Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2939 Fragaria x ananassa HOM05D006379 ORTHO05D007830 4.0e-107 391.3 186 100.0
FAN04G0985 Fragaria x ananassa HOM05D006379 ORTHO05D007830 3.9e-62 241.9 134 91.0
FvH4_5g21760 Fragaria vesca HOM05D006379 ORTHO05D007830 2.6e-50 202.6 160 68.1
FAN18G2446 Fragaria x ananassa HOM05D006379 ORTHO05D007830 7.7e-50 201.1 160 67.5
FAN13G0612 Fragaria x ananassa HOM05D006379 ORTHO05D007830 1.0e-46 190.7 160 65.0
RcHm_v2.0_Chr7g0209251 Rosa chinensis HOM05D006379 ORTHO05D007830 1.8e-43 179.9 161 62.7
FAN10G0731 Fragaria x ananassa HOM05D000053 ORTHO05D000035 5.9e-42 174.9 106 86.8
FAN10G3344 Fragaria x ananassa HOM05D000053 ORTHO05D000035 3.8e-33 145.6 80 90.0
MD06G1032600 Malus domestica HOM05D006379 ORTHO05D007830 4.7e-31 138.7 162 51.2
Prupe.5G039500 Prunus persica HOM05D006379 ORTHO05D007830 1.4e-30 137.1 160 51.2
MD16G1276600 Malus domestica HOM05D006379 ORTHO05D007830 6.8e-30 134.8 162 50.0
FAN10G1237 Fragaria x ananassa HOM05D006379 ORTHO05D007830 9.1e-27 124.4 75 84.0
Dinv25202 Davidia involucrata HOM05D006379 ORTHO05D007830 2.7e-26 122.9 160 48.8
Thecc.03G229900 Theobroma cacao HOM05D006379 ORTHO05D007830 6.6e-25 118.2 160 46.2
Atru.chr6.1742 Acer truncatum HOM05D006379 ORTHO05D007830 1.9e-24 116.7 160 45.6
Potri.003G090400 Populus trichocarpa HOM05D006379 ORTHO05D007830 4.2e-24 115.5 161 47.2
Dinv28941 Davidia involucrata HOM05D006379 ORTHO05D007830 5.5e-24 115.2 160 47.5
GSVIVG01013191001 Vitis vinifera HOM05D006379 ORTHO05D007830 9.5e-24 114.4 160 46.9
TAR362G0922 Trochodendron aralioides HOM05D006379 ORTHO05D007830 1.2e-23 114.0 162 45.7
Sabra03G0060200 Salix brachista HOM05D006379 ORTHO05D007830 2.8e-23 112.8 161 46.0
Gohir.D12G211700 Gossypium hirsutum HOM05D006379 ORTHO05D007830 1.0e-22 110.9 160 47.5
Cfa012418 Carpinus fangiana HOM05D006379 ORTHO05D007830 3.0e-22 109.4 161 44.1
Gohir.A12G209000 Gossypium hirsutum HOM05D006379 ORTHO05D007830 4.0e-22 109.0 160 46.2
Gorai.008G227300 Gossypium raimondii HOM05D006379 ORTHO05D007830 5.2e-22 108.6 166 45.8
TWI81G0344 Tripterygium wilfordii HOM05D006379 ORTHO05D007830 5.2e-22 108.6 166 44.6
Haze_08258 Corylus avellana HOM05D006379 ORTHO05D007830 2.0e-21 106.7 161 43.5
MSTRG.12139 Avicennia marina HOM05D006379 ORTHO05D007830 2.6e-21 106.3 160 46.9
QL12p006043 Quercus lobata HOM05D006379 ORTHO05D007830 2.8e-20 102.8 157 43.3
Actinidia09219 Actinidia chinensis HOM05D006379 ORTHO05D007830 4.9e-20 102.1 152 45.4
Hund14407 Selenicereus undatus HOM05D006379 ORTHO05D007830 1.1e-19 100.9 151 45.0
Sopen08g025630 Solanum pennellii HOM05D006379 ORTHO05D007830 2.4e-19 99.8 163 44.2
AUR62018730 Chenopodium quinoa HOM05D006379 ORTHO05D007830 3.1e-19 99.4 150 44.0
Solyc08g077050.3 Solanum lycopersicum HOM05D006379 ORTHO05D007830 3.1e-19 99.4 163 44.2
CAN.G1659.5 Capsicum annuum HOM05D006379 ORTHO05D007830 9.2e-19 97.8 163 44.2
Manes.15G169000 Manihot esculenta HOM05D006379 ORTHO05D007830 9.2e-19 97.8 160 43.1
PGSC0003DMG400017532 Solanum tuberosum HOM05D006379 ORTHO05D007830 4.5e-18 95.5 163 42.9
CSS0003148 Camellia sinensis var. sinensis HOM05D006379 ORTHO05D007830 5.9e-18 95.1 133 45.1
arahy.Tifrunner.gnm1.ann1.QRW6GR Arachis hypogaea HOM05D006379 ORTHO05D007830 7.8e-18 94.7 139 46.8
Lalb_Chr05g0220541 Lupinus albus HOM05D006379 ORTHO05D007830 1.0e-17 94.4 156 42.3
Aa31LG2G13410 Aethionema arabicum HOM05D006379 ORTHO05D007830 1.3e-17 94.0 160 40.0
CsaV3_3G049310 Cucumis sativus L. HOM05D006379 ORTHO05D007830 1.3e-17 94.0 160 41.2
Migut.A01031 Erythranthe guttata HOM05D006379 ORTHO05D007830 1.3e-17 94.0 161 44.1
HanXRQChr02g0043511 Helianthus annuus HOM05D006379 ORTHO05D007830 1.3e-17 94.0 161 45.3
Duzib084G0654 Durio zibethinus HOM05D006379 ORTHO05D007830 2.9e-17 92.8 161 42.2
COL.COLO4_17063 Corchorus olitorius HOM05D006379 ORTHO05D007830 3.9e-17 92.4 165 41.2
BcaB07g32954 Brassica carinata HOM05D006379 ORTHO05D007830 5.0e-17 92.0 147 42.2
Sc07g0008750 Simmondsia chinensis HOM05D006379 ORTHO05D007830 5.0e-17 92.0 160 41.9
CiPaw.12G062300 Carya illinoinensis HOM05D006379 ORTHO05D007830 8.6e-17 91.3 161 41.6
ECA240G2404 Erigeron canadensis HOM05D006379 ORTHO05D007830 8.6e-17 91.3 160 43.1
BcaC07g37588 Brassica carinata HOM05D006379 ORTHO05D007830 1.1e-16 90.9 157 39.5
CANSAT21G0322 Cannabis sativa HOM05D006379 ORTHO05D007830 1.5e-16 90.5 161 42.2
Cc08_g02510 Coffea canephora HOM05D006379 ORTHO05D007830 2.5e-16 89.7 151 45.7
Eucgr.E00291 Eucalyptus grandis HOM05D006379 ORTHO05D007830 2.5e-16 89.7 122 48.4
AUR62007269 Chenopodium quinoa HOM05D006379 ORTHO05D007830 4.3e-16 89.0 150 42.0
Ciclev10032819m.g Citrus clementina HOM05D006379 ORTHO05D007830 4.3e-16 89.0 164 41.5
Nitab4.5_0001276g0050 Nicotiana tabacum HOM05D006379 ORTHO05D007830 4.3e-16 89.0 160 43.1
Ah.12g054900 Amaranthus hybridus HOM05D006379 ORTHO05D007830 5.6e-16 88.6 122 46.7
Rhsim07G0125500 Rhododendron simsii HOM05D006379 ORTHO05D007830 7.3e-16 88.2 98 53.1
vmacro14164 Vaccinium macrocarpon HOM05D006379 ORTHO05D007830 7.3e-16 88.2 163 39.9
A09p33660 Brassica napus HOM05D006379 ORTHO05D007830 9.5e-16 87.8 154 39.6
BraA09t38912Z Brassica rapa HOM05D006379 ORTHO05D007830 9.5e-16 87.8 154 39.6
Sp1g28350 Schrenkiella parvula HOM05D006379 ORTHO05D007830 9.5e-16 87.8 156 38.5
Sed0015821 Sechium edule HOM05D006379 ORTHO05D007830 9.5e-16 87.8 160 38.8
AL1G48020 Arabidopsis lyrata HOM05D006379 ORTHO05D007830 1.2e-15 87.4 156 39.1
CARHR032000 Cardamine hirsuta HOM05D006379 ORTHO05D007830 1.2e-15 87.4 124 42.7
SalBow6G2021 Salvia bowleyana HOM05D006379 ORTHO05D007830 1.2e-15 87.4 156 41.0
THA.LOC104814439 Tarenaya hassleriana HOM05D006379 ORTHO05D007830 1.6e-15 87.0 149 42.3
A08p09010 Brassica napus HOM05D006379 ORTHO05D007830 2.1e-15 86.7 157 38.2
Nitab4.5_0002373g0030 Nicotiana tabacum HOM05D006379 ORTHO05D007830 2.1e-15 86.7 155 43.9
AL1G46800 Arabidopsis lyrata HOM05D006379 ORTHO05D007830 2.8e-15 86.3 156 39.1
Hma1.2p1_0991F.1_g245020 Hydrangea macrophylla HOM05D006379 ORTHO05D007830 3.6e-15 85.9 163 41.7
Peaxi162Scf00006g00426 Petunia axillaris HOM05D006379 ORTHO05D007830 3.6e-15 85.9 160 41.2
Thhalv10008887m.g Eutrema salsugineum HOM05D006379 ORTHO05D007830 4.7e-15 85.5 123 43.1
Lj2A242T73 Lonicera japonica HOM05D006379 ORTHO05D007830 4.7e-15 85.5 207 34.3
Nn4g25240 Nelumbo nucifera HOM05D006379 ORTHO05D007830 4.7e-15 85.5 153 41.2
Carub.0001s3096 Capsella rubella HOM05D006379 ORTHO05D007830 6.1e-15 85.1 158 39.2
BolC8t47934H Brassica oleracea HOM05D006379 ORTHO05D007830 8.0e-15 84.7 173 36.4
Aqoxy5G02873 Aquilegia oxysepala HOM05D006379 ORTHO05D007830 1.0e-14 84.3 131 42.0
AT1G32550 Arabidopsis thaliana HOM05D006379 ORTHO05D007830 1.0e-14 84.3 156 38.5
PGR004G2142 Punica granatum HOM05D006379 ORTHO05D007830 1.0e-14 84.3 163 42.9
Sed0017672 Sechium edule HOM05D006379 ORTHO05D007830 1.8e-14 83.6 156 39.7
BraA08t32902Z Brassica rapa HOM05D006379 ORTHO05D007830 2.3e-14 83.2 173 35.8
Nitab4.5_0000089g0020 Nicotiana tabacum HOM05D006379 ORTHO05D007830 8.9e-14 81.3 146 44.5
Glyma.05G112100 Glycine max HOM05D006379 ORTHO05D007830 1.2e-13 80.9 140 38.6
TPR.G29030 Trifolium pratense HOM05D006379 ORTHO05D007830 1.5e-13 80.5 130 42.3
DCAR_024971 Daucus carota HOM05D006379 ORTHO05D007830 2.6e-13 79.7 184 38.0
ATR0796G077 Amborella trichopoda HOM05D006379 ORTHO05D007830 4.4e-13 79.0 103 48.5
SGA_v2.0_scaffold104G30206 Striga asiatica HOM05D006379 ORTHO05D007830 4.4e-13 79.0 211 33.6
Glyma.17G154900 Glycine max HOM05D006379 ORTHO05D007830 5.8e-13 78.6 140 39.3
PSO170G4107 Papaver somniferum HOM05D006379 ORTHO05D007830 7.5e-13 78.2 176 36.9
Phvul.003G230200 Phaseolus vulgaris HOM05D006379 ORTHO05D007830 7.5e-13 78.2 140 39.3
Os03g0685000 Oryza sativa ssp. japonica HOM05D006379 ORTHO05D007830 9.8e-13 77.8 128 41.4
Medtr4g098490 Medicago truncatula HOM05D006379 ORTHO05D007830 1.3e-12 77.4 159 39.6
Zm00001eb217230 Zea mays HOM05D006379 ORTHO05D007830 2.9e-12 76.3 100 47.0
PSO357G0477 Papaver somniferum HOM05D006379 ORTHO05D007830 6.4e-12 75.1 141 39.7
FAN20G0396 Fragaria x ananassa HOM05D006379 ORTHO05D007830 1.4e-11 73.9 45 82.2
CSS0039884 Camellia sinensis var. sinensis HOM05D006379 ORTHO05D007830 4.1e-11 72.4 88 51.1
Psat4g078880 Pisum sativum HOM05D006379 ORTHO05D007830 9.2e-11 71.2 137 40.1
Lj4g0008037 Lotus japonicus HOM05D006379 ORTHO05D007830 1.2e-10 70.9 158 36.1
VMungo0251G0261 Vigna mungo HOM05D000740 ORTHO05D005071 1.2e-10 70.9 140 37.9
HPP92_013491 Vanilla planifolia HOM05D006379 ORTHO05D007830 2.0e-10 70.1 100 42.0
Duzib205G0717 Durio zibethinus HOM05D006379 ORTHO05D007830 4.6e-10 68.9 93 46.2
unitig_744.g24478 Utricularia gibba HOM05D006379 ORTHO05D007830 6.0e-10 68.6 146 37.7
Lsat_1_v5_gn_6_78541 Lactuca sativa HOM05D006379 ORTHO05D007830 2.3e-09 66.6 94 45.7
MELO3C003395.2 Cucumis melo HOM05D006379 ORTHO05D007830 3.0e-09 66.2 116 39.7
HPP92_026045 Vanilla planifolia HOM05D006379 ORTHO05D007830 3.9e-09 65.9 149 34.2
BcaB04g17950 Brassica carinata HOM05D006379 ORTHO05D007830 1.5e-08 63.9 95 41.1
EL10Ac5g12142 Beta vulgaris HOM05D006379 ORTHO05D007830 1.9e-08 63.5 137 35.8
SEGI_19144 Sequoiadendron giganteum HOM05D006379 ORTHO05D007830 2.5e-08 63.2 94 42.6
ClCG09G012080 Citrullus lanatus HOM05D006379 ORTHO05D007830 3.3e-08 62.8 93 41.9
Pp3c17_15760 Physcomitrium patens HOM05D006379 ORTHO05D007830 3.3e-08 62.8 97 37.1
MBI18_g03873_MAGBIO Magnolia biondii HOM05D006379 ORTHO05D007830 5.6e-08 62.0 134 34.3
Potri.003G176400 Populus trichocarpa HOM05D006379 ORTHO05D007830 5.6e-08 62.0 88 46.6
AagrBONN_evm.TU.Sc2ySwM_228.4201 Anthoceros agrestis HOM05D006379 ORTHO05D007830 1.2e-07 60.8 97 40.2
SMO134G0248 Selaginella moellendorffii HOM05D006379 ORTHO05D007830 1.2e-07 60.8 97 40.2
Ca_22070_v3 Cicer arietinum L. HOM05D006379 ORTHO05D007830 2.1e-07 60.1 190 30.5
arahy.Tifrunner.gnm1.ann1.AEP3KG Arachis hypogaea HOM05D006379 ORTHO05D007830 4.0e-06 55.8 93 38.7
arahy.Tifrunner.gnm1.ann1.YTUI1C Arachis hypogaea HOM05D006379 ORTHO05D007830 4.0e-06 55.8 93 38.7


User provided reference genes

Program Settings