Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 3.8e-282 974.2 491 100.0
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 8.3e-253 876.7 510 88.4
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 2.1e-219 765.8 491 83.1
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 1.3e-218 763.1 491 83.1
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 7.2e-188 661.0 510 72.5
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 1.6e-150 537.0 512 61.5
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 6.4e-136 488.4 423 63.1
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 2.0e-134 483.4 432 62.3
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 1.7e-133 480.3 430 61.9
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 2.5e-132 476.5 482 57.5
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 1.2e-131 474.2 453 59.4
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 1.2e-131 474.2 456 58.3
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 3.6e-131 472.6 482 57.1
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 8.0e-131 471.5 427 61.4
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 1.1e-130 471.1 424 61.6
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 2.3e-130 469.9 435 61.6
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 1.2e-129 467.6 503 54.5
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 1.2e-129 467.6 511 53.8
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 2.6e-129 466.5 504 55.2
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 2.6e-129 466.5 459 57.3
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 2.6e-129 466.5 488 56.1
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 3.4e-129 466.1 514 54.5
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 5.8e-129 465.3 429 60.1
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 1.3e-128 464.2 455 58.9
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 2.9e-128 463.0 423 61.2
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 2.9e-128 463.0 439 58.3
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 6.4e-128 461.8 422 60.0
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 6.4e-128 461.8 418 61.0
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 1.9e-127 460.3 495 54.5
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 2.4e-127 459.9 419 61.1
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 5.4e-127 458.8 495 56.2
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 9.2e-127 458.0 420 60.2
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 2.1e-126 456.8 410 60.2
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 2.7e-126 456.4 405 62.0
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 4.6e-126 455.7 436 56.7
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 4.6e-126 455.7 426 59.4
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 7.8e-126 454.9 407 62.7
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 7.8e-126 454.9 458 55.5
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 1.0e-125 454.5 420 61.0
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 1.3e-125 454.1 421 59.6
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 2.3e-125 453.4 420 59.5
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 2.3e-125 453.4 389 63.2
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 3.9e-125 452.6 422 59.5
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 3.9e-125 452.6 433 59.8
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 5.1e-125 452.2 501 52.5
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 1.1e-124 451.1 433 58.4
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 1.1e-124 451.1 445 56.0
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 4.3e-124 449.1 491 52.7
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 7.3e-124 448.4 403 60.8
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 2.1e-123 446.8 425 58.1
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 2.1e-123 446.8 416 57.9
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 3.6e-123 446.0 492 52.6
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 1.1e-122 444.5 469 54.6
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 1.1e-122 444.5 423 56.3
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 1.1e-122 444.5 433 58.4
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.4e-122 444.1 418 56.9
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 3.1e-122 443.0 452 53.5
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 1.2e-121 441.0 374 64.4
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 4.4e-121 439.1 417 57.1
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 2.2e-120 436.8 467 54.4
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 6.4e-120 435.3 418 57.2
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 6.4e-120 435.3 431 55.0
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 8.3e-120 434.9 403 59.3
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 1.1e-119 434.5 431 56.1
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 1.1e-119 434.5 378 60.3
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 1.2e-118 431.0 513 50.7
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 3.5e-118 429.5 466 53.9
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 7.8e-118 428.3 371 62.0
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 5.1e-117 425.6 428 54.4
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 6.6e-117 425.2 430 54.4
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 8.6e-117 424.9 397 58.7
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 8.6e-117 424.9 425 56.5
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 1.1e-116 424.5 404 59.9
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 1.2e-115 421.0 599 45.4
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 4.7e-115 419.1 418 56.5
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 4.7e-115 419.1 422 56.2
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 4.0e-114 416.0 494 51.0
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 2.6e-113 413.3 425 55.1
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 5.8e-113 412.1 427 54.6
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 1.3e-112 411.0 354 63.8
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 1.9e-111 407.1 348 62.4
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 9.3e-111 404.8 434 53.2
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 3.9e-109 399.4 355 59.4
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 8.7e-109 398.3 426 52.3
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 3.4e-105 386.3 338 67.5
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 3.2e-103 379.8 423 51.1
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 1.3e-101 374.4 434 51.2
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 2.3e-101 373.6 340 60.6
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 4.0e-98 362.8 461 45.1
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 4.5e-97 359.4 473 47.6
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 6.0e-94 349.0 450 45.8
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 1.3e-93 347.8 266 69.2
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 5.1e-93 345.9 455 47.7
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 3.7e-91 339.7 241 73.4
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 3.7e-91 339.7 451 45.5
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 1.4e-90 337.8 371 52.3
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 2.4e-90 337.0 320 57.8
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 1.0e-88 331.6 263 68.1
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 2.2e-88 330.5 284 64.1
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 7.1e-87 325.5 365 52.1
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 8.7e-85 318.5 433 45.0
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 6.2e-83 312.4 465 43.0
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 3.3e-76 290.0 260 60.4
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.1e-71 275.0 392 40.6
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 6.7e-69 265.8 437 40.5
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 3.1e-66 256.9 372 44.1
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 3.8e-64 250.0 277 52.7
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 2.0e-60 237.7 238 55.0
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 9.7e-60 235.3 198 64.6
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 3.5e-57 226.9 226 58.8
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 4.5e-57 226.5 238 51.7
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 1.6e-46 191.4 229 47.6
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 6.8e-45 186.0 199 52.3
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 2.8e-30 137.5 114 64.0
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 1.2e-28 132.1 132 56.1
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 4.6e-25 120.2 106 59.4
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 1.5e-23 115.2 94 60.6
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 3.4e-20 104.0 92 62.0
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 1.0e-16 92.4 70 65.7
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 2.3e-16 91.3 215 34.9
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 7.3e-15 86.3 152 44.1
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 5.4e-10 70.1 134 39.6
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 1.1e-07 62.4 63 55.6


User provided reference genes

Program Settings