Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2667 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.5e-96 356.3 197 100.0
FAN18G1415 Fragaria x ananassa HOM05D000184 ORTHO05D000032 3.3e-91 338.6 197 95.9
FAN13G3333 Fragaria x ananassa HOM05D000184 ORTHO05D000032 7.5e-88 327.4 189 97.9
FvH4_5g23660 Fragaria vesca HOM05D000184 ORTHO05D000032 1.4e-86 323.2 189 96.8
FAN18G1854 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.4e-86 323.2 189 96.8
FAN13G0376 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.2e-85 320.1 188 96.8
RcHm_v2.0_Chr7g0212961 Rosa chinensis HOM05D000184 ORTHO05D000032 4.0e-81 305.1 189 89.9
FAN04G1742 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.9e-71 272.3 166 94.6
MD00G1000500 Malus domestica HOM05D000184 ORTHO05D000032 7.6e-64 247.7 190 76.8
Prupe.5G023700 Prunus persica HOM05D000184 ORTHO05D000032 4.9e-63 245.0 189 77.2
Haze_08099 Corylus avellana HOM05D000184 ORTHO05D000032 1.8e-44 183.3 177 63.8
Cfa012563 Carpinus fangiana HOM05D000184 ORTHO05D000032 5.7e-43 178.3 173 63.0
QL12p000507 Quercus lobata HOM05D000184 ORTHO05D000032 8.2e-42 174.5 179 60.9
CiPaw.12G070500 Carya illinoinensis HOM05D000184 ORTHO05D000032 3.8e-39 165.6 179 62.0
Rhsim11G0027000 Rhododendron simsii HOM05D000184 ORTHO05D000032 4.5e-32 142.1 172 57.6
CSS0006111 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 3.8e-31 139.0 173 54.9
GSVIVG01022645001 Vitis vinifera HOM05D000184 ORTHO05D000032 3.8e-31 139.0 171 52.0
Dinv15840 Davidia involucrata HOM05D000184 ORTHO05D000032 6.5e-31 138.3 181 56.9
COL.COLO4_16881 Corchorus olitorius HOM05D001577 ORTHO05D003311 9.4e-30 134.4 187 54.0
Glyma.01G009600 Glycine max HOM05D000184 ORTHO05D000032 1.2e-29 134.0 175 54.9
vmacro00073 Vaccinium macrocarpon HOM05D000184 ORTHO05D000032 1.2e-29 134.0 173 54.9
vmacro23307 Vaccinium macrocarpon HOM05D000184 ORTHO05D000032 1.2e-29 134.0 173 54.9
Nn1g02036 Nelumbo nucifera HOM05D000184 ORTHO05D000032 3.6e-29 132.5 185 52.4
Atru.chr6.1581 Acer truncatum HOM05D000184 ORTHO05D000032 7.9e-29 131.3 185 48.6
TWI60G1306 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 1.0e-28 131.0 178 52.2
Duzib084G0428 Durio zibethinus HOM05D000184 ORTHO05D000032 3.0e-28 129.4 182 52.2
TWI34G0506 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 3.0e-28 129.4 179 52.5
Hma1.2p1_0979F.1_g243570 Hydrangea macrophylla HOM05D000184 ORTHO05D000032 3.9e-28 129.0 178 52.8
Glyma.09G211400 Glycine max HOM05D000184 ORTHO05D000032 6.7e-28 128.3 175 53.7
Ciclev10002089m.g Citrus clementina HOM05D000184 ORTHO05D000032 1.1e-27 127.5 179 54.2
MSTRG.11893 Avicennia marina HOM05D000184 ORTHO05D000032 3.3e-27 125.9 181 52.5
Phvul.002G132500 Phaseolus vulgaris HOM05D000184 ORTHO05D000032 7.4e-27 124.8 175 53.1
Thecc.03G314700 Theobroma cacao HOM05D000184 ORTHO05D000032 9.7e-27 124.4 183 50.8
Potri.003G100100 Populus trichocarpa HOM05D000184 ORTHO05D000032 1.7e-26 123.6 179 50.8
Lsat_1_v5_gn_3_20841 Lactuca sativa HOM05D000184 ORTHO05D000032 2.8e-26 122.9 172 53.5
Actinidia27269 Actinidia chinensis HOM05D000184 ORTHO05D000032 6.3e-26 121.7 168 53.0
VMungo1215G2615 Vigna mungo HOM05D000184 ORTHO05D000032 8.2e-26 121.3 175 52.0
Actinidia01272 Actinidia chinensis HOM05D000184 ORTHO05D000032 1.1e-25 120.9 171 52.0
Potri.001G133400 Populus trichocarpa HOM05D000184 ORTHO05D000032 6.9e-25 118.2 179 49.2
TAR629G1263 Trochodendron aralioides HOM05D000184 ORTHO05D000032 9.1e-25 117.9 184 51.1
HanXRQChr17g0537661 Helianthus annuus HOM05D000184 ORTHO05D000032 2.6e-24 116.3 173 51.4
ECA246G3975 Erigeron canadensis HOM05D000184 ORTHO05D000032 3.8e-23 112.5 174 52.3
MSTRG.25715 Avicennia marina HOM05D000184 ORTHO05D000032 5.0e-23 112.1 178 49.4
Cc08_g04300 Coffea canephora HOM05D000184 ORTHO05D000032 5.0e-23 112.1 175 48.6
SGA_v2.0_scaffold96G29051 Striga asiatica HOM05D000184 ORTHO05D000032 8.5e-23 111.3 172 48.3
CSS0029195 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 1.4e-22 110.5 151 53.6
DCAR_008191 Daucus carota HOM05D000184 ORTHO05D000032 1.9e-22 110.2 142 45.8
PSO063G7571 Papaver somniferum HOM05D000184 ORTHO05D000032 1.9e-22 110.2 175 47.4
Lj2g0015947 Lotus japonicus HOM05D000184 ORTHO05D000032 4.2e-22 109.0 181 48.6
Sabra03G0068100 Salix brachista HOM05D000184 ORTHO05D000032 4.2e-22 109.0 184 46.7
DCAR_004252 Daucus carota HOM05D000184 ORTHO05D000032 9.4e-22 107.8 119 50.4
PGSC0003DMG400009304 Solanum tuberosum HOM05D000184 ORTHO05D000032 1.6e-21 107.1 184 47.3
PSO782G2787 Papaver somniferum HOM05D000184 ORTHO05D000032 2.1e-21 106.7 179 45.3
Gohir.D08G172800 Gossypium hirsutum HOM05D000184 ORTHO05D000032 2.7e-21 106.3 179 47.5
Solyc08g076010.4 Solanum lycopersicum HOM05D000184 ORTHO05D000032 2.7e-21 106.3 186 46.2
Peaxi162Scf00185g01625 Petunia axillaris HOM05D000184 ORTHO05D000032 4.7e-21 105.5 172 48.8
Sopen08g024650 Solanum pennellii HOM05D000184 ORTHO05D000032 4.7e-21 105.5 186 46.2
Gohir.A08G151700 Gossypium hirsutum HOM05D000184 ORTHO05D000032 1.0e-20 104.4 177 47.5
Ca_25145_v3 Cicer arietinum L. HOM05D000184 ORTHO05D000032 1.4e-20 104.0 177 48.6
Gorai.004G180000 Gossypium raimondii HOM05D000184 ORTHO05D000032 1.4e-20 104.0 177 47.5
Sabra01G0102900 Salix brachista HOM05D000184 ORTHO05D000032 1.4e-20 104.0 161 40.4
MBI04_g27272_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 2.3e-20 103.2 160 51.2
Manes.17G009200 Manihot esculenta HOM05D000184 ORTHO05D000032 2.3e-20 103.2 175 47.4
Migut.A00576 Erythranthe guttata HOM05D000184 ORTHO05D000032 1.1e-19 100.9 181 46.4
Lj7A133G23 Lonicera japonica HOM05D000184 ORTHO05D000032 2.0e-19 100.1 111 52.3
Medtr5g027440 Medicago truncatula HOM05D000184 ORTHO05D000032 2.0e-19 100.1 176 47.2
Nitab4.5_0000109g0160 Nicotiana tabacum HOM05D000184 ORTHO05D000032 2.0e-19 100.1 183 45.9
CSS0041856 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 9.7e-19 97.8 112 62.5
Eucgr.D02611 Eucalyptus grandis HOM05D000184 ORTHO05D000032 9.7e-19 97.8 187 43.3
CAN.G773.5 Capsicum annuum HOM05D000184 ORTHO05D000032 1.3e-18 97.4 180 44.4
Nitab4.5_0000543g0010 Nicotiana tabacum HOM05D000184 ORTHO05D000032 1.7e-18 97.1 167 49.1
Nitab4.5_0002735g0040 Nicotiana tabacum HOM05D000184 ORTHO05D000032 1.7e-18 97.1 189 46.0
Nn3g19265 Nelumbo nucifera HOM05D000184 ORTHO05D000032 2.4e-17 93.2 170 47.6
Os02g0700300 Oryza sativa ssp. japonica HOM05D000184 ORTHO05D000032 2.4e-17 93.2 171 47.4
Psat2g140880 Pisum sativum HOM05D000184 ORTHO05D000032 2.4e-17 93.2 178 45.5
Lalb_Chr05g0215541 Lupinus albus HOM05D000184 ORTHO05D000032 9.1e-17 91.3 178 45.5
arahy.Tifrunner.gnm1.ann1.T0KD2M Arachis hypogaea HOM05D014240 ORTHO05D016630 1.2e-16 90.9 160 38.8
Peaxi162Scf00408g00321 Petunia axillaris HOM05D000184 ORTHO05D000032 1.5e-16 90.5 154 46.8
Zm00001eb251670 Zea mays HOM05D000184 ORTHO05D000032 2.6e-16 89.7 152 48.7
PGR031G0882 Punica granatum HOM05D000184 ORTHO05D000032 5.9e-16 88.6 186 44.1
Migut.M00636 Erythranthe guttata HOM05D000184 ORTHO05D000032 1.3e-15 87.4 158 46.2
PGSC0003DMG400020455 Solanum tuberosum HOM05D000184 ORTHO05D000032 1.3e-15 87.4 167 43.7
Migut.N00196 Erythranthe guttata HOM05D000184 ORTHO05D000032 1.7e-15 87.0 145 48.3
Aqoxy3G02059 Aquilegia oxysepala HOM05D000184 ORTHO05D000032 2.2e-15 86.7 130 54.6
Aa31LG9G7460 Aethionema arabicum HOM05D000184 ORTHO05D000032 2.9e-15 86.3 183 39.9
arahy.Tifrunner.gnm1.ann1.FF6Y25 Arachis hypogaea HOM05D014240 ORTHO05D016630 2.9e-15 86.3 88 50.0
AT5G45580 Arabidopsis thaliana HOM05D000184 ORTHO05D000032 3.8e-15 85.9 183 42.1
BcaC06g31540 Brassica carinata HOM05D000184 ORTHO05D000032 1.5e-14 84.0 182 40.1
Carub.0008s0245 Capsella rubella HOM05D000184 ORTHO05D000032 1.5e-14 84.0 183 39.3
CSS0023343 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 2.5e-14 83.2 112 59.8
CsaV3_3G030370 Cucumis sativus L. HOM05D000184 ORTHO05D000032 2.5e-14 83.2 172 30.8
SalBow4G1017 Salvia bowleyana HOM05D000184 ORTHO05D000032 2.5e-14 83.2 164 45.1
AL8G13100 Arabidopsis lyrata HOM05D000184 ORTHO05D000032 4.2e-14 82.4 183 41.5
Peaxi162Scf00615g00011 Petunia axillaris HOM05D000184 ORTHO05D000032 4.2e-14 82.4 108 62.0
BcaC06g34425 Brassica carinata HOM05D000184 ORTHO05D000032 5.5e-14 82.0 185 40.5
A06p46530 Brassica napus HOM05D000184 ORTHO05D000032 9.4e-14 81.3 182 40.1
BraA06t27527Z Brassica rapa HOM05D000184 ORTHO05D000032 9.4e-14 81.3 182 40.1
C07p28640 Brassica napus HOM05D000184 ORTHO05D000032 1.2e-13 80.9 185 40.5
BolC7t43403H Brassica oleracea HOM05D000184 ORTHO05D000032 1.2e-13 80.9 185 40.5
ClCG07G002310 Citrullus lanatus HOM05D000184 ORTHO05D000032 1.2e-13 80.9 160 33.1
Migut.B00920 Erythranthe guttata HOM05D000184 ORTHO05D000032 1.6e-13 80.5 110 56.4
MELO3C022765.2 Cucumis melo HOM05D000184 ORTHO05D000032 2.1e-13 80.1 167 32.9
Thhalv10001175m.g Eutrema salsugineum HOM05D000184 ORTHO05D000032 1.4e-12 77.4 186 39.8
Sed0011222 Sechium edule HOM05D000184 ORTHO05D000032 3.9e-12 75.9 168 42.9
Sopen06g024660 Solanum pennellii HOM05D000184 ORTHO05D000032 3.9e-12 75.9 167 43.1
arahy.Tifrunner.gnm1.ann1.T6PNKD Arachis hypogaea HOM05D014240 ORTHO05D016630 6.7e-12 75.1 154 35.7
Oeu038594.1 Olea europaea HOM05D000184 ORTHO05D000032 6.7e-12 75.1 165 42.4
CAN.G1230.17 Capsicum annuum HOM05D000184 ORTHO05D000032 8.8e-12 74.7 157 44.6
Migut.K00642 Erythranthe guttata HOM05D000184 ORTHO05D000032 8.8e-12 74.7 96 60.4
Sp2g10470 Schrenkiella parvula HOM05D000184 ORTHO05D000032 2.0e-11 73.6 182 37.9
THA.LOC104798458 Tarenaya hassleriana HOM05D000184 ORTHO05D000032 7.4e-11 71.6 171 39.2
CARHR176450 Cardamine hirsuta HOM05D000184 ORTHO05D000032 9.7e-11 71.2 183 39.3
arahy.Tifrunner.gnm1.ann1.7LC16L Arachis hypogaea HOM05D014240 ORTHO05D016630 8.2e-10 68.2 70 54.3
Nitab4.5_0004835g0040 Nicotiana tabacum HOM05D000184 ORTHO05D000032 1.8e-09 67.0 181 30.9
Zm00001eb071920 Zea mays HOM05D000184 ORTHO05D000032 2.4e-09 66.6 162 45.1
Ah.07g201330 Amaranthus hybridus HOM05D000184 ORTHO05D000032 2.6e-08 63.2 85 62.4
Gorai.008G221900 Gossypium raimondii HOM05D000184 ORTHO05D000032 1.3e-07 60.8 160 41.9
Gohir.D12G206633 Gossypium hirsutum HOM05D000184 ORTHO05D000032 2.2e-07 60.1 160 41.9
Duzib068G1271 Durio zibethinus HOM05D000184 ORTHO05D000032 6.5e-07 58.5 102 55.9
Dinv29045 Davidia involucrata HOM05D000184 ORTHO05D000032 4.2e-06 55.8 47 55.3


User provided reference genes

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