Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 7.1e-43 176.8 85 100.0
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 2.0e-37 158.7 80 93.8
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 1.2e-34 149.4 79 87.3
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 4.6e-34 147.5 79 88.6
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 1.3e-33 146.0 79 87.3
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 4.3e-32 141.0 81 85.2
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 2.2e-28 128.6 79 81.0
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 1.0e-25 119.8 81 74.1
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.1e-23 112.1 80 66.2
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 2.8e-23 111.7 80 66.2
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.8e-23 111.7 80 66.2
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 4.0e-22 107.8 80 67.5
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 5.3e-22 107.5 78 70.5
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 5.3e-22 107.5 78 70.5
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 5.5e-19 97.4 70 68.6
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 1.2e-18 96.3 64 70.3
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 1.5e-16 89.4 78 53.8
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 1.9e-16 89.0 75 57.3
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 5.7e-16 87.4 74 63.5
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 7.4e-16 87.0 74 56.8
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 9.7e-16 86.7 78 57.7
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 9.7e-16 86.7 79 55.7
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 1.3e-15 86.3 70 58.6
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 2.8e-15 85.1 81 54.3
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 3.7e-15 84.7 71 60.6
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 3.7e-15 84.7 71 60.6
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 3.7e-15 84.7 60 66.7
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 6.3e-15 84.0 70 57.1
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 6.3e-15 84.0 77 49.4
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 6.3e-15 84.0 76 55.3
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 8.2e-15 83.6 75 56.0
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 1.8e-14 82.4 75 56.0
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 9.0e-14 80.1 70 54.3
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 1.5e-13 79.3 75 53.3
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.0e-13 79.0 77 54.5
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 2.6e-13 78.6 64 60.9
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 2.6e-13 78.6 76 56.6
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 4.5e-13 77.8 75 53.3
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 5.9e-13 77.4 71 60.6
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 5.9e-13 77.4 71 60.6
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 2.2e-12 75.5 85 50.6
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 2.9e-12 75.1 72 54.2
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 3.8e-12 74.7 80 50.0
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 5.0e-12 74.3 80 52.5
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 6.5e-12 73.9 58 58.6
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 8.5e-12 73.6 77 53.2
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 1.9e-11 72.4 79 44.3
Cc10_g10240 Coffea canephora HOM05D007628 ORTHO05D007342 2.5e-11 72.0 77 51.9
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 7.2e-11 70.5 77 50.6
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 7.2e-11 70.5 79 49.4
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 7.2e-11 70.5 72 50.0
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 2.1e-10 68.9 54 55.6
unitig_578.g16588 Utricularia gibba HOM05D007628 ORTHO05D007342 6.1e-10 67.4 54 50.0
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 6.1e-10 67.4 75 48.0
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 7.9e-10 67.0 71 50.7
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.0e-09 66.6 78 50.0
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.0e-09 66.6 77 50.6
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 1.4e-09 66.2 88 48.9
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 1.4e-09 66.2 73 52.1
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 2.3e-09 65.5 74 45.9
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 3.0e-09 65.1 80 45.0
unitig_578.g16589 Utricularia gibba HOM05D007628 ORTHO05D007342 3.0e-09 65.1 74 44.6
Sopen07g028650 Solanum pennellii HOM05D008200 ORTHO05D010849 5.1e-09 64.3 76 46.1
TPR.G34171 Trifolium pratense HOM05D007628 ORTHO05D007342 5.1e-09 64.3 65 52.3
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 6.7e-09 63.9 83 49.4
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 6.7e-09 63.9 79 48.1
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 1.1e-08 63.2 64 48.4
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 1.1e-08 63.2 63 49.2
PGSC0003DMG400018328 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.1e-08 63.2 72 48.6
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 1.5e-08 62.8 78 50.0
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 1.5e-08 62.8 68 52.9
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 1.9e-08 62.4 67 43.3
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 1.9e-08 62.4 70 50.0
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 2.5e-08 62.0 85 42.4
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 3.3e-08 61.6 76 42.1
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 3.3e-08 61.6 56 53.6
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 3.3e-08 61.6 76 48.7
Solyc07g054720.2 Solanum lycopersicum HOM05D008200 ORTHO05D007342 4.3e-08 61.2 76 43.4
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 4.3e-08 61.2 67 49.3
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 5.7e-08 60.8 77 50.6
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 5.7e-08 60.8 67 44.8
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 5.7e-08 60.8 74 44.6
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 7.4e-08 60.5 71 42.3
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 7.4e-08 60.5 84 46.4
unitig_8.g5068 Utricularia gibba HOM05D007628 ORTHO05D007342 7.4e-08 60.5 49 53.1
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 1.3e-07 59.7 80 42.5
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 1.3e-07 59.7 85 41.2
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 1.7e-07 59.3 53 50.9
CAN.G201.41 Capsicum annuum HOM05D008200 ORTHO05D007342 2.2e-07 58.9 79 48.1
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 2.8e-07 58.5 74 43.2
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 3.7e-07 58.2 74 44.6
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 3.7e-07 58.2 74 44.6
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 3.7e-07 58.2 74 44.6
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 4.8e-07 57.8 74 44.6
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 4.8e-07 57.8 46 56.5
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 4.8e-07 57.8 79 43.0
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 4.8e-07 57.8 48 50.0
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 1.4e-06 56.2 75 40.0
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 1.8e-06 55.8 69 42.0
Peaxi162Scf00391g00729 Petunia axillaris HOM05D008200 ORTHO05D007342 1.8e-06 55.8 73 42.5
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 4.1e-06 54.7 77 42.9


User provided reference genes

Program Settings