Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 0.0e+00 1333.5 660 100.0
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 0.0e+00 1267.3 662 95.8
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 0.0e+00 1255.7 646 96.4
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 0.0e+00 1201.0 662 92.3
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 0.0e+00 1177.2 649 90.4
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 1.0e-301 1039.6 651 78.3
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 2.5e-300 1035.0 653 78.9
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 2.4e-295 1018.5 654 78.0
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 7.4e-273 943.7 653 72.9
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 4.1e-271 937.9 653 71.8
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 3.6e-267 924.9 682 69.5
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 4.0e-266 921.4 649 70.1
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.3e-261 906.4 655 67.8
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 5.0e-261 904.4 656 68.1
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 1.5e-257 892.9 652 68.4
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 3.7e-256 888.3 658 67.6
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 2.7e-254 882.1 656 66.5
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 2.5e-252 875.5 654 66.5
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 1.2e-251 873.2 650 67.2
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 2.7e-251 872.1 653 66.8
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 3.6e-251 871.7 652 67.0
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 6.1e-251 870.9 652 66.6
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 8.8e-250 867.1 654 66.4
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 1.2e-249 866.7 652 66.4
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 1.3e-248 863.2 650 66.0
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 2.2e-248 862.4 653 66.0
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 2.8e-248 862.1 653 65.2
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 3.7e-248 861.7 652 66.1
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 8.3e-248 860.5 657 65.3
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 7.0e-247 857.4 654 65.7
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 7.0e-247 857.4 654 65.1
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 4.5e-246 854.7 649 65.0
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 7.7e-246 854.0 652 65.6
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 1.0e-245 853.6 652 65.5
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 1.3e-245 853.2 654 64.5
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 2.9e-245 852.0 657 65.6
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 1.2e-243 846.7 665 63.9
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 1.2e-243 846.7 657 65.1
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 1.2e-243 846.7 654 65.4
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 2.8e-243 845.5 622 67.2
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 6.1e-243 844.3 650 65.4
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 1.0e-242 843.6 653 63.4
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 1.8e-242 842.8 650 65.2
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 6.8e-242 840.9 650 65.5
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 3.4e-241 838.6 665 63.2
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 4.4e-241 838.2 629 67.9
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 7.5e-241 837.4 628 67.7
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 7.5e-241 837.4 650 64.6
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 1.3e-240 836.6 654 63.8
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 6.4e-240 834.3 649 65.2
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 2.4e-239 832.4 649 64.6
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 7.0e-239 830.9 651 65.3
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 1.6e-238 829.7 649 64.4
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 1.6e-238 829.7 649 64.4
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 2.0e-238 829.3 655 63.4
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 4.3e-236 821.6 541 74.1
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 5.6e-236 821.2 653 64.6
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 8.0e-235 817.4 656 63.4
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 8.9e-234 813.9 655 63.1
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 3.7e-232 808.5 621 66.0
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 8.3e-232 807.4 657 62.3
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 8.3e-232 807.4 652 62.4
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 1.4e-231 806.6 655 60.2
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 7.0e-231 804.3 659 61.8
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 1.6e-230 803.1 650 61.7
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 7.8e-230 800.8 646 62.1
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 2.5e-228 795.8 660 61.8
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 4.3e-228 795.0 659 61.9
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 4.3e-228 795.0 651 61.6
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 5.6e-228 794.7 651 61.1
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 9.5e-228 793.9 657 62.3
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 1.6e-227 793.1 654 61.6
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 1.5e-225 786.6 652 61.7
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 1.7e-224 783.1 656 61.1
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 3.7e-224 781.9 663 61.1
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 1.7e-221 773.1 616 63.1
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 6.6e-221 771.2 656 59.8
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 2.5e-220 769.2 658 59.9
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 9.9e-217 757.3 664 58.1
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 1.3e-216 756.9 684 58.6
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 6.9e-210 734.6 646 56.3
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 9.9e-209 730.7 644 58.1
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 1.1e-207 727.2 664 55.4
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 7.1e-199 698.0 653 56.2
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 3.5e-198 695.7 655 55.6
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 3.7e-195 685.6 575 60.2
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 6.9e-186 654.8 507 64.7
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 9.7e-180 634.4 688 51.0
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 1.3e-179 634.0 488 64.8
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 4.8e-179 632.1 589 54.2
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.3e-168 597.4 621 53.8
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 2.2e-163 580.1 577 54.6
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 2.0e-156 557.0 664 47.7
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 1.9e-151 540.4 476 59.0
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 4.2e-151 539.3 590 50.5
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 5.9e-145 518.8 284 92.6
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 2.0e-140 503.8 651 43.0
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 4.4e-132 476.1 645 42.3
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 2.4e-130 470.3 630 43.5
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 2.0e-121 440.7 553 46.5
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 5.0e-120 436.0 257 82.5
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 8.9e-109 398.7 393 50.9
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 2.1e-102 377.5 224 87.5
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 5.8e-100 369.4 358 52.5
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 2.7e-97 360.5 294 63.3
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 7.3e-95 352.4 486 42.8
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 2.8e-94 350.5 639 37.7
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 3.1e-93 347.1 424 43.6
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 5.2e-93 346.3 504 40.9
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 2.7e-89 334.0 181 84.5
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.4e-77 295.0 200 71.0
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 1.3e-54 218.8 170 64.1
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 1.5e-52 211.8 103 92.2
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 1.7e-51 208.4 106 85.8
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 1.4e-42 178.7 491 31.8
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 3.1e-37 161.0 140 61.4
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 8.5e-35 152.9 203 41.4
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 1.9e-34 151.8 100 77.0
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 6.7e-32 143.3 187 42.8
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.2e-28 132.5 151 48.3
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 2.1e-25 121.7 89 68.5
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 2.1e-25 121.7 58 87.9
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 3.7e-22 110.9 86 60.5
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 3.1e-21 107.8 105 50.5
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 2.1e-17 95.1 72 61.1
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 3.7e-14 84.3 78 59.0
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 4.9e-14 84.0 77 59.7
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 6.3e-14 83.6 77 58.4
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 2.4e-13 81.6 77 58.4
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 3.1e-13 81.3 77 57.1
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 2.0e-12 78.6 77 57.1
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 1.2e-09 69.3 94 42.6
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 2.8e-09 68.2 76 46.1
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 2.3e-08 65.1 114 40.4
BcaB01g00966 Brassica carinata HOM05D006000 ORTHO05D007749 2.3e-08 65.1 150 36.0
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 8.9e-08 63.2 82 40.2
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 1.2e-07 62.8 88 45.5


User provided reference genes

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