Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.9e-213 745.0 382 100.0
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.3e-197 693.0 408 89.7
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 4.4e-193 677.9 415 87.0
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 1.3e-192 676.4 419 86.2
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 5.4e-191 671.0 427 84.8
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 2.0e-185 652.5 416 83.4
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.1e-182 642.5 419 82.8
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 1.1e-167 593.6 388 80.2
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 9.3e-159 563.9 418 71.1
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 5.6e-156 554.7 423 71.4
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 2.3e-141 506.1 404 65.6
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 1.1e-140 503.8 429 61.1
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 5.7e-140 501.5 408 62.7
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 5.3e-138 495.0 411 62.8
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 3.8e-136 488.8 415 64.8
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 2.1e-134 483.0 348 67.5
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 1.0e-133 480.7 411 61.6
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 5.1e-133 478.4 413 59.6
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 6.7e-133 478.0 411 60.6
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 1.9e-132 476.5 401 60.6
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 4.3e-132 475.3 423 59.3
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 1.6e-131 473.4 378 63.8
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 4.8e-131 471.9 404 60.9
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 6.3e-131 471.5 349 67.0
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 1.1e-130 470.7 321 72.0
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 5.3e-130 468.4 406 59.1
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 6.9e-130 468.0 414 59.4
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 1.2e-129 467.2 410 60.2
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 2.0e-129 466.5 401 60.1
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 4.5e-129 465.3 418 57.4
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 7.7e-129 464.5 418 57.4
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 7.7e-129 464.5 422 57.3
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 1.0e-128 464.2 401 59.4
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 1.0e-128 464.2 390 62.1
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.3e-128 463.8 386 60.6
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 1.7e-128 463.4 349 65.3
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 2.2e-128 463.0 439 57.2
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 6.5e-128 461.5 377 62.1
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 1.4e-127 460.3 439 56.9
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 1.9e-127 459.9 414 58.0
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.9e-127 459.9 359 62.1
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 1.9e-127 459.9 419 57.5
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 4.2e-127 458.8 396 58.3
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 4.2e-127 458.8 396 58.3
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 1.2e-126 457.2 425 56.5
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 1.2e-126 457.2 409 59.9
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 1.2e-126 457.2 400 58.8
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 1.2e-126 457.2 419 57.3
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 2.1e-126 456.4 409 59.4
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 2.7e-126 456.1 430 55.1
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 4.6e-126 455.3 419 56.8
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 1.0e-125 454.1 410 57.8
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 1.4e-125 453.8 429 55.5
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 1.4e-125 453.8 420 58.3
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 1.8e-125 453.4 414 56.8
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 3.0e-125 452.6 350 61.7
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 3.0e-125 452.6 350 61.7
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 3.0e-125 452.6 350 61.7
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 3.9e-125 452.2 404 57.4
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.0e-124 449.9 353 64.3
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 3.3e-124 449.1 409 56.2
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 5.7e-124 448.4 358 60.3
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 7.4e-124 448.0 408 56.1
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 9.7e-124 447.6 359 62.7
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.3e-123 447.2 352 63.6
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 1.7e-123 446.8 408 55.9
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 1.7e-123 446.8 358 60.3
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 2.2e-123 446.4 405 59.5
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 2.8e-123 446.0 324 67.0
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 2.8e-123 446.0 439 53.5
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 2.8e-123 446.0 395 58.7
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.4e-122 443.7 416 55.3
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 1.8e-122 443.4 321 66.0
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 6.9e-122 441.4 408 55.4
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 6.9e-122 441.4 408 55.4
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 1.2e-121 440.7 407 55.8
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 2.6e-121 439.5 321 66.0
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 1.3e-120 437.2 400 57.0
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 2.2e-120 436.4 396 57.1
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 6.5e-120 434.9 414 56.3
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 8.5e-120 434.5 325 63.7
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 1.9e-119 433.3 411 56.2
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 4.2e-119 432.2 413 54.5
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 5.5e-119 431.8 411 55.2
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 9.4e-119 431.0 400 55.5
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 9.4e-119 431.0 428 55.4
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 1.6e-118 430.3 317 64.7
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 3.6e-118 429.1 439 52.2
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 3.6e-118 429.1 415 56.1
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 6.1e-118 428.3 377 58.1
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 1.0e-117 427.6 459 52.5
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 2.3e-117 426.4 316 63.3
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 3.0e-117 426.0 377 57.8
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 8.8e-117 424.5 317 63.1
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 1.1e-116 424.1 326 63.8
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 1.5e-116 423.7 406 54.7
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 2.0e-116 423.3 288 68.8
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 1.4e-114 417.2 404 55.0
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 1.8e-114 416.8 399 55.1
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 4.1e-114 415.6 492 46.5
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 9.1e-114 414.5 384 57.3
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 9.1e-114 414.5 384 57.3
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.2e-113 414.1 364 58.5
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 2.0e-113 413.3 389 56.0
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 1.0e-112 411.0 370 54.1
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.7e-112 410.2 364 58.2
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 1.5e-111 407.1 400 52.0
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 6.1e-110 401.7 412 55.8
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 1.8e-109 400.2 310 61.6
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 8.8e-109 397.9 381 54.6
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 2.0e-108 396.7 384 52.6
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 2.6e-108 396.4 533 45.2
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 2.6e-108 396.4 284 65.1
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 4.4e-108 395.6 416 52.4
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 4.1e-106 389.0 288 63.9
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 1.2e-105 387.5 338 55.9
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 2.6e-105 386.3 328 59.5
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 4.5e-105 385.6 401 53.4
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 5.2e-101 372.1 341 53.7
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 7.5e-100 368.2 433 52.2
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.6e-97 360.5 267 61.8
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 2.0e-97 360.1 352 54.3
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.3e-96 357.5 329 58.1
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 7.2e-95 351.7 285 60.7
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 1.0e-93 347.8 359 51.3
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 1.1e-90 337.8 313 49.8
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 1.6e-89 334.0 302 53.3
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 3.5e-89 332.8 227 67.8
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 6.6e-88 328.6 317 53.0
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 4.4e-84 315.8 219 67.1
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 1.9e-79 300.4 354 45.2
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 3.2e-74 283.1 190 72.1
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 1.2e-73 281.2 206 66.5
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 3.5e-73 279.6 162 78.4
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 2.6e-60 236.9 323 37.8
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 8.9e-53 211.8 282 45.7
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 5.4e-50 202.6 177 58.2
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 1.9e-47 194.1 249 41.0
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 2.8e-46 190.3 304 39.1
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 3.6e-38 163.3 204 49.0
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 1.4e-26 124.8 77 74.0
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 2.1e-22 110.9 60 80.0
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 7.6e-20 102.4 96 53.1
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 4.6e-17 93.2 47 85.1
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 1.3e-16 91.7 93 45.2
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.0e-11 75.5 44 75.0
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 1.0e-11 75.5 72 56.9
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 2.3e-08 64.3 32 81.2


User provided reference genes

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