Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G3374 Fragaria x ananassa HOM05D006116 ORTHO05D007795 9.0e-259 896.3 435 100.0
FAN04G0705 Fragaria x ananassa HOM05D006116 ORTHO05D007795 2.5e-253 878.2 435 97.7
FAN18G3779 Fragaria x ananassa HOM05D006116 ORTHO05D007795 2.8e-252 874.8 437 97.5
FvH4_5g20810 Fragaria vesca HOM05D006116 ORTHO05D007795 6.4e-249 863.6 437 96.1
RcHm_v2.0_Chr7g0207741 Rosa chinensis HOM05D006116 ORTHO05D007795 5.3e-211 737.6 440 84.3
Prupe.5G050800 Prunus persica HOM05D006116 ORTHO05D007795 1.8e-198 696.0 438 77.4
MD04G1057000 Malus domestica HOM05D006116 ORTHO05D007795 1.4e-190 669.8 440 75.7
COL.COLO4_06703 Corchorus olitorius HOM05D006116 ORTHO05D007795 8.3e-188 660.6 441 73.0
FAN13G0371 Fragaria x ananassa HOM05D006116 ORTHO05D007795 1.0e-185 653.7 331 96.7
Ciclev10020221m.g Citrus clementina HOM05D006116 ORTHO05D007795 1.5e-181 639.8 440 70.7
CSS0043999 Camellia sinensis var. sinensis HOM05D006116 ORTHO05D007795 1.7e-180 636.3 442 69.9
vmacro00376 Vaccinium macrocarpon HOM05D006116 ORTHO05D007795 3.0e-177 625.5 442 69.0
Rhsim11G0056500 Rhododendron simsii HOM05D006116 ORTHO05D007795 5.0e-177 624.8 441 68.5
Actinidia03408 Actinidia chinensis HOM05D006116 ORTHO05D007795 1.8e-174 616.3 440 68.4
PGR042G3339 Punica granatum HOM05D006116 ORTHO05D007795 1.5e-173 613.2 452 68.1
CANSAT21G1244 Cannabis sativa HOM05D006116 ORTHO05D007795 1.4e-171 606.7 465 66.5
Nitab4.5_0006135g0020 Nicotiana tabacum HOM05D006116 ORTHO05D007795 3.5e-170 602.1 435 65.1
THA.LOC104813328 Tarenaya hassleriana HOM05D006116 ORTHO05D007795 3.9e-169 598.6 444 66.2
QL12p007972 Quercus lobata HOM05D006116 ORTHO05D007795 3.3e-168 595.5 456 66.4
PGSC0003DMG400001856 Solanum tuberosum HOM05D006116 ORTHO05D007795 3.3e-168 595.5 435 66.9
CSS0034154 Camellia sinensis var. sinensis HOM05D006116 ORTHO05D007795 5.6e-168 594.7 442 66.5
Hma1.2p1_0414F.1_g147510 Hydrangea macrophylla HOM05D006116 ORTHO05D007795 8.1e-167 590.9 442 67.9
CAN.G1445.8 Capsicum annuum HOM05D006116 ORTHO05D007795 2.3e-166 589.3 435 65.5
Medtr4g099100 Medicago truncatula HOM05D006116 ORTHO05D007795 5.2e-166 588.2 453 66.0
Nitab4.5_0001255g0040 Nicotiana tabacum HOM05D006116 ORTHO05D007795 5.2e-166 588.2 443 64.6
Gorai.008G230000 Gossypium raimondii HOM05D006116 ORTHO05D007795 6.8e-166 587.8 442 67.6
Gohir.A12G211900 Gossypium hirsutum HOM05D006116 ORTHO05D007795 4.4e-165 585.1 443 67.3
Duzib205G0680 Durio zibethinus HOM05D006116 ORTHO05D007795 7.5e-165 584.3 438 68.3
Oeu020145.1 Olea europaea HOM05D006116 ORTHO05D007795 4.9e-164 581.6 440 65.0
ClCG10G002040 Citrullus lanatus HOM05D006116 ORTHO05D007795 8.3e-164 580.9 437 66.8
HanXRQChr03g0087311 Helianthus annuus HOM05D006116 ORTHO05D007795 1.9e-163 579.7 436 65.8
Sopen08g026090 Solanum pennellii HOM05D006116 ORTHO05D007795 7.1e-163 577.8 434 64.7
GSVIVG01013271001 Vitis vinifera HOM05D006116 ORTHO05D007795 7.1e-163 577.8 447 65.1
CiPaw.11G085600 Carya illinoinensis HOM05D006116 ORTHO05D007795 1.2e-162 577.0 440 65.5
Thecc.03G237000 Theobroma cacao HOM05D006116 ORTHO05D007795 1.6e-162 576.6 440 66.8
Solyc08g077510.4 Solanum lycopersicum HOM05D006116 ORTHO05D007795 2.7e-162 575.9 434 64.7
arahy.Tifrunner.gnm1.ann1.L13TYF Arachis hypogaea HOM05D006116 ORTHO05D007795 3.0e-161 572.4 447 64.4
BolC7t45369H Brassica oleracea HOM05D006116 ORTHO05D007795 3.9e-161 572.0 443 66.8
TWI60G0034 Tripterygium wilfordii HOM05D006116 ORTHO05D007795 5.1e-161 571.6 435 67.6
Ca_22031_v3 Cicer arietinum L. HOM05D006116 ORTHO05D007795 8.6e-161 570.9 437 65.9
Potri.003G085600 Populus trichocarpa HOM05D006116 ORTHO05D007795 8.6e-161 570.9 438 65.8
arahy.Tifrunner.gnm1.ann1.F87Z6X Arachis hypogaea HOM05D006116 ORTHO05D007795 1.1e-160 570.5 447 64.2
CsaV3_3G002130 Cucumis sativus L. HOM05D006116 ORTHO05D007795 1.1e-160 570.5 437 65.2
Lj4g0012718 Lotus japonicus HOM05D006116 ORTHO05D007795 1.5e-160 570.1 450 64.4
C07p48610 Brassica napus HOM05D006116 ORTHO05D007795 1.9e-160 569.7 443 66.6
MELO3C013885.2 Cucumis melo HOM05D006116 ORTHO05D007795 2.5e-160 569.3 437 65.2
Glyma.17G150200 Glycine max HOM05D006116 ORTHO05D007795 5.6e-160 568.2 434 66.6
Lalb_Chr05g0220761 Lupinus albus HOM05D006116 ORTHO05D007795 5.6e-160 568.2 435 64.8
Nn1g00701 Nelumbo nucifera HOM05D006116 ORTHO05D007795 9.5e-160 567.4 442 64.5
ECA240G2524 Erigeron canadensis HOM05D006116 ORTHO05D007795 1.6e-159 566.6 436 65.1
Cc08_g01540 Coffea canephora HOM05D006116 ORTHO05D007795 1.8e-158 563.1 445 61.8
Peaxi162Scf00084g00117 Petunia axillaris HOM05D006116 ORTHO05D007795 3.4e-157 558.9 434 63.8
TPR.G11192 Trifolium pratense HOM05D006116 ORTHO05D007795 1.4e-155 553.5 445 63.4
Eucgr.E00329 Eucalyptus grandis HOM05D006116 ORTHO05D007795 2.1e-154 549.7 450 62.2
Aa31LG2G13210 Aethionema arabicum HOM05D006116 ORTHO05D007795 2.3e-153 546.2 412 67.2
PSO732G0356 Papaver somniferum HOM05D006116 ORTHO05D007795 6.6e-153 544.7 445 63.4
Manes.17G019700 Manihot esculenta HOM05D006116 ORTHO05D007795 1.9e-152 543.1 442 63.3
Phvul.003G227000 Phaseolus vulgaris HOM05D006116 ORTHO05D007795 2.5e-152 542.7 443 60.7
VMungo0251G0386 Vigna mungo HOM05D006116 ORTHO05D007795 1.3e-151 540.4 460 60.0
DCAR_008310 Daucus carota HOM05D006116 ORTHO05D007795 1.6e-151 540.0 453 60.3
BraA03t14121Z Brassica rapa HOM05D006116 ORTHO05D007795 1.5e-149 533.5 437 63.6
Lj8A287G22 Lonicera japonica HOM05D006116 ORTHO05D007795 5.8e-149 531.6 401 65.3
Aqoxy7G00869 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 9.9e-149 530.8 455 59.6
A03p50320 Brassica napus HOM05D006116 ORTHO05D007795 1.7e-148 530.0 442 62.9
Lsat_1_v5_gn_6_88480 Lactuca sativa HOM05D006116 ORTHO05D007795 1.9e-147 526.6 446 59.9
CARHR223700 Cardamine hirsuta HOM05D006116 ORTHO05D007795 2.7e-146 522.7 436 61.5
Lalb_Chr09g0329681 Lupinus albus HOM05D006116 ORTHO05D007795 4.6e-146 521.9 330 73.3
Ah.12g053810 Amaranthus hybridus HOM05D006116 ORTHO05D007795 1.3e-145 520.4 442 58.1
ClCG00G004790 Citrullus lanatus HOM05D006116 ORTHO05D007795 3.9e-145 518.8 437 62.0
AL7G37600 Arabidopsis lyrata HOM05D006116 ORTHO05D007795 6.6e-145 518.1 436 61.5
Sc07g0009020 Simmondsia chinensis HOM05D006116 ORTHO05D007795 8.7e-145 517.7 449 58.4
Gohir.D12G214400 Gossypium hirsutum HOM05D006116 ORTHO05D007795 2.5e-144 516.2 301 79.4
Sed0023369 Sechium edule HOM05D006116 ORTHO05D007795 3.3e-144 515.8 437 61.8
PSO675G1792 Papaver somniferum HOM05D006116 ORTHO05D007795 5.6e-144 515.0 443 61.9
Hund14464 Selenicereus undatus HOM05D006116 ORTHO05D007795 2.8e-143 512.7 450 57.6
Thhalv10025290m.g Eutrema salsugineum HOM05D006116 ORTHO05D007795 1.1e-142 510.8 435 61.4
Sp7g17070 Schrenkiella parvula HOM05D006116 ORTHO05D007795 1.8e-142 510.0 436 61.7
Migut.E00901 Erythranthe guttata HOM05D006116 ORTHO05D007795 2.6e-141 506.1 305 75.4
MSTRG.1960 Avicennia marina HOM05D006116 ORTHO05D007795 7.6e-141 504.6 438 59.4
ATR0829G115 Amborella trichopoda HOM05D006116 ORTHO05D007795 5.4e-139 498.4 446 59.2
unitig_21.g20374 Utricularia gibba HOM05D006116 ORTHO05D007795 7.1e-139 498.0 432 58.6
Os04g0542900 Oryza sativa ssp. japonica HOM05D006116 ORTHO05D007795 1.3e-137 493.8 466 56.0
Carub.0007s2428 Capsella rubella HOM05D006116 ORTHO05D007795 5.1e-137 491.9 441 58.5
SGA_v2.0_scaffold20G09247 Striga asiatica HOM05D006116 ORTHO05D007795 1.9e-136 490.0 498 51.0
EL10Ac5g12218 Beta vulgaris HOM05D006116 ORTHO05D007795 5.6e-136 488.4 509 51.1
Zm00001eb075030 Zea mays HOM05D006116 ORTHO05D007795 7.4e-136 488.0 474 54.9
AUR62018802 Chenopodium quinoa HOM05D006116 ORTHO05D007795 4.9e-132 475.3 406 57.9
AUR62007200 Chenopodium quinoa HOM05D006116 ORTHO05D007795 1.6e-127 460.3 300 69.0
TAR375G0725 Trochodendron aralioides HOM05D006116 ORTHO05D007795 2.8e-127 459.5 386 61.9
TAR375G0708 Trochodendron aralioides HOM05D006116 ORTHO05D007795 7.9e-122 441.4 370 61.6
SEGI_40490 Sequoiadendron giganteum HOM05D006116 ORTHO05D007795 3.9e-121 439.1 293 70.3
HPP92_020688 Vanilla planifolia HOM05D006116 ORTHO05D007795 6.9e-118 428.3 448 52.7
AagrBONN_evm.TU.Sc2ySwM_368.518 Anthoceros agrestis HOM05D006116 ORTHO05D007795 6.1e-114 415.2 443 50.1
CiPaw.12G058000 Carya illinoinensis HOM05D006116 ORTHO05D007795 3.7e-111 406.0 230 80.0
Psat4g077320 Pisum sativum HOM05D006116 ORTHO05D007795 4.8e-111 405.6 359 59.1
Pp3c14_16100 Physcomitrium patens HOM05D006116 ORTHO05D007795 4.2e-107 392.5 476 46.0
Pp3c14_16101 Physcomitrium patens HOM05D006116 ORTHO05D007795 4.2e-107 392.5 476 46.0
SMO356G0030 Selaginella moellendorffii HOM05D006116 ORTHO05D007795 2.1e-106 390.2 303 61.4
Mapoly0141s0023 Marchantia polymorpha HOM05D006116 ORTHO05D007795 2.7e-106 389.8 383 54.6
Pp3c2_10960 Physcomitrium patens HOM05D006116 ORTHO05D007795 4.4e-104 382.5 401 51.4
Zm00001eb313880 Zea mays HOM05D006116 ORTHO05D007795 2.2e-103 380.2 268 66.0
BcaC06g33529 Brassica carinata HOM05D006116 ORTHO05D007795 4.8e-103 379.0 358 57.3
Haze_08334 Corylus avellana HOM05D006116 ORTHO05D007795 9.1e-102 374.8 349 58.5
Migut.E00812 Erythranthe guttata HOM05D006116 ORTHO05D007795 1.2e-101 374.4 218 77.5
Zm00001eb091650 Zea mays HOM05D006116 ORTHO05D007795 4.4e-96 355.9 308 55.2
Zm00001eb319310 Zea mays HOM05D006116 ORTHO05D007795 5.5e-83 312.4 201 71.6
Dinv28896 Davidia involucrata HOM05D006116 ORTHO05D007795 6.8e-73 278.9 203 67.0
Zm00001eb129530 Zea mays HOM05D006116 ORTHO05D007795 4.9e-71 272.7 208 60.6
Zm00001eb391960 Zea mays HOM05D006116 ORTHO05D007795 4.9e-71 272.7 208 60.6
CBR_g27781 Chara braunii HOM05D006116 ORTHO05D007795 4.6e-69 266.2 264 48.1
Cre14.g631900 Chlamydomonas reinhardtii HOM05D006116 ORTHO05D007795 6.8e-65 252.3 278 42.1
Atru.chr9.1147 Acer truncatum HOM05D006116 ORTHO05D007795 9.5e-59 231.9 118 85.6
PSO732G0385 Papaver somniferum HOM05D006116 ORTHO05D007795 2.5e-51 207.2 254 49.2
Zm00001eb268110 Zea mays HOM05D006116 ORTHO05D007795 1.4e-46 191.4 192 50.0
Zm00001eb276710 Zea mays HOM05D006116 ORTHO05D007795 6.0e-37 159.5 134 54.5
Lsat_1_v5_gn_7_9401 Lactuca sativa HOM05D006116 ORTHO05D000290 3.0e-36 157.1 143 58.7
Ca_20974_v3 Cicer arietinum L. HOM05D006116 ORTHO05D007795 5.1e-36 156.4 117 62.4
EL10Ac5g12217 Beta vulgaris HOM05D006116 ORTHO05D007795 9.3e-30 135.6 78 71.8
TAR375G0859 Trochodendron aralioides HOM05D006116 ORTHO05D007795 3.5e-29 133.7 69 85.5
DCAR_005654 Daucus carota HOM05D006116 ORTHO05D007795 2.4e-22 110.9 68 72.1
CAN.G507.3 Capsicum annuum HOM05D006116 ORTHO05D007795 6.0e-21 106.3 74 62.2
CDE11G0087 Ceratophyllum demersum HOM05D006116 ORTHO05D007795 2.6e-16 90.9 52 76.9
TAR375G0706 Trochodendron aralioides HOM05D006116 ORTHO05D009946 8.4e-15 85.9 87 48.3
Atru.chr9.1146 Acer truncatum HOM05D006116 ORTHO05D007795 1.3e-12 78.6 103 48.5
Aqoxy6G01690 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 2.1e-10 71.2 120 30.8
CiPaw.12G058200 Carya illinoinensis HOM05D006116 ORTHO05D007795 2.8e-10 70.9 131 42.0
Aqoxy7G03532 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 3.4e-08 63.9 61 44.3
BolC8t48435H Brassica oleracea HOM05D006116 ORTHO05D007795 4.2e-06 57.0 39 61.5


User provided reference genes

Program Settings