Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.3e-85 318.9 169 100.0
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.8e-83 312.0 169 97.6
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 6.3e-83 310.8 169 97.6
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 5.3e-82 307.8 169 97.0
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 2.9e-72 275.4 152 97.4
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 2.3e-61 239.2 158 86.7
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 4.7e-46 188.3 157 73.9
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.7e-40 169.9 158 65.2
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 1.7e-40 169.9 158 65.8
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 5.0e-40 168.3 158 68.4
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 4.2e-39 165.2 157 65.6
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 3.6e-38 162.2 156 61.5
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 1.0e-37 160.6 158 61.4
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 6.8e-37 157.9 153 62.1
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 8.9e-37 157.5 156 59.6
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 8.9e-37 157.5 162 60.5
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 2.6e-36 156.0 170 58.2
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 3.4e-36 155.6 160 58.8
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 3.7e-35 152.1 157 58.6
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 6.3e-35 151.4 154 59.7
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 6.3e-35 151.4 154 59.7
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 8.3e-35 151.0 158 60.8
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 1.1e-34 150.6 158 63.3
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.4e-34 150.2 159 60.4
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 1.8e-34 149.8 143 63.6
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 2.4e-34 149.4 158 58.2
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 3.1e-34 149.1 144 64.6
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 9.2e-34 147.5 154 61.7
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 9.2e-34 147.5 161 56.5
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 1.2e-33 147.1 152 58.6
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 1.2e-33 147.1 175 52.0
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 2.0e-33 146.4 154 58.4
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 3.5e-33 145.6 170 54.7
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 3.5e-33 145.6 154 57.1
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 5.9e-33 144.8 156 59.6
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 5.9e-33 144.8 156 60.3
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 7.8e-33 144.4 154 57.1
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 1.0e-32 144.1 156 59.0
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 1.3e-32 143.7 154 57.1
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 1.7e-32 143.3 157 56.7
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 2.3e-32 142.9 158 57.6
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.3e-32 142.9 154 59.7
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 2.3e-32 142.9 155 58.1
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 2.9e-32 142.5 157 58.6
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 6.6e-32 141.4 144 61.1
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 1.5e-31 140.2 161 56.5
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 1.5e-31 140.2 142 59.9
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 7.3e-31 137.9 154 56.5
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 9.5e-31 137.5 155 57.4
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 1.6e-30 136.7 160 55.6
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 2.1e-30 136.3 154 55.8
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 2.1e-30 136.3 156 53.8
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 2.1e-30 136.3 156 53.8
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 2.8e-30 136.0 186 50.5
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 3.1e-29 132.5 189 48.1
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 4.0e-29 132.1 159 52.2
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 5.2e-29 131.7 154 53.9
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 8.9e-29 131.0 156 53.2
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 8.9e-29 131.0 156 53.2
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.5e-28 130.2 157 54.8
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 1.5e-28 130.2 134 58.2
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 2.0e-28 129.8 154 53.9
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 3.4e-28 129.0 162 54.9
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 4.4e-28 128.6 117 65.8
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 4.4e-28 128.6 142 54.2
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 5.8e-28 128.3 159 54.7
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 7.5e-28 127.9 152 53.3
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 2.2e-27 126.3 142 53.5
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 2.2e-27 126.3 138 55.1
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 3.7e-27 125.6 156 52.6
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 4.9e-27 125.2 144 52.1
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 2.4e-26 122.9 148 56.8
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 5.4e-26 121.7 160 50.6
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 7.0e-26 121.3 172 47.7
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 7.0e-26 121.3 141 53.9
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 1.2e-25 120.6 154 53.9
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.6e-25 120.2 144 52.8
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 3.5e-25 119.0 155 51.0
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 3.5e-25 119.0 159 50.3
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 4.6e-25 118.6 163 50.3
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 4.6e-25 118.6 137 54.0
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 6.0e-25 118.2 154 48.7
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 7.8e-25 117.9 134 56.0
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 7.8e-25 117.9 134 56.0
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 7.8e-25 117.9 149 51.0
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.0e-24 117.5 140 53.6
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 3.0e-24 115.9 143 51.7
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 3.9e-24 115.5 148 52.0
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 6.6e-24 114.8 150 52.7
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 1.1e-23 114.0 116 60.3
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 1.5e-23 113.6 136 49.3
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.9e-23 113.2 153 49.0
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 3.3e-23 112.5 139 54.0
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 1.2e-22 110.5 170 47.1
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 1.6e-22 110.2 165 45.5
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 2.8e-22 109.4 139 49.6
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 6.2e-22 108.2 145 50.3
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 8.0e-22 107.8 154 46.1
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 8.0e-22 107.8 171 46.2
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 3.1e-21 105.9 151 48.3
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 4.0e-21 105.5 116 56.0
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 5.2e-21 105.1 146 49.3
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 2.0e-20 103.2 171 46.8
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 3.4e-20 102.4 148 49.3
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 4.4e-20 102.1 148 48.0
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 7.5e-20 101.3 155 47.1
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 1.7e-19 100.1 116 54.3
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 6.4e-19 98.2 142 43.0
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 8.3e-19 97.8 175 44.6
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.9e-18 96.7 104 59.6
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 4.1e-18 95.5 98 56.1
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 9.2e-18 94.4 113 51.3
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 4.6e-17 92.0 113 50.4
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 4.6e-17 92.0 152 44.7
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 6.0e-17 91.7 193 38.9
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.0e-16 90.9 109 53.2
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 1.0e-16 90.9 149 43.6
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.3e-16 90.5 98 56.1
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 8.6e-16 87.8 135 47.4
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 5.6e-15 85.1 99 56.6
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 2.1e-14 83.2 101 52.5
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 2.1e-14 83.2 151 41.1
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 8.1e-14 81.3 147 39.5
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 1.1e-13 80.9 127 44.1
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 1.4e-13 80.5 67 62.7
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.8e-13 80.1 96 52.1
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 6.8e-13 78.2 74 60.8
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 6.8e-13 78.2 83 62.7
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 6.8e-13 78.2 88 50.0
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 4.4e-12 75.5 150 38.0
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 1.7e-11 73.6 87 58.6
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 1.2e-09 67.4 158 33.5
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 3.5e-09 65.9 100 43.0
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 7.8e-09 64.7 92 48.9
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 1.0e-08 64.3 60 66.7
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.3e-08 63.2 75 52.0
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 5.1e-08 62.0 73 50.7
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 8.6e-08 61.2 58 62.1
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 8.6e-08 61.2 58 62.1
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.5e-07 59.7 58 60.3
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.5e-07 59.7 56 62.5
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 3.3e-07 59.3 59 62.7
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 5.6e-07 58.5 56 57.1
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 5.6e-07 58.5 133 36.8


User provided reference genes

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