Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2805 Fragaria x ananassa HOM05D000316 ORTHO05D017889 1.4e-66 256.1 133 100.0
FAN13G3045 Fragaria x ananassa HOM05D000316 ORTHO05D001978 2.3e-19 99.4 52 100.0
FAN04G2387 Fragaria x ananassa HOM05D000316 ORTHO05D017889 3.8e-19 98.6 58 87.9
FAN13G0670 Fragaria x ananassa HOM05D000316 ORTHO05D001978 8.6e-19 97.4 52 98.1
FvH4_5g03830 Fragaria vesca HOM05D000316 ORTHO05D001978 3.3e-18 95.5 52 94.2
RcHm_v2.0_Chr7g0195671 Rosa chinensis HOM05D000316 ORTHO05D001978 3.2e-13 79.0 52 78.8
MD06G1099700 Malus domestica HOM05D000316 ORTHO05D001978 1.1e-10 70.5 54 72.2
MD14G1119400 Malus domestica HOM05D000316 ORTHO05D001978 1.5e-10 70.1 54 72.2
QL02p031723 Quercus lobata HOM05D000316 ORTHO05D001978 1.9e-10 69.7 55 69.1
ATR1131G014 Amborella trichopoda HOM05D000316 ORTHO05D001978 2.1e-09 66.2 64 56.2
EL10Ac5g12868 Beta vulgaris HOM05D000316 ORTHO05D001978 4.7e-09 65.1 57 61.4
Gorai.003G156200 Gossypium raimondii HOM05D000316 ORTHO05D001978 4.7e-09 65.1 60 60.0
Gohir.A03G020000 Gossypium hirsutum HOM05D000316 ORTHO05D001978 8.0e-09 64.3 57 61.4
AUR62010795 Chenopodium quinoa HOM05D000316 ORTHO05D001978 1.4e-08 63.5 57 59.6
Gohir.D03G148900 Gossypium hirsutum HOM05D000316 ORTHO05D001978 1.4e-08 63.5 60 60.0
Nn1g01779 Nelumbo nucifera HOM05D000316 ORTHO05D001978 1.4e-08 63.5 57 61.4
MBI06_g04287_MAGBIO Magnolia biondii HOM05D000316 ORTHO05D001978 2.3e-08 62.8 57 59.6
Hund11411 Selenicereus undatus HOM05D000316 ORTHO05D001978 2.3e-08 62.8 57 61.4
Atru.chr1.288 Acer truncatum HOM05D000316 ORTHO05D001978 3.1e-08 62.4 57 56.1
Aqoxy7G00218 Aquilegia oxysepala HOM05D000316 ORTHO05D001978 4.0e-08 62.0 57 61.4
ClCG01G000690 Citrullus lanatus HOM05D000316 ORTHO05D001978 4.0e-08 62.0 57 57.9
MELO3C005861.2 Cucumis melo HOM05D000316 ORTHO05D001978 4.0e-08 62.0 57 57.9
CsaV3_5G000790 Cucumis sativus L. HOM05D000316 ORTHO05D001978 4.0e-08 62.0 57 57.9
CiPaw.11G125200 Carya illinoinensis HOM05D000316 ORTHO05D001978 5.2e-08 61.6 57 61.4
Thecc.03G283500 Theobroma cacao HOM05D000316 ORTHO05D001978 5.2e-08 61.6 60 58.3
CSS0003345 Camellia sinensis var. sinensis HOM05D000316 ORTHO05D001978 6.8e-08 61.2 57 57.9
Hma1.2p1_0952F.1_g240810 Hydrangea macrophylla HOM05D000316 ORTHO05D001978 6.8e-08 61.2 57 61.4
Dinv37560 Davidia involucrata HOM05D000316 ORTHO05D001978 8.9e-08 60.8 57 59.6
Haze_08689 Corylus avellana HOM05D000316 ORTHO05D017889 1.2e-07 60.5 54 55.6
CAN.G532.53 Capsicum annuum HOM05D000316 ORTHO05D001978 1.5e-07 60.1 58 58.6
AUR62019794 Chenopodium quinoa HOM05D000316 ORTHO05D001978 1.5e-07 60.1 57 54.4
Potri.003G136000 Populus trichocarpa HOM05D000316 ORTHO05D001978 1.5e-07 60.1 38 68.4
Sed0006797 Sechium edule HOM05D000316 ORTHO05D001978 1.5e-07 60.1 57 57.9
Duzib205G1112 Durio zibethinus HOM05D000316 ORTHO05D001978 2.0e-07 59.7 53 58.5
Glyma.11G019300 Glycine max HOM05D000316 ORTHO05D001978 2.0e-07 59.7 57 54.4
TAR374G1363 Trochodendron aralioides HOM05D000316 ORTHO05D001978 2.0e-07 59.7 57 56.1
vmacro11455 Vaccinium macrocarpon HOM05D000316 ORTHO05D001978 2.0e-07 59.7 55 54.5
arahy.Tifrunner.gnm1.ann1.Z92X92 Arachis hypogaea HOM05D000316 ORTHO05D001978 2.6e-07 59.3 61 52.5
CiPaw.06G006400 Carya illinoinensis HOM05D000316 ORTHO05D001978 2.6e-07 59.3 57 57.9
MBI18_g10197_MAGBIO Magnolia biondii HOM05D000075 ORTHO05D030044 2.6e-07 59.3 60 55.0
Ciclev10020783m.g Citrus clementina HOM05D000316 ORTHO05D001978 3.4e-07 58.9 59 50.8
LjContig00312_ERROPOS870357g0024732 Lotus japonicus HOM05D000316 ORTHO05D001978 3.4e-07 58.9 57 54.4
Medtr5g009700 Medicago truncatula HOM05D000316 ORTHO05D001978 3.4e-07 58.9 57 54.4
TPR.G6697 Trifolium pratense HOM05D000316 ORTHO05D001978 3.4e-07 58.9 57 54.4
TAR333G0004 Trochodendron aralioides HOM05D000316 ORTHO05D001978 3.4e-07 58.9 57 57.9
Solyc08g081920.4 Solanum lycopersicum HOM05D000316 ORTHO05D001978 4.4e-07 58.5 58 56.9
VMungo1309G2206 Vigna mungo HOM05D000316 ORTHO05D001978 4.4e-07 58.5 57 57.9
Actinidia01405 Actinidia chinensis HOM05D000316 ORTHO05D001978 5.8e-07 58.2 57 52.6
arahy.Tifrunner.gnm1.ann1.M6E104 Arachis hypogaea HOM05D000316 ORTHO05D001978 5.8e-07 58.2 61 52.5
Gohir.A09G191800 Gossypium hirsutum HOM05D000316 ORTHO05D001978 5.8e-07 58.2 60 55.0
Gohir.D09G186200 Gossypium hirsutum HOM05D000316 ORTHO05D001978 5.8e-07 58.2 60 55.0
Gorai.006G208900 Gossypium raimondii HOM05D000316 ORTHO05D001978 5.8e-07 58.2 60 55.0
MD01G1213800 Malus domestica HOM05D000316 ORTHO05D001978 5.8e-07 58.2 57 54.4
QL09p011216 Quercus lobata HOM05D000316 ORTHO05D001978 5.8e-07 58.2 57 56.1
SEGI_31069 Sequoiadendron giganteum HOM05D000316 ORTHO05D017889 5.8e-07 58.2 62 46.8
CSS0002690 Camellia sinensis var. sinensis HOM05D000316 ORTHO05D001978 7.5e-07 57.8 57 56.1
Ca_24526_v3 Cicer arietinum L. HOM05D000669 ORTHO05D000679 7.5e-07 57.8 57 54.4
Sed0013647 Sechium edule HOM05D000316 ORTHO05D001978 7.5e-07 57.8 57 56.1
TWI39G1269 Tripterygium wilfordii HOM05D000316 ORTHO05D001978 7.5e-07 57.8 42 64.3
CANSAT21G1943 Cannabis sativa HOM05D000316 ORTHO05D001978 9.8e-07 57.4 57 56.1
Manes.14G019528 Manihot esculenta HOM05D000316 ORTHO05D001978 9.8e-07 57.4 57 56.1
CANSAT21G0091 Cannabis sativa HOM05D000316 ORTHO05D001978 1.3e-06 57.0 55 52.7
CDE10G0740 Ceratophyllum demersum HOM05D000316 ORTHO05D001978 1.3e-06 57.0 42 64.3
Cc08_g15640 Coffea canephora HOM05D000316 ORTHO05D001978 1.3e-06 57.0 60 50.0
Manes.02G012900 Manihot esculenta HOM05D000316 ORTHO05D001978 1.3e-06 57.0 62 54.8
Eucgr.K00317 Eucalyptus grandis HOM05D000316 ORTHO05D001978 1.7e-06 56.6 58 50.0
MBI17_g40150_MAGBIO Magnolia biondii HOM05D000075 ORTHO05D030044 1.7e-06 56.6 57 52.6
MD07G1283500 Malus domestica HOM05D000316 ORTHO05D001978 1.7e-06 56.6 57 54.4
Phvul.009G136600 Phaseolus vulgaris HOM05D000316 ORTHO05D001978 1.7e-06 56.6 58 55.2
SalBow4G2433 Salvia bowleyana HOM05D000316 ORTHO05D001978 1.7e-06 56.6 57 50.9
SalBow4G2551 Salvia bowleyana HOM05D000316 ORTHO05D001978 1.7e-06 56.6 57 50.9
CSS0043798 Camellia sinensis var. sinensis HOM05D000316 ORTHO05D001978 2.2e-06 56.2 57 54.4
Cfa012866 Carpinus fangiana HOM05D000316 ORTHO05D001978 2.2e-06 56.2 38 65.8
Ciclev10005228m.g Citrus clementina HOM05D000316 ORTHO05D001978 2.2e-06 56.2 57 52.6
MSTRG.27053 Avicennia marina HOM05D000316 ORTHO05D001978 2.9e-06 55.8 57 50.9
Glyma.04G239300 Glycine max HOM05D000316 ORTHO05D001978 2.9e-06 55.8 58 55.2
PGR142G3103 Punica granatum HOM05D000316 ORTHO05D001978 2.9e-06 55.8 57 50.9
Os08g0386700 Oryza sativa ssp. japonica HOM05D000316 ORTHO05D001978 3.7e-06 55.5 58 46.6
Rhsim03G0197400 Rhododendron simsii HOM05D000316 ORTHO05D001978 3.7e-06 55.5 57 52.6
SGA_v2.0_scaffold111G31447 Striga asiatica HOM05D000316 ORTHO05D001978 3.7e-06 55.5 60 50.0
Actinidia34184 Actinidia chinensis HOM05D000316 ORTHO05D001978 4.9e-06 55.1 57 54.4
Dinv35298 Davidia involucrata HOM05D000316 ORTHO05D001978 4.9e-06 55.1 57 52.6
FvH4_7g30880 Fragaria vesca HOM05D000316 ORTHO05D001978 4.9e-06 55.1 55 50.9
FAN01G1675 Fragaria x ananassa HOM05D000316 ORTHO05D001978 4.9e-06 55.1 55 50.9
FAN03G2406 Fragaria x ananassa HOM05D000316 ORTHO05D001978 4.9e-06 55.1 55 50.9
FAN06G4271 Fragaria x ananassa HOM05D000316 ORTHO05D001978 4.9e-06 55.1 55 50.9
HPP92_022897 Vanilla planifolia HOM05D000316 ORTHO05D001978 4.9e-06 55.1 57 50.9
HPP92_026116 Vanilla planifolia HOM05D000316 ORTHO05D001978 4.9e-06 55.1 57 50.9
Aa31LG3G9200 Aethionema arabicum HOM05D000316 ORTHO05D001978 6.4e-06 54.7 41 58.5
Lj3C913T7 Lonicera japonica HOM05D000316 ORTHO05D001978 6.4e-06 54.7 55 52.7
Lj1g0005188 Lotus japonicus HOM05D000316 ORTHO05D001978 6.4e-06 54.7 42 59.5
Medtr3g090600 Medicago truncatula HOM05D000316 ORTHO05D001978 6.4e-06 54.7 57 52.6
AL8G28050 Arabidopsis lyrata HOM05D000316 ORTHO05D001978 8.3e-06 54.3 41 58.5
Carub.0008s1352 Capsella rubella HOM05D000316 ORTHO05D001978 8.3e-06 54.3 41 58.5
CAN.G108.15 Capsicum annuum HOM05D000316 ORTHO05D001978 8.3e-06 54.3 57 50.9
CARHR266400 Cardamine hirsuta HOM05D000316 ORTHO05D001978 8.3e-06 54.3 41 58.5
Thhalv10014038m.g Eutrema salsugineum HOM05D000316 ORTHO05D001978 8.3e-06 54.3 41 58.5
Hma1.2p1_0142F.1_g064110 Hydrangea macrophylla HOM05D000316 ORTHO05D001978 8.3e-06 54.3 58 50.0
Hma1.2p1_1891F.1_g306680 Hydrangea macrophylla HOM05D000316 ORTHO05D001978 8.3e-06 54.3 58 50.0
PSO135G1021 Papaver somniferum HOM05D000316 ORTHO05D001978 8.3e-06 54.3 57 54.4
PSO384G3814 Papaver somniferum HOM05D000316 ORTHO05D001978 8.3e-06 54.3 57 54.4
Sp6g15490 Schrenkiella parvula HOM05D000316 ORTHO05D001978 8.3e-06 54.3 41 58.5


User provided reference genes

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