Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2527 Fragaria x ananassa HOM05D003325 ORTHO05D003852 3.6e-112 408.3 211 100.0
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 3.2e-100 368.6 210 91.0
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 2.0e-99 365.9 210 90.0
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.7e-99 365.5 210 89.5
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.1e-97 360.1 210 88.6
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 8.1e-80 300.8 193 78.8
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 8.1e-56 221.1 210 55.7
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 4.5e-54 215.3 202 55.4
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 6.0e-51 204.9 188 55.9
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 6.0e-51 204.9 210 50.5
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 7.9e-51 204.5 204 53.9
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 1.5e-49 200.3 175 56.0
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 1.5e-49 200.3 175 56.0
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 2.5e-44 183.0 195 52.3
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 3.2e-44 182.6 171 56.1
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 4.2e-44 182.2 191 50.8
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 2.1e-43 179.9 165 56.4
QL03p041468 Quercus lobata HOM05D003325 ORTHO05D003852 2.1e-43 179.9 176 52.3
Dinv23165 Davidia involucrata HOM05D003325 ORTHO05D003852 2.7e-43 179.5 171 53.2
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 1.3e-42 177.2 185 50.8
VMungo1309G1507 Vigna mungo HOM05D003325 ORTHO05D003852 8.7e-42 174.5 188 50.5
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 1.9e-41 173.3 188 52.1
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 2.5e-41 172.9 185 51.4
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 2.5e-41 172.9 170 52.9
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 5.7e-41 171.8 187 51.3
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 9.7e-41 171.0 188 50.0
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 1.3e-40 170.6 177 51.4
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 1.6e-40 170.2 187 49.7
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 1.6e-40 170.2 172 51.7
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 3.7e-40 169.1 176 51.7
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 2.4e-39 166.4 178 49.4
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 3.1e-39 166.0 166 49.4
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 5.3e-39 165.2 182 50.0
Lj5A94T49 Lonicera japonica HOM05D003325 ORTHO05D003852 5.3e-39 165.2 165 50.3
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 5.3e-39 165.2 193 47.7
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 5.3e-39 165.2 182 51.6
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 5.3e-39 165.2 191 50.8
Ciclev10033680m.g Citrus clementina HOM05D003325 ORTHO05D003852 6.9e-39 164.9 169 52.1
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 6.9e-39 164.9 179 50.8
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 9.0e-39 164.5 171 49.7
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 9.0e-39 164.5 183 47.0
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 1.2e-38 164.1 193 46.6
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 1.5e-38 163.7 162 53.1
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 2.0e-38 163.3 186 49.5
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 5.9e-38 161.8 189 50.3
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 5.9e-38 161.8 177 49.2
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 7.7e-38 161.4 185 48.1
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 1.0e-37 161.0 183 50.3
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 1.3e-37 160.6 167 47.9
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 1.7e-37 160.2 184 51.6
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 1.7e-37 160.2 168 51.8
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 2.2e-37 159.8 184 51.6
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.9e-37 159.5 181 49.7
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 3.8e-37 159.1 165 47.9
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 5.0e-37 158.7 182 47.3
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 5.0e-37 158.7 182 47.3
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 8.5e-37 157.9 182 47.3
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 8.5e-37 157.9 202 44.6
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.1e-36 157.5 192 46.4
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 1.4e-36 157.1 200 46.5
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.4e-36 157.1 180 49.4
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 1.9e-36 156.8 191 45.5
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 1.9e-36 156.8 181 47.5
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 2.5e-36 156.4 165 50.3
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 2.5e-36 156.4 180 49.4
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 9.4e-36 154.5 165 50.9
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 1.6e-35 153.7 178 44.9
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 1.6e-35 153.7 181 44.8
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 2.1e-35 153.3 180 45.6
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.1e-35 153.3 165 51.5
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 2.1e-35 153.3 169 50.3
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 2.7e-35 152.9 202 45.0
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 3.6e-35 152.5 177 48.6
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 3.6e-35 152.5 163 51.5
EL10Ac5g11389 Beta vulgaris HOM05D003325 ORTHO05D003852 7.9e-35 151.4 168 48.2
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 7.9e-35 151.4 163 47.9
Migut.N02143 Erythranthe guttata HOM05D003325 ORTHO05D003852 1.0e-34 151.0 172 45.3
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 1.0e-34 151.0 159 48.4
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 1.0e-34 151.0 182 43.4
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 1.4e-34 150.6 167 47.9
Potri.012G100600 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.4e-34 150.6 178 45.5
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.4e-34 150.6 182 43.4
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.4e-34 150.6 175 44.6
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.8e-34 150.2 186 44.6
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 6.7e-34 148.3 163 47.9
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 6.7e-34 148.3 165 45.5
COL.COLO4_07119 Corchorus olitorius HOM05D003325 ORTHO05D003852 8.8e-34 147.9 180 45.6
Sabra12G0073900 Salix brachista HOM05D003325 ORTHO05D003852 1.5e-33 147.1 164 46.3
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 2.0e-33 146.7 188 45.2
AT5G63520 Arabidopsis thaliana HOM05D003325 ORTHO05D003852 3.3e-33 146.0 178 46.6
THA.LOC104798939 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 3.3e-33 146.0 164 47.6
QL03p041488 Quercus lobata HOM05D003325 ORTHO05D003852 5.7e-33 145.2 194 41.8
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 1.3e-32 144.1 185 41.6
Migut.N02169 Erythranthe guttata HOM05D003325 ORTHO05D003852 1.7e-32 143.7 165 44.8
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 1.7e-32 143.7 165 44.2
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 2.2e-32 143.3 193 43.5
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 2.2e-32 143.3 172 46.5
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 4.8e-32 142.1 175 46.3
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 4.8e-32 142.1 173 43.4
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 8.2e-32 141.4 174 44.3
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 1.4e-31 140.6 182 45.6
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 1.8e-31 140.2 180 42.8
THA.LOC104798940 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 2.4e-31 139.8 166 42.8
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 3.1e-31 139.4 181 44.8
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 3.1e-31 139.4 181 44.8
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 3.1e-31 139.4 181 43.1
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 5.3e-31 138.7 177 42.9
Thhalv10004000m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 6.9e-31 138.3 178 41.6
Sc10g0010530 Simmondsia chinensis HOM05D003325 ORTHO05D003852 6.9e-31 138.3 179 42.5
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 9.1e-31 137.9 180 42.8
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 9.1e-31 137.9 182 42.9
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 1.5e-30 137.1 173 45.1
HanXRQChr13g0407821 Helianthus annuus HOM05D003325 ORTHO05D003852 2.6e-30 136.3 183 44.8
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 2.6e-30 136.3 214 39.7
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 5.9e-30 135.2 173 42.8
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 1.0e-29 134.4 166 45.8
ATR0561G074 Amborella trichopoda HOM05D003325 ORTHO05D003852 1.3e-29 134.0 170 42.4
ATR0561G042 Amborella trichopoda HOM05D003325 ORTHO05D003852 2.2e-29 133.3 190 40.0
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 2.2e-29 133.3 178 42.7
MD06G1139500 Malus domestica HOM05D003325 ORTHO05D003852 3.8e-29 132.5 118 58.5
Prupe.5G149100 Prunus persica HOM05D003325 ORTHO05D003852 3.8e-29 132.5 168 42.3
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 1.4e-28 130.6 173 42.2
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 1.4e-28 130.6 173 42.2
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 1.4e-28 130.6 174 42.5
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 1.9e-28 130.2 166 42.8
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 4.2e-28 129.0 167 43.7
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 5.5e-28 128.6 161 46.0
Migut.O00357 Erythranthe guttata HOM05D003325 ORTHO05D003852 9.4e-28 127.9 163 42.3
A06p30150 Brassica napus HOM05D003325 ORTHO05D003852 1.2e-27 127.5 166 39.8
BraA06t25966Z Brassica rapa HOM05D003325 ORTHO05D003852 1.2e-27 127.5 166 39.8
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 1.2e-27 127.5 173 44.5
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 2.7e-27 126.3 173 41.6
BcaC01g06930 Brassica carinata HOM05D003325 ORTHO05D003852 7.9e-27 124.8 166 38.6
C03p62920 Brassica napus HOM05D003325 ORTHO05D003852 7.9e-27 124.8 166 38.6
BolC3t18546H Brassica oleracea HOM05D003325 ORTHO05D003852 1.4e-26 124.0 166 38.0
BcaB02g09754 Brassica carinata HOM05D003325 ORTHO05D003852 3.0e-26 122.9 167 40.7
Migut.I00368 Erythranthe guttata HOM05D003325 ORTHO05D003852 3.0e-26 122.9 165 43.0
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 5.1e-26 122.1 188 42.0
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 5.1e-26 122.1 162 44.4
HanXRQChr13g0408761 Helianthus annuus HOM05D003325 ORTHO05D003852 1.1e-25 120.9 141 47.5
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 1.5e-25 120.6 207 36.7
HanXRQChr13g0408751 Helianthus annuus HOM05D003325 ORTHO05D003852 3.3e-25 119.4 145 46.2
Migut.K00759 Erythranthe guttata HOM05D003325 ORTHO05D003852 5.7e-25 118.6 163 40.5
Oeu061143.2 Olea europaea HOM05D003325 ORTHO05D003852 1.7e-24 117.1 226 33.6
AUR62038854 Chenopodium quinoa HOM05D003325 ORTHO05D003852 2.8e-24 116.3 134 45.5
HanXRQChr04g0099651 Helianthus annuus HOM05D003325 ORTHO05D003852 8.2e-24 114.8 225 35.6
FAN04G2439 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.4e-23 114.0 180 38.3
FAN18G2108 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.8e-23 113.6 176 38.1
FvH4_5g08570 Fragaria vesca HOM05D003325 ORTHO05D003852 2.4e-23 113.2 176 38.1
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 2.4e-23 113.2 119 53.8
MD14G1155100 Malus domestica HOM05D003325 ORTHO05D003852 9.1e-23 111.3 142 39.4
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 3.5e-22 109.4 183 39.3
HanXRQChr13g0408791 Helianthus annuus HOM05D003325 ORTHO05D003852 4.5e-22 109.0 194 37.1
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 5.9e-22 108.6 157 40.8
Peaxi162Scf00130g00520 Petunia axillaris HOM05D003325 ORTHO05D003852 5.0e-21 105.5 186 35.5
ClCG03G003870 Citrullus lanatus HOM05D003325 ORTHO05D003852 2.1e-19 100.1 82 63.4
DCAR_021629 Daucus carota HOM05D003325 ORTHO05D003852 6.1e-19 98.6 140 44.3
MD06G1139600 Malus domestica HOM05D003325 ORTHO05D003852 2.2e-16 90.1 77 53.2
AUR62029583 Chenopodium quinoa HOM05D003325 ORTHO05D003852 3.7e-16 89.4 181 33.7
Aqoxy1G03157 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 7.7e-14 81.6 71 54.9
Aqoxy1G03342 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 7.7e-14 81.6 71 54.9
ATR0561G235 Amborella trichopoda HOM05D003325 ORTHO05D003852 1.7e-13 80.5 94 44.7
Aqoxy2G00205 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 1.7e-13 80.5 71 54.9
SEGI_12810 Sequoiadendron giganteum HOM05D003325 ORTHO05D003852 7.2e-12 75.1 107 39.3
AL3G40400 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 9.4e-12 74.7 69 53.6
arahy.Tifrunner.gnm1.ann1.RXUH3Q Arachis hypogaea HOM05D016848 ORTHO05D014290 8.8e-10 68.2 62 53.2
FAN13G1110 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.6e-09 66.6 58 53.4
Mapoly0019s0043 Marchantia polymorpha HOM05D003325 ORTHO05D003852 3.4e-09 66.2 168 29.8
HanXRQChr04g0099631 Helianthus annuus HOM05D003325 ORTHO05D003852 2.4e-07 60.1 116 36.2
Nitab4.5_0007721g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 4.1e-07 59.3 74 40.5
arahy.Tifrunner.gnm1.ann1.J3UYEB Arachis hypogaea HOM05D003325 ORTHO05D003852 9.1e-07 58.2 41 68.3
HanXRQChr04g0099641 Helianthus annuus HOM05D003325 ORTHO05D003852 9.1e-07 58.2 86 43.0
MD06G1138900 Malus domestica HOM05D003325 ORTHO05D003852 2.0e-06 57.0 67 44.8
arahy.Tifrunner.gnm1.ann1.J64BKK Arachis hypogaea HOM05D000915 ORTHO05D084760 7.7e-06 55.1 34 76.5


User provided reference genes

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