Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1409.4 711 100.0
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1299.3 774 88.1
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 0.0e+00 1296.6 786 86.9
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1295.8 786 86.9
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1295.4 758 89.2
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1230.3 770 83.2
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1104.4 774 75.1
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 0.0e+00 1082.0 774 74.2
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1077.0 774 73.1
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 2.6e-303 1045.0 775 71.4
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 1.7e-302 1042.3 775 71.6
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 2.2e-302 1042.0 775 72.1
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 8.2e-302 1040.0 774 70.9
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 1.2e-300 1036.2 774 70.3
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 3.3e-295 1018.1 774 69.4
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 4.4e-295 1017.7 774 69.5
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 9.7e-295 1016.5 775 69.4
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 2.4e-293 1011.9 774 68.7
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 3.1e-293 1011.5 773 69.0
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 3.1e-293 1011.5 773 69.9
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 2.9e-291 1005.0 775 68.1
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.1e-290 1003.0 767 68.1
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 7.2e-290 1000.3 773 68.8
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 2.7e-289 998.4 776 68.2
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 1.4e-288 996.1 774 67.6
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 2.3e-288 995.3 772 67.9
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 3.0e-288 995.0 771 68.2
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 1.2e-287 993.0 774 67.4
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 2.6e-287 991.9 769 68.5
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 5.7e-287 990.7 772 67.6
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 5.7e-287 990.7 771 67.8
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 7.5e-287 990.3 771 68.4
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 7.5e-287 990.3 772 67.6
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 4.8e-286 987.6 769 68.1
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 5.3e-285 984.2 774 67.2
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 1.6e-284 982.6 774 66.7
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 2.0e-284 982.2 774 67.3
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 7.7e-284 980.3 771 66.7
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.0e-283 979.9 776 66.4
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 1.1e-282 976.5 774 66.0
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 7.2e-282 973.8 774 66.8
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 8.8e-280 966.8 774 66.4
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 3.4e-279 964.9 780 65.8
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 5.7e-279 964.1 796 65.5
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 1.8e-277 959.1 766 66.6
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 6.6e-275 950.7 772 65.8
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 1.1e-274 949.9 755 65.7
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 7.2e-274 947.2 776 65.5
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 2.8e-273 945.3 758 64.9
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 1.4e-272 943.0 774 65.6
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 3.0e-272 941.8 774 65.2
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 1.2e-271 939.9 774 65.2
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 3.4e-271 938.3 761 67.0
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 5.0e-267 924.5 768 64.3
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 6.6e-267 924.1 780 62.4
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 6.6e-267 924.1 774 62.8
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.1e-266 923.3 727 67.4
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 4.7e-265 917.9 775 64.1
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 8.0e-265 917.1 767 62.6
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 1.0e-264 916.8 774 62.3
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 4.4e-263 911.4 774 63.6
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 9.8e-263 910.2 765 62.5
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 9.8e-263 910.2 768 62.0
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 2.4e-261 905.6 771 63.0
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 3.2e-261 905.2 760 64.6
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 5.4e-261 904.4 774 62.5
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 2.0e-260 902.5 771 62.8
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 2.7e-260 902.1 767 61.8
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 3.9e-259 898.3 760 62.9
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 5.0e-259 897.9 774 60.9
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 1.6e-257 892.9 760 62.5
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 2.8e-257 892.1 764 61.9
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 8.0e-257 890.6 771 62.8
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 6.4e-254 880.9 790 60.5
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 9.2e-253 877.1 767 60.1
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 9.2e-253 877.1 767 60.1
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 9.2e-253 877.1 767 60.0
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 9.2e-253 877.1 769 60.3
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 1.0e-251 873.6 767 60.4
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 2.3e-251 872.5 770 60.3
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 5.1e-251 871.3 767 59.7
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 5.1e-251 871.3 767 59.7
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 3.3e-250 868.6 767 59.7
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 3.3e-250 868.6 767 59.7
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 9.5e-250 867.1 767 59.8
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 9.5e-250 867.1 767 59.8
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 6.2e-249 864.4 765 59.2
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 8.1e-249 864.0 772 60.4
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 2.6e-247 859.0 693 65.4
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 8.3e-246 854.0 762 61.4
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 3.2e-245 852.0 761 58.9
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 2.7e-244 849.0 633 69.8
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 3.0e-243 845.5 769 59.6
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 5.1e-243 844.7 761 58.1
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 6.2e-241 837.8 760 60.1
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 8.4e-230 800.8 715 59.9
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 1.7e-227 793.1 752 57.6
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 8.7e-227 790.8 766 54.6
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 1.1e-224 783.9 774 55.4
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 1.1e-221 773.9 779 54.0
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 4.3e-218 761.9 760 54.5
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 2.8e-217 759.2 676 60.4
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 1.8e-216 756.5 769 54.6
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 7.6e-215 751.1 650 62.6
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 1.1e-213 747.3 837 51.1
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 7.9e-212 741.1 766 53.1
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 1.8e-211 740.0 768 53.3
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 1.8e-211 740.0 768 53.3
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 6.7e-211 738.0 767 52.8
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 2.3e-203 713.0 737 52.8
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 1.5e-191 673.7 769 48.9
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 5.5e-189 665.2 545 64.2
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 9.7e-186 654.4 716 51.8
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.7e-185 653.7 545 64.0
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 5.0e-182 642.1 726 50.6
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 1.6e-180 637.1 729 49.8
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 6.7e-179 631.7 761 46.4
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.4e-176 624.0 553 60.6
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 5.9e-175 618.6 767 46.4
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 6.5e-174 615.1 524 63.0
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 3.7e-169 599.4 771 44.9
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 1.2e-167 594.3 552 57.4
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 8.9e-155 551.6 748 42.5
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 3.9e-142 509.6 326 80.1
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 1.0e-126 458.4 350 67.1
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 1.2e-122 444.9 602 42.2
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 4.3e-109 399.8 325 61.8
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 5.8e-106 389.4 485 47.8
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 3.1e-99 367.1 739 33.6
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.3e-85 320.5 362 51.4
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 3.0e-78 297.4 768 29.2
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 2.9e-73 280.8 220 67.7
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 1.4e-70 271.9 850 28.2
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 1.0e-54 219.2 472 35.2
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.2e-53 215.7 222 56.3
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 8.3e-44 183.0 203 55.2
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 2.3e-41 174.9 124 71.8
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 3.0e-33 147.9 102 67.6
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 9.5e-32 142.9 91 76.9
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 6.2e-31 140.2 136 56.6
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 6.8e-30 136.7 220 40.9
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 6.4e-28 130.2 144 50.0
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 4.1e-27 127.5 237 40.1
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 2.7e-26 124.8 138 50.0
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.3e-25 121.7 80 73.8
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 1.5e-21 109.0 235 35.3
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 4.1e-19 100.9 75 66.7
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 1.6e-18 99.0 92 59.8
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 5.1e-17 94.0 98 50.0
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 4.3e-16 90.9 117 44.4
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 2.1e-15 88.6 79 62.0
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 4.7e-15 87.4 133 42.1
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 4.7e-15 87.4 114 43.0
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 1.4e-14 85.9 79 60.8
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 6.8e-14 83.6 56 80.4
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 1.5e-13 82.4 80 56.2
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 1.7e-12 79.0 63 66.7
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 1.4e-11 75.9 87 46.0
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 1.9e-11 75.5 101 47.5
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.6e-10 72.4 64 57.8
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 1.7e-09 68.9 87 43.7
FAN21G4007 Fragaria x ananassa HOM05D042832 ORTHO05D022695 3.9e-09 67.8 57 66.7
Medtr5g009630 Medicago truncatula HOM05D004543 ORTHO05D004261 2.5e-08 65.1 55 58.2
FAN18G2207 Fragaria x ananassa HOM05D003545 ORTHO05D004720 7.3e-08 63.5 63 57.1
FvH4_5g31120 Fragaria vesca HOM05D003545 ORTHO05D004720 3.6e-07 61.2 63 55.6


User provided reference genes

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