Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.2e-95 353.2 178 100.0
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.9e-82 309.3 203 80.8
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 5.6e-74 281.2 179 82.7
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 9.9e-71 270.4 179 74.9
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 1.8e-64 249.6 179 76.0
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 1.8e-64 249.6 180 73.9
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 2.0e-63 246.1 178 70.2
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 4.2e-61 238.4 174 74.7
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 4.2e-61 238.4 178 69.1
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 1.7e-59 233.0 182 68.1
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 3.0e-59 232.3 176 65.9
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 8.7e-59 230.7 184 71.7
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 3.3e-58 228.8 176 64.8
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 4.3e-58 228.4 176 64.8
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 2.4e-56 222.6 177 64.4
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 5.3e-56 221.5 177 63.8
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 9.0e-56 220.7 178 64.6
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 1.2e-55 220.3 177 62.7
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 1.5e-55 219.9 178 64.0
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 2.0e-55 219.5 177 62.1
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 2.6e-55 219.2 255 49.0
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 4.5e-55 218.4 178 64.0
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 5.8e-55 218.0 177 63.3
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 5.8e-55 218.0 175 62.3
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 5.8e-55 218.0 174 63.8
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 5.8e-55 218.0 178 61.8
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 7.6e-55 217.6 177 62.1
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 7.6e-55 217.6 177 65.0
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 7.6e-55 217.6 178 60.7
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 9.9e-55 217.2 177 62.1
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 9.9e-55 217.2 177 62.1
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 9.9e-55 217.2 178 61.8
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 2.2e-54 216.1 177 66.7
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 1.9e-53 213.0 178 62.9
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 2.4e-53 212.6 177 61.6
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 3.2e-53 212.2 174 63.8
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 4.2e-53 211.8 172 65.1
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 4.2e-53 211.8 177 59.3
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 4.2e-53 211.8 178 61.8
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 4.2e-53 211.8 181 61.9
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 5.4e-53 211.5 178 60.1
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 7.1e-53 211.1 174 63.2
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 9.3e-53 210.7 178 62.9
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 9.3e-53 210.7 177 60.5
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 1.2e-52 210.3 177 60.5
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 1.2e-52 210.3 176 61.4
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 3.5e-52 208.8 179 60.9
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 3.5e-52 208.8 175 60.6
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 3.5e-52 208.8 175 60.6
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 4.6e-52 208.4 173 64.2
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 1.3e-51 206.8 179 58.7
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 3.0e-51 205.7 176 60.8
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 3.9e-51 205.3 175 60.0
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 6.7e-51 204.5 174 58.0
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 1.1e-50 203.8 174 60.9
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 1.1e-50 203.8 174 61.5
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 1.5e-50 203.4 176 58.0
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 1.5e-50 203.4 178 60.1
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 2.5e-50 202.6 176 59.1
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 2.5e-50 202.6 176 59.1
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 5.6e-50 201.4 174 59.8
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 9.6e-50 200.7 179 58.7
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 9.6e-50 200.7 176 60.8
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 9.6e-50 200.7 176 60.2
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 1.6e-49 199.9 176 60.2
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 2.1e-49 199.5 179 59.8
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 2.1e-49 199.5 179 59.2
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 2.8e-49 199.1 151 63.6
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 3.7e-49 198.7 176 59.1
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 3.7e-49 198.7 176 58.0
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 4.8e-49 198.4 175 60.0
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 8.1e-49 197.6 176 58.0
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 1.4e-48 196.8 179 54.7
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 1.8e-48 196.4 178 58.4
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 2.4e-48 196.1 175 58.9
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 3.1e-48 195.7 176 57.4
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 3.1e-48 195.7 174 59.8
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 6.9e-48 194.5 176 59.1
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 9.0e-48 194.1 174 59.8
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 1.2e-47 193.7 179 57.0
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.2e-47 193.7 176 56.8
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 2.6e-47 192.6 179 58.1
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 5.8e-47 191.4 176 57.4
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 5.8e-47 191.4 176 58.0
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 2.2e-46 189.5 174 58.0
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 2.2e-46 189.5 176 56.8
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 6.4e-46 188.0 174 56.3
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 8.4e-46 187.6 175 55.4
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 3.2e-45 185.7 175 56.0
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 5.5e-45 184.9 193 50.8
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 2.7e-44 182.6 108 80.6
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 4.6e-44 181.8 174 55.2
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 5.1e-43 178.3 123 72.4
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 2.5e-42 176.0 155 58.7
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 7.4e-42 174.5 138 61.6
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 1.6e-41 173.3 173 52.0
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 1.6e-41 173.3 204 47.1
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 8.2e-41 171.0 175 52.6
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 9.0e-40 167.5 176 50.0
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 2.2e-38 162.9 145 58.6
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 2.2e-38 162.9 120 66.7
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.4e-37 160.2 127 63.0
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 2.5e-37 159.5 195 48.7
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 2.5e-37 159.5 177 51.4
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 7.1e-37 157.9 138 58.7
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.2e-36 157.1 129 58.1
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 2.1e-36 156.4 140 58.6
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 2.7e-36 156.0 138 55.1
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.0e-35 154.1 214 43.9
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 3.7e-33 145.6 84 78.6
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 3.7e-33 145.6 138 55.8
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 4.8e-33 145.2 167 48.5
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 8.2e-33 144.4 176 45.5
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 6.9e-32 141.4 89 75.3
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 2.6e-31 139.4 89 74.2
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 3.4e-31 139.0 88 75.0
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 3.8e-30 135.6 89 74.2
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.1e-29 134.0 165 46.7
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 2.1e-28 129.8 102 62.7
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 1.1e-26 124.0 118 51.7
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 5.0e-22 108.6 90 63.3
Haze_10727 Corylus avellana HOM05D006436 ORTHO05D008011 9.4e-13 77.8 59 67.8
RcHm_v2.0_Chr4g0394581 Rosa chinensis HOM05D004344 ORTHO05D006026 3.3e-10 69.3 51 68.6
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 3.5e-07 59.3 36 75.0
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 3.5e-07 59.3 36 75.0
SEGI_00674 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 4.5e-07 58.9 51 51.0
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.7e-06 57.0 36 72.2


User provided reference genes

Program Settings