2.0e-10 70.5 187 35.3
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 3.5e-10 69.7 154 37.0
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 5.9e-10 68.9 156 35.3
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 1.0e-09 68.2 75 53.3
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 1.3e-09 67.8 163 41.1
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 1.7e-09 67.4 203 33.5
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.7e-09 67.4 183 32.8
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 1.7e-09 67.4 52 61.5
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 2.9e-09 66.6 175 33.7
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 2.9e-09 66.6 75 48.0
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 3.8e-09 66.2 47 61.7
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 3.8e-09 66.2 76 46.1
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 5.0e-09 65.9 184 33.2
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 5.0e-09 65.9 178 34.3
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 6.5e-09 65.5 75 53.3
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 8.5e-09 65.1 192 32.3
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 1.5e-08 64.3 161 34.2
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 1.5e-08 64.3 195 30.8
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 1.9e-08 63.9 187 30.5
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 2.5e-08 63.5 161 33.5
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 2.5e-08 63.5 184 32.6
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 3.2e-08 63.2 159 34.0
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 3.2e-08 63.2 65 47.7
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 4.2e-08 62.8 190 31.1
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 4.2e-08 62.8 200 30.5
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 5.5e-08 62.4 42 64.3
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 5.5e-08 62.4 38 76.3
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 7.2e-08 62.0 187 31.6
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 7.2e-08 62.0 53 52.8
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 7.2e-08 62.0 55 54.5
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 2.1e-07 60.5 184 31.5
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 2.7e-07 60.1 171 33.3
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 3.6e-07 59.7 167 32.3
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 3.6e-07 59.7 190 29.5
FAN14G4553 Fragaria x ananassa HOM05D062194 ORTHO05D045419 6.1e-07 58.9 92 52.2
FvH4_6g30360 Fragaria vesca HOM05D062194 ORTHO05D045419 1.8e-06 57.4 82 52.4
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 1.8e-06 57.4 163 33.1
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 8.8e-06 55.1 177 30.5


User provided reference genes

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