Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G3439 Fragaria x ananassa HOM05D000032 ORTHO05D007441 1.2e-109 399.8 200 100.0
RcHm_v2.0_Chr1g0336991 Rosa chinensis HOM05D000032 ORTHO05D007441 2.5e-46 189.5 183 60.7
FvH4_4g36230 Fragaria vesca HOM05D000032 ORTHO05D007441 1.4e-44 183.7 183 57.9
FAN12G2435 Fragaria x ananassa HOM05D000032 ORTHO05D007441 1.4e-44 183.7 183 57.9
RcHm_v2.0_Chr4g0445981 Rosa chinensis HOM05D000032 ORTHO05D007441 1.8e-44 183.3 175 60.0
FvH4_5g34970 Fragaria vesca HOM05D000032 ORTHO05D007441 1.8e-41 173.3 210 51.9
Cfa020356 Carpinus fangiana HOM05D000032 ORTHO05D007441 4.1e-41 172.2 195 52.8
Haze_09666 Corylus avellana HOM05D000032 ORTHO05D007441 7.0e-41 171.4 195 52.8
MD13G1010800 Malus domestica HOM05D000032 ORTHO05D007441 1.0e-39 167.5 198 51.5
Prupe.1G342200 Prunus persica HOM05D000032 ORTHO05D007441 8.6e-39 164.5 180 54.4
FAN17G0218 Fragaria x ananassa HOM05D000188 ORTHO05D007441 1.1e-38 164.1 221 46.6
FAN07G1887 Fragaria x ananassa HOM05D000032 ORTHO05D007441 1.5e-38 163.7 221 46.6
FAN18G3985 Fragaria x ananassa HOM05D000032 ORTHO05D045959 5.6e-38 161.8 145 65.5
CiPaw.12G129200 Carya illinoinensis HOM05D000032 ORTHO05D007441 1.0e-36 157.5 182 52.2
QL08p010553 Quercus lobata HOM05D000032 ORTHO05D007441 6.8e-36 154.8 182 51.1
Sabra16G0289300 Salix brachista HOM05D000032 ORTHO05D007441 1.2e-35 154.1 182 51.1
Potri.001G423300 Populus trichocarpa HOM05D000032 ORTHO05D007441 2.6e-35 152.9 182 51.1
Psat2g012920 Pisum sativum HOM05D000032 ORTHO05D007441 5.8e-35 151.8 173 51.4
Cpa.g.sc97.12 Carica papaya HOM05D000032 ORTHO05D007441 2.9e-34 149.4 175 52.6
FvH4_5g33400 Fragaria vesca HOM05D000032 ORTHO05D045959 2.9e-34 149.4 82 92.7
Medtr5g092560 Medicago truncatula HOM05D000032 ORTHO05D007441 2.9e-34 149.4 173 53.2
Manes.03G128600 Manihot esculenta HOM05D000032 ORTHO05D007441 3.7e-34 149.1 191 49.7
Thecc.07G039000 Theobroma cacao HOM05D000032 ORTHO05D007441 4.9e-34 148.7 163 54.0
Glyma.02G290500 Glycine max HOM05D000032 ORTHO05D007441 6.4e-34 148.3 173 50.9
vmacro11728 Vaccinium macrocarpon HOM05D000032 ORTHO05D007441 6.4e-34 148.3 192 49.0
Gohir.D05G369000 Gossypium hirsutum HOM05D000032 ORTHO05D007441 1.1e-33 147.5 183 50.3
Dinv22268 Davidia involucrata HOM05D000032 ORTHO05D007441 1.4e-33 147.1 185 50.3
Gorai.009G437700 Gossypium raimondii HOM05D000032 ORTHO05D007441 1.4e-33 147.1 179 50.3
MELO3C025387.2 Cucumis melo HOM05D000032 ORTHO05D007441 1.8e-33 146.7 182 50.0
LjContig00272g0014609 Lotus japonicus HOM05D000032 ORTHO05D007441 1.8e-33 146.7 179 49.2
VMungo0647G0456 Vigna mungo HOM05D000032 ORTHO05D007441 1.8e-33 146.7 173 49.7
TPR.G1177 Trifolium pratense HOM05D000032 ORTHO05D007441 4.1e-33 145.6 166 53.6
Gohir.A04G017200 Gossypium hirsutum HOM05D000032 ORTHO05D007441 5.4e-33 145.2 183 49.7
Atru.chr2.3343 Acer truncatum HOM05D000032 ORTHO05D007441 7.0e-33 144.8 172 51.2
DCAR_010055 Daucus carota HOM05D000032 ORTHO05D007441 9.2e-33 144.4 174 51.7
TPR.G18801 Trifolium pratense HOM05D000032 ORTHO05D007441 1.6e-32 143.7 174 51.7
CsaV3_3G005200 Cucumis sativus L. HOM05D000032 ORTHO05D007441 2.7e-32 142.9 182 48.4
Medtr4g068990 Medicago truncatula HOM05D000032 ORTHO05D007441 2.7e-32 142.9 174 50.0
Phvul.008G267500 Phaseolus vulgaris HOM05D000032 ORTHO05D007441 2.7e-32 142.9 173 49.7
Rhsim06G0216500 Rhododendron simsii HOM05D000032 ORTHO05D007441 3.5e-32 142.5 207 44.9
TAR627G1048 Trochodendron aralioides HOM05D000032 ORTHO05D007441 4.6e-32 142.1 149 53.7
Cc05_g13750 Coffea canephora HOM05D000032 ORTHO05D007441 6.0e-32 141.7 173 49.7
Ca_06315_v3 Cicer arietinum L. HOM05D000032 ORTHO05D007441 7.8e-32 141.4 200 46.0
GSVIVG01037636001 Vitis vinifera HOM05D000032 ORTHO05D007441 7.8e-32 141.4 166 50.0
Duzib213G0943 Durio zibethinus HOM05D000032 ORTHO05D007441 1.0e-31 141.0 163 54.0
Lalb_Chr04g0248461 Lupinus albus HOM05D000032 ORTHO05D007441 1.7e-31 140.2 165 49.7
Hma1.2p1_1162F.1_g262650 Hydrangea macrophylla HOM05D000032 ORTHO05D007441 2.3e-31 139.8 182 46.7
CAN.G337.125 Capsicum annuum HOM05D000032 ORTHO05D007441 3.0e-31 139.4 173 49.1
Solyc07g064520.3 Solanum lycopersicum HOM05D000032 ORTHO05D007441 3.0e-31 139.4 166 50.0
Ciclev10010384m.g Citrus clementina HOM05D000032 ORTHO05D007441 5.0e-31 138.7 182 48.4
Eucgr.F00771 Eucalyptus grandis HOM05D000032 ORTHO05D007441 5.0e-31 138.7 145 57.2
Hma1.2p1_1162F.1_g262645 Hydrangea macrophylla HOM05D000032 ORTHO05D007441 5.0e-31 138.7 181 47.0
PGSC0003DMG400022219 Solanum tuberosum HOM05D000032 ORTHO05D007441 5.0e-31 138.7 166 49.4
Aqoxy1G03242 Aquilegia oxysepala HOM05D000032 ORTHO05D007441 6.6e-31 138.3 164 49.4
Sopen07g032720 Solanum pennellii HOM05D000032 ORTHO05D007441 6.6e-31 138.3 166 49.4
CSS0024745 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D007441 8.6e-31 137.9 184 47.3
Peaxi162Scf00673g00228 Petunia axillaris HOM05D000032 ORTHO05D007441 8.6e-31 137.9 166 50.0
ClCG10G005470 Citrullus lanatus HOM05D000032 ORTHO05D007441 1.1e-30 137.5 145 54.5
arahy.Tifrunner.gnm1.ann1.XQ7HNC Arachis hypogaea HOM05D000032 ORTHO05D007441 1.5e-30 137.1 173 48.0
Glyma.14G024300 Glycine max HOM05D000032 ORTHO05D007441 1.5e-30 137.1 173 49.1
FAN07G0031 Fragaria x ananassa HOM05D000032 ORTHO05D007441 2.5e-30 136.3 152 55.3
COL.COLO4_09654 Corchorus olitorius HOM05D000032 ORTHO05D007441 3.3e-30 136.0 163 50.9
TWI38G1159 Tripterygium wilfordii HOM05D000032 ORTHO05D007441 4.3e-30 135.6 179 45.3
PGR083G2405 Punica granatum HOM05D000032 ORTHO05D007441 7.3e-30 134.8 187 45.5
Sed0021087 Sechium edule HOM05D000032 ORTHO05D007441 9.5e-30 134.4 182 46.7
MSTRG.6912 Avicennia marina HOM05D000032 ORTHO05D007441 1.6e-29 133.7 186 46.2
THA.LOC104821853 Tarenaya hassleriana HOM05D000032 ORTHO05D007441 2.1e-29 133.3 166 50.0
SGA_v2.0_scaffold8G04309 Striga asiatica HOM05D000032 ORTHO05D007441 4.7e-29 132.1 180 45.0
Thhalv10012775m.g Eutrema salsugineum HOM05D000032 ORTHO05D007441 8.0e-29 131.3 165 47.9
Ah.09g225440 Amaranthus hybridus HOM05D000032 ORTHO05D007441 1.1e-28 131.0 184 45.1
AUR62020457 Chenopodium quinoa HOM05D000032 ORTHO05D007441 1.1e-28 131.0 183 43.7
arahy.Tifrunner.gnm1.ann1.EKQL3Q Arachis hypogaea HOM05D000032 ORTHO05D007441 1.4e-28 130.6 177 46.3
EL10Ac4g07816 Beta vulgaris HOM05D000032 ORTHO05D007441 1.4e-28 130.6 182 44.5
AL8G30380 Arabidopsis lyrata HOM05D000032 ORTHO05D007441 1.8e-28 130.2 162 47.5
Ah.06g186330 Amaranthus hybridus HOM05D000032 ORTHO05D007441 2.3e-28 129.8 184 44.0
AUR62015758 Chenopodium quinoa HOM05D000032 ORTHO05D007441 3.1e-28 129.4 197 41.1
HanXRQChr11g0336211 Helianthus annuus HOM05D000032 ORTHO05D007441 3.1e-28 129.4 162 48.8
Lsat_1_v5_gn_7_108660 Lactuca sativa HOM05D000032 ORTHO05D007441 3.1e-28 129.4 179 46.4
Aa31LG3G10840 Aethionema arabicum HOM05D000032 ORTHO05D007441 4.0e-28 129.0 161 48.4
MD08G1022200 Malus domestica HOM05D000032 ORTHO05D007441 4.0e-28 129.0 177 47.5
Sc03g0008630 Simmondsia chinensis HOM05D000032 ORTHO05D007441 4.0e-28 129.0 187 42.8
SHI26623 Sapria himalayana HOM05D000032 ORTHO05D007441 6.8e-28 128.3 193 44.0
BcaC04g20287 Brassica carinata HOM05D000032 ORTHO05D007441 8.9e-28 127.9 166 45.8
A10p12230 Brassica napus HOM05D000032 ORTHO05D007441 8.9e-28 127.9 166 45.8
C09p45450 Brassica napus HOM05D000032 ORTHO05D007441 8.9e-28 127.9 166 45.8
BolC9t57414H Brassica oleracea HOM05D000032 ORTHO05D007441 8.9e-28 127.9 166 45.8
BraA10t43319Z Brassica rapa HOM05D000032 ORTHO05D007441 8.9e-28 127.9 166 45.8
AT5G54910 Arabidopsis thaliana HOM05D000032 ORTHO05D007441 1.5e-27 127.1 162 46.9
BcaB08g35858 Brassica carinata HOM05D000032 ORTHO05D007441 1.5e-27 127.1 168 46.4
ECA236G4306 Erigeron canadensis HOM05D000032 ORTHO05D007441 1.5e-27 127.1 199 42.7
Carub.0008s1521 Capsella rubella HOM05D000032 ORTHO05D007441 2.6e-27 126.3 174 44.8
Nn1g03552 Nelumbo nucifera HOM05D000032 ORTHO05D007441 2.6e-27 126.3 180 43.9
Migut.M01772 Erythranthe guttata HOM05D000032 ORTHO05D007441 3.4e-27 125.9 167 46.1
Oeu042933.1 Olea europaea HOM05D000032 ORTHO05D007441 4.4e-27 125.6 160 48.1
CANSAT01G2717 Cannabis sativa HOM05D000032 ORTHO05D007441 5.8e-27 125.2 160 46.9
Lj8A169T91 Lonicera japonica HOM05D000032 ORTHO05D007441 7.5e-27 124.8 193 40.4
MD15G1026900 Malus domestica HOM05D000032 ORTHO05D007441 3.7e-26 122.5 167 46.1
ECA246G3907 Erigeron canadensis HOM05D000032 ORTHO05D007441 5.4e-25 118.6 155 45.2
MBI14_g23482_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D007441 7.8e-24 114.8 168 45.8
CDE10G0476 Ceratophyllum demersum HOM05D000032 ORTHO05D007441 8.6e-23 111.3 171 40.9
unitig_8.g4579 Utricularia gibba HOM05D000032 ORTHO05D007441 8.6e-23 111.3 214 39.3
PSO541G1348 Papaver somniferum HOM05D000032 ORTHO05D007441 1.1e-22 110.9 164 45.7
PSO675G8235 Papaver somniferum HOM05D000032 ORTHO05D007441 1.1e-22 110.9 164 45.7
Lj2C589G11 Lonicera japonica HOM05D000032 ORTHO05D007441 1.5e-22 110.5 183 38.8
ATR0752G230 Amborella trichopoda HOM05D000032 ORTHO05D007441 1.9e-22 110.2 190 40.0
Actinidia36942 Actinidia chinensis HOM05D000032 ORTHO05D007441 8.1e-21 104.8 149 44.3
HPP92_000854 Vanilla planifolia HOM05D000032 ORTHO05D007441 1.4e-20 104.0 207 36.2
AagrBONN_evm.TU.Sc2ySwM_344.2439 Anthoceros agrestis HOM05D000032 ORTHO05D007441 8.9e-20 101.3 137 46.7
CARHR268250 Cardamine hirsuta HOM05D000032 ORTHO05D007441 7.5e-19 98.2 161 36.6
Ah.09g225420 Amaranthus hybridus HOM05D000032 ORTHO05D007441 4.9e-18 95.5 196 34.7
Mapoly0008s0193 Marchantia polymorpha HOM05D000032 ORTHO05D007441 6.4e-18 95.1 160 37.5
CBR_g38380 Chara braunii HOM05D000032 ORTHO05D007441 1.4e-17 94.0 137 43.8
Pp3c4_14810 Physcomitrium patens HOM05D000032 ORTHO05D007441 1.9e-17 93.6 173 38.7
SMO144G0208 Selaginella moellendorffii HOM05D000032 ORTHO05D007441 1.9e-17 93.6 137 43.1
Cre03.g156150 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D007441 1.2e-13 80.9 156 35.3
Sp6g16880 Schrenkiella parvula HOM05D000032 ORTHO05D007441 1.1e-12 77.8 138 39.1
CDE10G0318 Ceratophyllum demersum HOM05D000032 ORTHO05D007441 3.1e-12 76.3 156 33.3
Lj2A576G22 Lonicera japonica HOM05D000032 ORTHO05D000002 5.2e-12 75.5 130 36.2
Os07g0517000 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D007441 8.9e-12 74.7 142 36.6
Zm00001eb106050 Zea mays HOM05D000032 ORTHO05D007441 2.0e-11 73.6 190 32.6
Cfa025493 Carpinus fangiana HOM05D000032 ORTHO05D007441 3.4e-11 72.8 138 35.5
MCO16G569 Micromonas commoda HOM05D000032 ORTHO05D007441 7.6e-11 71.6 160 34.4
SMO145G0268 Selaginella moellendorffii HOM05D000032 ORTHO05D007441 7.6e-11 71.6 187 30.5


User provided reference genes

Program Settings