Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2605 Fragaria x ananassa HOM05D014858 ORTHO05D210715 1.2e-44 183.7 170 100.0
FAN13G1279 Fragaria x ananassa HOM05D014858 ORTHO05D199372 7.3e-31 137.9 149 94.0
FAN25G0704 Fragaria x ananassa HOM05D014858 ORTHO05D201285 2.8e-30 136.0 149 72.5
FAN01G1340 Fragaria x ananassa HOM05D014858 ORTHO05D000020 1.1e-23 114.0 61 96.7
FAN05G0298 Fragaria x ananassa HOM05D000233 ORTHO05D000020 1.1e-23 114.0 61 96.7
FAN06G5058 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.1e-23 114.0 61 96.7
FAN20G2706 Fragaria x ananassa HOM05D014858 ORTHO05D000020 1.1e-23 114.0 61 96.7
FAN24G2607 Fragaria x ananassa HOM05D014858 ORTHO05D210896 1.1e-23 114.0 151 70.9
FAN27G2930 Fragaria x ananassa HOM05D014858 ORTHO05D000020 3.3e-23 112.5 61 95.1
FAN17G2700 Fragaria x ananassa HOM05D014858 ORTHO05D000020 6.2e-22 108.2 61 93.4
FAN26G2611 Fragaria x ananassa HOM05D009706 ORTHO05D009452 9.9e-20 100.9 53 96.2
FvH4_3g34800 Fragaria vesca HOM05D000016 ORTHO05D000433 1.0e-16 90.9 48 95.8
FAN02G2059 Fragaria x ananassa HOM05D000040 ORTHO05D011413 1.0e-16 90.9 48 95.8
FAN05G0053 Fragaria x ananassa HOM05D000040 ORTHO05D011413 1.0e-16 90.9 48 95.8
FAN11G3203 Fragaria x ananassa HOM05D000016 ORTHO05D000433 1.0e-16 90.9 48 95.8
FAN16G2631 Fragaria x ananassa HOM05D000016 ORTHO05D000433 1.0e-16 90.9 48 95.8
FAN21G0509 Fragaria x ananassa HOM05D000016 ORTHO05D011413 1.0e-16 90.9 48 95.8
FAN21G1799 Fragaria x ananassa HOM05D000016 ORTHO05D000433 1.0e-16 90.9 48 95.8
FAN24G3545 Fragaria x ananassa HOM05D000025 ORTHO05D011413 1.0e-16 90.9 48 95.8
FvH4_5g35160 Fragaria vesca HOM05D000016 ORTHO05D000433 1.1e-15 87.4 52 82.7
FAN04G0679 Fragaria x ananassa HOM05D000016 ORTHO05D000433 1.1e-15 87.4 52 82.7
FAN13G0484 Fragaria x ananassa HOM05D000016 ORTHO05D000433 1.1e-15 87.4 52 82.7
FAN18G0196 Fragaria x ananassa HOM05D000016 ORTHO05D000433 1.1e-15 87.4 52 82.7
FAN22G0248 Fragaria x ananassa HOM05D000016 ORTHO05D011413 1.5e-15 87.0 48 91.7
FAN08G2477 Fragaria x ananassa HOM05D000016 ORTHO05D000433 5.6e-15 85.1 51 82.4
RcHm_v2.0_Chr5g0062571 Rosa chinensis HOM05D000016 ORTHO05D000433 7.3e-15 84.7 48 89.6
FAN03G1218 Fragaria x ananassa HOM05D000016 ORTHO05D000433 1.3e-14 84.0 48 91.7
FAN05G4682 Fragaria x ananassa HOM05D000025 ORTHO05D011413 1.3e-14 84.0 48 91.7
FAN11G0027 Fragaria x ananassa HOM05D018336 ORTHO05D011413 1.3e-14 84.0 48 91.7
FAN18G3126 Fragaria x ananassa HOM05D000025 ORTHO05D011413 1.3e-14 84.0 48 91.7
FAN23G0438 Fragaria x ananassa HOM05D000025 ORTHO05D011413 2.8e-14 82.8 48 89.6
FAN02G3969 Fragaria x ananassa HOM05D000025 ORTHO05D011413 5.3e-13 78.6 48 87.5
FAN03G2530 Fragaria x ananassa HOM05D000025 ORTHO05D011413 5.3e-13 78.6 48 87.5
FAN10G4215 Fragaria x ananassa HOM05D000025 ORTHO05D011413 5.3e-13 78.6 48 87.5
FvH4_5g35140 Fragaria vesca HOM05D000016 ORTHO05D000433 7.6e-12 74.7 52 69.2
FAN04G0944 Fragaria x ananassa HOM05D000016 ORTHO05D000433 7.6e-12 74.7 52 69.2
FAN18G1767 Fragaria x ananassa HOM05D000016 ORTHO05D000433 7.6e-12 74.7 52 69.2
MD11G1115200 Malus domestica HOM05D000016 ORTHO05D000433 2.2e-11 73.2 52 63.5
FAN06G1405 Fragaria x ananassa HOM05D000016 ORTHO05D000433 2.9e-11 72.8 52 63.5
FAN14G3912 Fragaria x ananassa HOM05D000016 ORTHO05D000433 2.9e-11 72.8 52 63.5
MD03G1101300 Malus domestica HOM05D000016 ORTHO05D000433 4.9e-11 72.0 44 75.0
FvH4_6g14450 Fragaria vesca HOM05D000016 ORTHO05D000433 6.4e-11 71.6 52 63.5
FvH4_7g16600 Fragaria vesca HOM05D000016 ORTHO05D000433 6.4e-11 71.6 52 63.5
RcHm_v2.0_Chr5g0062591 Rosa chinensis HOM05D000016 ORTHO05D000433 1.9e-10 70.1 47 68.1
MD11G1115400 Malus domestica HOM05D000016 ORTHO05D000433 5.4e-10 68.6 52 61.5
FAN05G1759 Fragaria x ananassa HOM05D000025 ORTHO05D011413 7.1e-10 68.2 51 58.8
Prupe.6G086200 Prunus persica HOM05D000016 ORTHO05D000433 7.1e-10 68.2 48 64.6
Rhsim13G0087600 Rhododendron simsii HOM05D000016 ORTHO05D000433 7.1e-10 68.2 52 57.7
Thecc.08G188600 Theobroma cacao HOM05D000016 ORTHO05D000433 1.2e-09 67.4 52 61.5
CSS0007273 Camellia sinensis var. sinensis HOM05D000016 ORTHO05D000433 4.6e-09 65.5 52 57.7
Cc01_g12200 Coffea canephora HOM05D000016 ORTHO05D000433 4.6e-09 65.5 52 61.5
Prupe.6G007200 Prunus persica HOM05D000016 ORTHO05D000433 6.0e-09 65.1 52 59.6
CSS0006273 Camellia sinensis var. sinensis HOM05D000016 ORTHO05D000433 1.0e-08 64.3 52 55.8
Gohir.A09G199200 Gossypium hirsutum HOM05D000016 ORTHO05D000433 1.8e-08 63.5 52 61.5
Manes.07G003300 Manihot esculenta HOM05D000016 ORTHO05D000433 3.0e-08 62.8 51 62.7
Prupe.6G086500 Prunus persica HOM05D000016 ORTHO05D000433 3.0e-08 62.8 51 58.8
SGA_v2.0_scaffold134G34738 Striga asiatica HOM05D000016 ORTHO05D000433 3.0e-08 62.8 52 55.8
Gohir.A13G120300 Gossypium hirsutum HOM05D000016 ORTHO05D000433 3.9e-08 62.4 48 62.5
Gohir.D09G193501 Gossypium hirsutum HOM05D000016 ORTHO05D000433 3.9e-08 62.4 52 59.6
Gorai.006G217000 Gossypium raimondii HOM05D000016 ORTHO05D000433 3.9e-08 62.4 52 59.6
Gorai.013G141500 Gossypium raimondii HOM05D000016 ORTHO05D000433 3.9e-08 62.4 48 62.5
PGR102G2875 Punica granatum HOM05D000016 ORTHO05D000433 3.9e-08 62.4 48 58.3
SGA_v2.0_scaffold134G34717 Striga asiatica HOM05D000016 ORTHO05D000433 3.9e-08 62.4 52 55.8
Atru.chr13.2623 Acer truncatum HOM05D000016 ORTHO05D000433 5.1e-08 62.0 52 55.8
MSTRG.21179 Avicennia marina HOM05D000016 ORTHO05D000433 5.1e-08 62.0 51 52.9
unitig_0.g1549 Utricularia gibba HOM05D000016 ORTHO05D000433 5.1e-08 62.0 51 56.9
Haze_24018 Corylus avellana HOM05D000016 ORTHO05D000433 6.7e-08 61.6 52 57.7
Gohir.D13G126200 Gossypium hirsutum HOM05D000016 ORTHO05D000433 8.7e-08 61.2 48 60.4
Duzib168G2299 Durio zibethinus HOM05D000016 ORTHO05D000433 1.1e-07 60.8 52 61.5
Cfa011435 Carpinus fangiana HOM05D000016 ORTHO05D000433 1.5e-07 60.5 52 55.8
Migut.D02138 Erythranthe guttata HOM05D000016 ORTHO05D000433 1.5e-07 60.5 52 55.8
Potri.013G027000 Populus trichocarpa HOM05D000016 ORTHO05D000433 1.5e-07 60.5 52 51.9
Sabra13G0027700 Salix brachista HOM05D000016 ORTHO05D000433 1.5e-07 60.5 52 51.9
FvH4_6g22820 Fragaria vesca HOM05D000016 ORTHO05D000433 1.9e-07 60.1 52 59.6
FAN05G0169 Fragaria x ananassa HOM05D000016 ORTHO05D000433 1.9e-07 60.1 52 59.6
FAN14G1982 Fragaria x ananassa HOM05D000016 ORTHO05D000433 1.9e-07 60.1 52 59.6
Manes.04G030000 Manihot esculenta HOM05D000016 ORTHO05D000433 1.9e-07 60.1 52 51.9
RcHm_v2.0_Chr3g0480431 Rosa chinensis HOM05D000016 ORTHO05D000433 1.9e-07 60.1 52 59.6
Thecc.05G167000 Theobroma cacao HOM05D000016 ORTHO05D000433 1.9e-07 60.1 52 57.7
Cfa011432 Carpinus fangiana HOM05D000016 ORTHO05D000433 2.5e-07 59.7 52 53.8
Cfa011433 Carpinus fangiana HOM05D000016 ORTHO05D000433 2.5e-07 59.7 52 53.8
PGR083G1665 Punica granatum HOM05D000016 ORTHO05D000433 2.5e-07 59.7 48 58.3
arahy.Tifrunner.gnm1.ann1.QM5IC5 Arachis hypogaea HOM05D000016 ORTHO05D000433 3.3e-07 59.3 42 61.9
CiPaw.09G032900 Carya illinoinensis HOM05D000016 ORTHO05D000433 3.3e-07 59.3 52 55.8
Gohir.A01G194900 Gossypium hirsutum HOM05D000016 ORTHO05D000433 3.3e-07 59.3 49 61.2
Lsat_1_v5_gn_9_70860 Lactuca sativa HOM05D000016 ORTHO05D000433 3.3e-07 59.3 52 50.0
Gohir.D01G185100 Gossypium hirsutum HOM05D000016 ORTHO05D000433 4.3e-07 58.9 53 56.6
Gorai.002G228600 Gossypium raimondii HOM05D000016 ORTHO05D000433 4.3e-07 58.9 53 56.6
Nitab4.5_0015910g0010 Nicotiana tabacum HOM05D000016 ORTHO05D000433 4.3e-07 58.9 53 54.7
PGSC0003DMG400041100 Solanum tuberosum HOM05D000016 ORTHO05D000433 4.3e-07 58.9 42 61.9
COL.COLO4_10053 Corchorus olitorius HOM05D000016 ORTHO05D000433 5.6e-07 58.5 52 57.7
COL.COLO4_15745 Corchorus olitorius HOM05D000016 ORTHO05D000433 5.6e-07 58.5 52 53.8
Gohir.A13G122266 Gossypium hirsutum HOM05D000016 ORTHO05D000433 5.6e-07 58.5 48 60.4
ECA232G3518 Erigeron canadensis HOM05D000016 ORTHO05D000433 7.4e-07 58.2 48 56.2
Nitab4.5_0002686g0040 Nicotiana tabacum HOM05D000016 ORTHO05D000433 7.4e-07 58.2 43 58.1
Nitab4.5_0002844g0030 Nicotiana tabacum HOM05D000016 ORTHO05D000433 7.4e-07 58.2 43 58.1
Potri.016G049800 Populus trichocarpa HOM05D000016 ORTHO05D000433 7.4e-07 58.2 52 57.7
Thecc.08G196100 Theobroma cacao HOM05D000016 ORTHO05D000433 7.4e-07 58.2 52 53.8
TWI74G1074 Tripterygium wilfordii HOM05D000016 ORTHO05D000433 7.4e-07 58.2 52 57.7
GSVIVG01033368001 Vitis vinifera HOM05D000016 ORTHO05D000433 7.4e-07 58.2 48 60.4
CiPaw.14G073100 Carya illinoinensis HOM05D000016 ORTHO05D000433 9.6e-07 57.8 52 53.8
CAN.G1377.8 Capsicum annuum HOM05D000016 ORTHO05D000433 1.3e-06 57.4 42 59.5
MELO3C023178.2 Cucumis melo HOM05D000016 ORTHO05D000433 1.3e-06 57.4 53 56.6
FvH4_6g14541 Fragaria vesca HOM05D000016 ORTHO05D000433 1.3e-06 57.4 45 57.8
MD14G1063000 Malus domestica HOM05D000016 ORTHO05D000433 1.3e-06 57.4 52 57.7
Peaxi162Scf00032g01511 Petunia axillaris HOM05D000016 ORTHO05D000433 1.3e-06 57.4 41 61.0
Peaxi162Scf00285g00428 Petunia axillaris HOM05D000016 ORTHO05D000433 1.6e-06 57.0 52 55.8
Potri.005G037100 Populus trichocarpa HOM05D000016 ORTHO05D000433 1.6e-06 57.0 56 50.0
Potri.005G037201 Populus trichocarpa HOM05D000016 ORTHO05D000433 1.6e-06 57.0 56 50.0
arahy.Tifrunner.gnm1.ann1.WR94UY Arachis hypogaea HOM05D000016 ORTHO05D000433 2.1e-06 56.6 53 54.7
Eucgr.B02408 Eucalyptus grandis HOM05D000016 ORTHO05D000433 2.1e-06 56.6 61 49.2
Eucgr.B02410 Eucalyptus grandis HOM05D000016 ORTHO05D000433 2.1e-06 56.6 61 49.2
Sopen01g005880 Solanum pennellii HOM05D000016 ORTHO05D000433 2.1e-06 56.6 42 57.1
Duzib093G0629 Durio zibethinus HOM05D000016 ORTHO05D000433 2.8e-06 56.2 52 55.8
Glyma.03G142000 Glycine max HOM05D000016 ORTHO05D000433 2.8e-06 56.2 52 55.8
Nitab4.5_0002464g0020 Nicotiana tabacum HOM05D000025 ORTHO05D011413 2.8e-06 56.2 53 52.8
Solyc01g010260.3 Solanum lycopersicum HOM05D000016 ORTHO05D000433 2.8e-06 56.2 42 54.8
PSO339G0698 Papaver somniferum HOM05D000016 ORTHO05D000433 3.7e-06 55.8 44 59.1
Sabra06G0041600 Salix brachista HOM05D000016 ORTHO05D000433 3.7e-06 55.8 52 55.8
Oeu045359.1 Olea europaea HOM05D000016 ORTHO05D000433 4.8e-06 55.5 53 54.7
Prupe.7G072200 Prunus persica HOM05D000016 ORTHO05D000433 4.8e-06 55.5 52 55.8
Cpa.g.sc85.107 Carica papaya HOM05D000016 ORTHO05D000433 6.2e-06 55.1 52 55.8
Cc06_g16330 Coffea canephora HOM05D000016 ORTHO05D000433 6.2e-06 55.1 52 53.8
Lalb_Chr19g0137641 Lupinus albus HOM05D000025 ORTHO05D011413 6.2e-06 55.1 46 58.7
Manes.09G031200 Manihot esculenta HOM05D000016 ORTHO05D000433 6.2e-06 55.1 52 55.8
Medtr8g468780 Medicago truncatula HOM05D000016 ORTHO05D000433 6.2e-06 55.1 42 61.9
Nitab4.5_0010027g0010 Nicotiana tabacum HOM05D000016 ORTHO05D000433 6.2e-06 55.1 42 59.5
Atru.chr6.1983 Acer truncatum HOM05D000016 ORTHO05D000433 8.1e-06 54.7 48 58.3
Atru.chr6.2002 Acer truncatum HOM05D000016 ORTHO05D000433 8.1e-06 54.7 48 58.3
Dinv24102 Davidia involucrata HOM05D000016 ORTHO05D000433 8.1e-06 54.7 52 53.8
Dinv24107 Davidia involucrata HOM05D000016 ORTHO05D000433 8.1e-06 54.7 52 53.8
Medtr4g062530 Medicago truncatula HOM05D000016 ORTHO05D000433 8.1e-06 54.7 47 48.9
Nitab4.5_0000016g0120 Nicotiana tabacum HOM05D000016 ORTHO05D000433 8.1e-06 54.7 42 59.5
TPR.G4755 Trifolium pratense HOM05D000016 ORTHO05D000433 8.1e-06 54.7 52 53.8
VMungo1383G0147 Vigna mungo HOM05D000016 ORTHO05D000433 8.1e-06 54.7 42 57.1


User provided reference genes

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