Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 0.0e+00 1137.1 591 100.0
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 0.0e+00 1110.5 591 98.3
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 0.0e+00 1102.0 591 97.6
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 0.0e+00 1097.4 591 97.3
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 0.0e+00 1089.7 608 92.8
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 1.3e-289 999.2 597 89.9
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 3.2e-243 845.1 595 75.5
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 3.7e-223 778.5 602 70.3
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 1.2e-218 763.5 603 69.5
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 2.0e-216 756.1 607 67.9
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 2.8e-215 752.3 618 67.8
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 2.9e-212 742.3 606 68.2
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 2.1e-210 736.1 606 68.5
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 2.8e-210 735.7 591 66.5
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 6.1e-210 734.6 605 67.8
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 1.4e-209 733.4 595 69.4
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.8e-209 733.0 548 70.4
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 6.3e-207 724.5 597 66.3
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 1.8e-206 723.0 621 64.1
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 2.0e-205 719.5 610 66.1
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 1.9e-203 713.0 577 66.6
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 9.5e-203 710.7 610 65.7
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 6.2e-202 708.0 612 64.9
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 2.3e-201 706.1 602 65.8
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 1.2e-200 703.7 614 65.6
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 2.0e-200 703.0 602 65.8
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.4e-200 702.2 618 64.2
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.7e-199 699.9 417 82.3
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 3.7e-199 698.7 609 63.9
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 4.9e-199 698.4 550 68.5
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 1.1e-198 697.2 555 66.8
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 3.2e-198 695.7 547 68.4
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 4.1e-198 695.3 539 69.4
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 4.1e-198 695.3 603 65.0
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 9.2e-198 694.1 603 63.2
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.7e-197 692.6 620 63.7
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 4.6e-197 691.8 602 64.1
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 1.7e-196 689.9 524 69.3
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 2.3e-196 689.5 532 68.0
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 5.0e-196 688.3 545 67.3
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 3.3e-195 685.6 531 68.2
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 7.3e-195 684.5 638 62.5
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 9.5e-195 684.1 611 63.5
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 1.2e-194 683.7 611 63.2
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 2.1e-194 682.9 604 64.1
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 2.1e-194 682.9 595 63.9
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 4.7e-194 681.8 599 62.9
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 6.2e-194 681.4 605 64.5
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 8.1e-194 681.0 418 80.4
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 1.4e-193 680.2 599 64.1
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 8.9e-193 677.6 415 80.0
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 4.4e-192 675.2 631 59.7
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 5.8e-192 674.9 599 61.9
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 1.3e-191 673.7 597 64.0
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 1.7e-191 673.3 448 75.9
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 3.7e-191 672.2 459 74.3
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 3.7e-191 672.2 618 62.3
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 4.9e-191 671.8 601 61.4
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 1.9e-190 669.8 630 61.0
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.2e-190 669.1 576 64.9
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 9.2e-190 667.5 576 66.5
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 4.6e-189 665.2 564 64.0
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 6.0e-189 664.8 618 63.6
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 1.7e-188 663.3 563 65.5
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 2.3e-188 662.9 592 62.3
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 5.1e-188 661.8 611 62.5
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 8.6e-188 661.0 605 62.5
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 1.5e-187 660.2 611 62.0
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 1.6e-186 656.8 607 61.3
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 2.1e-186 656.4 599 61.8
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 6.2e-186 654.8 376 95.7
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 6.2e-186 654.8 412 79.4
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 1.8e-185 653.3 601 61.4
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 4.0e-185 652.1 609 62.4
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 1.5e-184 650.2 413 77.7
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 2.0e-184 649.8 594 63.0
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 4.4e-184 648.7 416 76.7
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 5.8e-184 648.3 412 78.9
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 7.6e-184 647.9 556 63.1
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.3e-183 647.1 602 60.0
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.7e-183 646.7 410 77.6
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 2.2e-183 646.4 614 59.4
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 2.2e-183 646.4 415 78.1
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 6.4e-183 644.8 607 61.9
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.4e-182 643.7 613 61.5
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 5.4e-182 641.7 622 59.6
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 9.2e-182 641.0 602 60.1
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.6e-181 640.2 603 62.4
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 2.1e-181 639.8 618 60.0
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 6.0e-181 638.3 595 61.3
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 6.0e-181 638.3 602 59.3
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.0e-180 637.5 535 64.1
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 1.7e-180 636.7 579 60.1
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 2.3e-180 636.3 634 59.3
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 6.6e-180 634.8 540 62.8
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 8.6e-180 634.4 577 62.0
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 2.5e-179 632.9 409 78.2
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 3.3e-179 632.5 612 59.2
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 3.3e-179 632.5 602 59.3
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 4.3e-179 632.1 639 57.9
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 4.3e-179 632.1 460 71.5
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.2e-178 630.6 501 65.7
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.2e-178 630.6 503 65.8
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 1.2e-178 630.6 412 75.7
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 1.6e-178 630.2 486 67.3
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 8.1e-178 627.9 575 61.2
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 4.0e-177 625.5 608 58.4
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 4.0e-177 625.5 566 61.8
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 5.2e-177 625.2 410 76.1
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 2.6e-176 622.9 599 58.1
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 5.8e-176 621.7 569 61.7
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 5.8e-176 621.7 565 61.8
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 7.6e-176 621.3 565 61.6
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 1.3e-175 620.5 565 61.6
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 1.7e-175 620.2 565 61.2
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 1.9e-174 616.7 562 62.8
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 2.4e-174 616.3 483 65.8
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 7.1e-174 614.8 563 61.3
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 9.3e-174 614.4 586 59.4
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 2.1e-173 613.2 569 58.5
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 6.0e-173 611.7 413 74.3
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 6.0e-173 611.7 412 74.3
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 6.0e-173 611.7 413 74.3
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 6.0e-173 611.7 413 74.3
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 6.0e-173 611.7 412 74.3
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 1.7e-172 610.1 623 57.9
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 1.7e-172 610.1 485 66.4
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 3.3e-171 605.9 608 58.2
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 4.3e-171 605.5 569 60.1
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 2.8e-170 602.8 587 58.8
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 6.9e-169 598.2 587 58.9
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 3.4e-168 595.9 609 58.5
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 1.1e-166 590.9 601 57.1
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.5e-160 570.5 362 78.7
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 2.6e-160 569.7 493 63.7
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 6.4e-159 565.1 469 63.8
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 7.4e-155 551.6 604 55.8
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.0e-140 504.6 409 63.3
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 2.5e-139 500.0 369 68.3
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 1.8e-137 493.8 350 68.9
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 1.2e-133 481.1 405 61.2
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 1.5e-131 474.2 377 66.6
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 6.9e-129 465.3 347 66.6
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 2.2e-122 443.7 324 66.4
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 1.4e-97 361.3 209 80.4
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 1.7e-95 354.4 390 49.5
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 8.9e-92 342.0 197 80.7
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 4.9e-82 309.7 180 80.0
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 6.4e-74 282.7 193 73.6
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.1e-73 282.0 159 82.4
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 4.1e-73 280.0 156 83.3
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 4.1e-73 280.0 156 83.3
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 7.8e-64 249.2 438 39.5
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 6.2e-61 239.6 363 37.5
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 6.0e-56 223.0 302 39.7
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 2.9e-50 204.1 216 56.5
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 5.1e-47 193.4 263 40.3
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 2.0e-43 181.4 128 72.7
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 2.4e-41 174.5 109 76.1
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 5.3e-36 156.8 186 47.8
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 5.8e-35 153.3 110 66.4
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 7.1e-33 146.4 88 76.1
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 1.5e-30 138.7 210 36.7
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 1.3e-29 135.6 83 73.5
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 4.8e-29 133.7 113 61.1
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 1.1e-28 132.5 128 56.2
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 1.5e-27 128.6 83 68.7
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 1.0e-26 125.9 99 66.7
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 1.6e-21 108.6 120 51.7
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 1.4e-15 89.0 98 54.1
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 3.7e-13 80.9 243 35.0
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 5.3e-12 77.0 90 52.2
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 1.2e-11 75.9 180 32.8
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 2.6e-11 74.7 111 39.6
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 4.5e-11 73.9 48 70.8
Rhsim01G0139900 Rhododendron simsii HOM05D002321 ORTHO05D006445 2.0e-06 58.5 39 74.4
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 3.3e-06 57.8 32 75.0


User provided reference genes

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