Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.7e-181 638.6 351 100.0
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.5e-168 596.3 355 94.4
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 4.5e-168 594.7 358 94.7
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 1.4e-164 583.2 358 93.6
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 6.7e-164 580.9 358 93.0
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 6.3e-146 521.2 358 86.3
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 2.8e-109 399.4 347 67.7
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 6.2e-93 345.1 341 63.0
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 1.3e-90 337.4 358 62.3
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 2.1e-88 330.1 349 60.5
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 3.7e-85 319.3 350 58.9
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 6.2e-85 318.5 369 59.6
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 3.1e-84 316.2 349 60.7
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 4.0e-84 315.8 362 56.4
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 7.6e-83 311.6 347 60.2
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 7.6e-83 311.6 369 57.5
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.3e-82 310.8 355 58.6
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 4.9e-82 308.9 341 59.5
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 2.1e-80 303.5 357 57.4
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 7.9e-80 301.6 336 59.5
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 1.9e-78 297.0 353 56.4
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 4.3e-78 295.8 348 57.5
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 1.6e-77 293.9 345 57.7
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 2.8e-77 293.1 351 56.1
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 4.8e-77 292.4 361 56.2
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 4.8e-77 292.4 357 56.9
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 6.9e-76 288.5 350 55.4
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 9.0e-76 288.1 360 55.8
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.0e-74 284.6 351 55.0
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 5.0e-74 282.3 368 51.6
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.5e-73 280.0 353 53.8
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 2.5e-73 280.0 355 53.5
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 4.2e-73 279.3 354 53.7
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 7.1e-73 278.5 313 57.2
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 1.2e-72 277.7 294 60.5
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.1e-72 276.9 357 52.1
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 2.7e-72 276.6 360 53.9
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.1e-70 271.2 332 54.5
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 1.9e-70 270.4 366 51.1
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 9.7e-70 268.1 374 50.3
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 2.8e-69 266.5 285 60.0
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 4.1e-68 262.7 353 53.5
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 9.0e-68 261.5 351 51.3
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 2.0e-67 260.4 367 51.2
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 5.9e-67 258.8 346 50.9
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 5.9e-67 258.8 358 52.0
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 1.0e-66 258.1 355 51.5
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 1.0e-66 258.1 362 50.0
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.3e-66 257.7 356 51.4
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 8.5e-66 255.0 368 51.9
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.1e-65 254.6 356 50.3
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 9.4e-65 251.5 351 51.9
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 1.2e-64 251.1 344 50.3
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.6e-64 250.8 364 50.0
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 2.1e-64 250.4 355 52.4
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.1e-64 250.4 342 48.2
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 2.7e-64 250.0 355 49.6
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 1.0e-63 248.1 346 49.7
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 5.1e-63 245.7 354 52.0
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.5e-62 244.2 342 47.7
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 2.5e-62 243.4 354 49.7
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 2.5e-62 243.4 385 47.5
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 5.7e-62 242.3 372 49.7
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 1.7e-61 240.7 350 50.9
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 4.8e-61 239.2 366 47.5
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 8.2e-61 238.4 359 48.5
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 8.2e-61 238.4 361 47.4
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.4e-60 237.7 377 48.8
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 3.1e-60 236.5 362 48.6
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 4.1e-60 236.1 353 48.2
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 4.1e-60 236.1 305 53.4
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 1.2e-59 234.6 341 50.1
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 2.0e-59 233.8 355 47.0
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 3.4e-59 233.0 355 46.8
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 1.7e-58 230.7 337 48.7
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 2.2e-58 230.3 397 47.1
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 2.2e-58 230.3 352 48.3
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 5.0e-58 229.2 353 47.6
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 5.0e-58 229.2 333 50.2
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 5.0e-58 229.2 353 47.9
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 6.5e-58 228.8 347 46.7
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 2.5e-57 226.9 352 48.0
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 4.2e-57 226.1 377 48.3
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 5.5e-57 225.7 347 48.1
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 9.4e-57 224.9 354 46.3
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 1.6e-56 224.2 340 48.5
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 1.6e-56 224.2 322 45.7
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 4.7e-56 222.6 363 48.5
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 6.1e-56 222.2 349 47.3
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 7.9e-56 221.9 222 60.8
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 7.9e-56 221.9 350 48.0
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 2.3e-55 220.3 355 45.9
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 3.0e-55 219.9 333 48.9
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 3.0e-55 219.9 355 46.2
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 5.1e-55 219.2 358 46.4
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 4.4e-54 216.1 369 46.1
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 1.7e-53 214.2 363 45.5
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 8.2e-53 211.8 330 48.2
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 5.3e-52 209.1 348 44.3
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.5e-51 207.6 351 42.5
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 1.5e-51 207.6 377 44.0
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 2.0e-51 207.2 364 46.2
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 7.7e-51 205.3 394 44.7
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.1e-49 201.4 371 44.5
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 5.5e-49 199.1 311 45.0
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 5.5e-49 199.1 231 54.5
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 1.2e-48 198.0 312 46.2
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 1.6e-48 197.6 353 46.7
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 1.0e-47 194.9 353 43.6
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 1.8e-47 194.1 357 45.4
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 3.3e-46 189.9 361 42.1
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 5.3e-44 182.6 344 41.0
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 1.7e-42 177.6 339 44.8
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.7e-42 177.6 359 39.3
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 5.5e-41 172.6 267 46.4
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 7.2e-41 172.2 336 39.9
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 9.4e-41 171.8 323 41.8
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 4.7e-40 169.5 265 45.7
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 8.0e-40 168.7 348 39.1
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 1.0e-39 168.3 348 40.5
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 2.0e-38 164.1 349 38.7
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 1.7e-37 161.0 341 39.0
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 1.7e-37 161.0 344 40.4
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 2.8e-37 160.2 348 37.9
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 8.3e-37 158.7 349 39.8
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 8.3e-37 158.7 349 39.8
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 8.3e-37 158.7 349 39.8
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 7.7e-35 152.1 245 46.1
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 3.8e-34 149.8 316 39.9
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 1.8e-31 141.0 371 36.7
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 7.5e-30 135.6 340 37.4
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 8.9e-23 112.1 410 30.2
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.5e-22 111.3 176 45.5
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 1.6e-11 74.7 208 35.1
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 5.0e-10 69.7 205 30.2
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 1.5e-09 68.2 153 33.3
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 1.5e-09 68.2 98 42.9
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 4.3e-09 66.6 176 32.4
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 4.3e-09 66.6 193 29.0
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 4.3e-09 66.6 200 32.5
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 5.6e-09 66.2 111 39.6
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 7.3e-09 65.9 44 75.0
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 1.2e-08 65.1 95 40.0
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.6e-08 64.7 113 38.1
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.6e-08 64.7 113 38.1
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 2.8e-08 63.9 131 35.9
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 2.8e-08 63.9 172 31.4
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 3.6e-08 63.5 132 34.1
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 3.6e-08 63.5 223 30.5
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 6.2e-08 62.8 157 31.2
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 6.2e-08 62.8 147 35.4
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 1.1e-07 62.0 95 41.1
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 1.1e-07 62.0 208 30.3
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 1.1e-07 62.0 176 30.7
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 1.4e-07 61.6 179 31.8
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 1.8e-07 61.2 61 49.2
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 1.8e-07 61.2 100 38.0
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 1.8e-07 61.2 181 30.4
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 2.3e-07 60.8 122 33.6
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 2.3e-07 60.8 100 39.0
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 3.1e-07 60.5 116 35.3
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 6.8e-07 59.3 197 29.9
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 8.9e-07 58.9 142 35.2
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 1.2e-06 58.5 157 30.6
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 1.2e-06 58.5 194 29.9
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 1.5e-06 58.2 190 27.9
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 2.0e-06 57.8 91 37.4
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 2.6e-06 57.4 86 41.9
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 3.4e-06 57.0 93 39.8
Cc07_g02980 Coffea canephora HOM05D008415 ORTHO05D010601 3.4e-06 57.0 92 40.2
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 4.4e-06 56.6 153 31.4
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 9.8e-06 55.5 81 40.7
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 9.8e-06 55.5 189 31.2


User provided reference genes

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