Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 6.8e-102 374.0 192 100.0
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.1e-99 366.7 192 97.9
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 4.1e-99 364.8 192 97.4
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 5.4e-99 364.4 192 96.9
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 5.8e-93 344.4 192 92.7
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 5.8e-93 344.4 192 92.7
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 1.8e-86 322.8 196 87.8
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 1.4e-70 270.0 201 73.6
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 3.1e-70 268.9 200 74.5
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 1.0e-68 263.8 202 71.8
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 7.9e-58 227.6 204 63.7
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 3.9e-57 225.3 205 62.9
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 8.8e-57 224.2 216 58.3
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 4.8e-55 218.4 204 63.2
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 3.1e-54 215.7 207 58.0
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 2.2e-52 209.5 213 57.7
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 5.5e-51 204.9 212 56.6
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 9.4e-51 204.1 210 56.7
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 4.7e-50 201.8 208 54.8
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 7.9e-50 201.1 208 55.3
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 2.3e-49 199.5 202 57.9
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 3.0e-49 199.1 210 54.8
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 2.0e-48 196.4 182 59.3
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 2.6e-48 196.1 203 55.2
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 5.7e-48 194.9 175 59.4
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 9.7e-48 194.1 197 58.4
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 2.2e-47 193.0 203 55.7
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 8.2e-47 191.0 205 57.6
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 1.8e-46 189.9 214 57.5
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 9.1e-46 187.6 186 58.1
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 9.1e-46 187.6 179 58.7
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 2.0e-45 186.4 216 51.4
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 5.9e-45 184.9 219 53.9
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 7.7e-45 184.5 199 53.8
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 1.7e-44 183.3 232 50.0
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 3.8e-44 182.2 200 54.0
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 6.5e-44 181.4 178 56.2
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 1.1e-43 180.6 205 56.6
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 1.1e-43 180.6 200 51.0
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 2.5e-43 179.5 158 61.4
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 3.2e-43 179.1 214 54.2
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 3.2e-43 179.1 214 52.8
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 4.2e-43 178.7 181 58.6
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 9.4e-43 177.6 201 53.7
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 9.4e-43 177.6 214 53.7
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 1.6e-42 176.8 219 51.1
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 4.7e-42 175.3 196 51.5
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 2.0e-40 169.9 214 49.5
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 7.4e-40 167.9 145 60.7
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 1.3e-39 167.2 188 53.7
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 2.2e-39 166.4 196 53.1
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 2.2e-39 166.4 193 47.7
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 3.7e-39 165.6 193 50.8
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 3.7e-39 165.6 193 48.2
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 4.8e-39 165.2 196 51.5
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 1.4e-38 163.7 175 54.9
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.8e-38 163.3 127 66.9
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 1.8e-38 163.3 196 52.0
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 2.4e-38 162.9 156 57.1
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 2.4e-38 162.9 149 59.1
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 9.1e-38 161.0 138 59.4
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 9.1e-38 161.0 191 50.8
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 2.6e-37 159.5 190 51.6
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 4.5e-37 158.7 190 51.1
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 4.5e-37 158.7 215 50.2
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 1.7e-36 156.8 205 47.8
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 1.7e-36 156.8 168 52.4
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 3.8e-36 155.6 154 55.2
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 3.8e-36 155.6 120 62.5
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 1.9e-35 153.3 160 53.8
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 2.5e-35 152.9 234 44.9
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 4.2e-35 152.1 152 56.6
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 5.5e-35 151.8 217 50.2
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 1.2e-34 150.6 197 52.3
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 1.6e-34 150.2 215 48.8
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 2.1e-34 149.8 221 48.0
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 6.1e-34 148.3 194 46.9
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 8.0e-34 147.9 218 48.6
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 1.0e-33 147.5 151 52.3
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 1.4e-33 147.1 217 45.6
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 8.8e-33 144.4 252 42.1
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 2.6e-32 142.9 174 48.9
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 4.4e-32 142.1 216 46.3
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 4.4e-32 142.1 217 48.4
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 4.4e-32 142.1 216 43.1
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 5.7e-32 141.7 153 48.4
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 1.3e-31 140.6 178 48.9
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 1.7e-31 140.2 195 48.2
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 3.7e-31 139.0 216 44.0
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 4.8e-31 138.7 216 44.9
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 8.2e-31 137.9 216 44.9
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 8.2e-31 137.9 216 44.9
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 8.2e-31 137.9 216 44.9
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 2.4e-30 136.3 218 43.1
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 3.1e-30 136.0 179 47.5
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 4.1e-30 135.6 216 46.3
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 1.6e-29 133.7 219 45.2
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 1.6e-29 133.7 219 45.2
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 2.0e-29 133.3 204 44.1
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 4.5e-29 132.1 216 45.8
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 6.5e-28 128.3 114 60.5
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 6.5e-28 128.3 114 60.5
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 6.5e-28 128.3 114 60.5
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 8.5e-28 127.9 218 44.0
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 8.5e-28 127.9 188 45.7
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 1.5e-27 127.1 158 51.3
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 1.9e-27 126.7 174 48.9
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 3.2e-27 125.9 159 50.3
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 9.4e-27 124.4 161 44.1
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 1.6e-26 123.6 191 45.0
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 4.7e-26 122.1 202 44.6
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 2.3e-25 119.8 195 44.6
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 3.1e-22 109.4 100 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 9.1e-22 107.8 84 60.7
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 2.3e-20 103.2 130 46.9
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 2.5e-19 99.8 96 52.1
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 2.0e-16 90.1 157 39.5
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 1.8e-14 83.6 69 69.6
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 1.6e-13 80.5 148 41.2
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 2.0e-13 80.1 167 35.3
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 2.0e-13 80.1 167 35.3
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 4.5e-13 79.0 144 38.9
FAN22G1271 Fragaria x ananassa HOM05D038641 ORTHO05D035590 4.5e-13 79.0 65 72.3
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 5.9e-13 78.6 147 36.1
Phvul.004G158500 Phaseolus vulgaris HOM05D005829 ORTHO05D007246 1.1e-11 74.3 195 30.8
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 4.3e-11 72.4 70 52.9
Glyma.07G090700 Glycine max HOM05D005829 ORTHO05D007246 5.2e-09 65.5 105 39.0
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 3.4e-08 62.8 36 72.2
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 6.4e-07 58.5 160 30.0
Glyma.09G185300 Glycine max HOM05D005829 ORTHO05D007246 1.9e-06 57.0 189 31.2


User provided reference genes

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