Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2352 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.4e-58 229.2 170 100.0
FAN04G1034 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.9e-43 179.1 148 93.2
FvH4_5g36280 Fragaria vesca HOM05D004728 ORTHO05D002375 6.4e-43 177.9 148 93.9
FAN13G0425 Fragaria x ananassa HOM05D004728 ORTHO05D002375 3.5e-41 172.2 149 90.6
RcHm_v2.0_Chr7g0238181 Rosa chinensis HOM05D004728 ORTHO05D002375 2.5e-39 166.0 147 82.3
RcHm_v2.0_Chr7g0238201 Rosa chinensis HOM05D004728 ORTHO05D002375 3.2e-34 149.1 159 64.2
MD08G1189800 Malus domestica HOM05D004728 ORTHO05D002375 1.1e-21 107.5 105 60.0
MD15G1377600 Malus domestica HOM05D004728 ORTHO05D002375 1.8e-21 106.7 105 60.0
COL.COLO4_11993 Corchorus olitorius HOM05D004728 ORTHO05D002375 1.2e-17 94.0 105 61.9
Duzib093G1766 Durio zibethinus HOM05D004728 ORTHO05D002375 6.6e-16 88.2 102 62.7
Cfa017899 Carpinus fangiana HOM05D004728 ORTHO05D002375 1.5e-15 87.0 107 60.7
Haze_18251 Corylus avellana HOM05D004728 ORTHO05D002375 1.5e-15 87.0 108 60.2
Gohir.A02G076900 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.6e-14 83.6 90 61.1
Prupe.1G524300 Prunus persica HOM05D004728 ORTHO05D002375 1.6e-14 83.6 61 59.0
FAN18G3056 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.1e-14 83.2 106 61.3
Thecc.08G100800 Theobroma cacao HOM05D004728 ORTHO05D002375 2.1e-14 83.2 92 64.1
Dinv07081 Davidia involucrata HOM05D004728 ORTHO05D002375 3.6e-14 82.4 103 63.1
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 3.6e-14 82.4 103 62.1
Gorai.005G094700 Gossypium raimondii HOM05D004728 ORTHO05D002375 4.8e-14 82.0 93 59.1
VMungo0647G1593 Vigna mungo HOM05D012119 ORTHO05D002375 4.8e-14 82.0 98 49.0
Cfa017900 Carpinus fangiana HOM05D004728 ORTHO05D002375 1.1e-13 80.9 101 56.4
CiPaw.16G032300 Carya illinoinensis HOM05D004728 ORTHO05D002375 2.4e-13 79.7 102 55.9
GSVIVG01009093001 Vitis vinifera HOM05D004728 ORTHO05D002375 3.1e-13 79.3 102 57.8
CANSAT25G2000 Cannabis sativa HOM05D004728 ORTHO05D002375 4.0e-13 79.0 105 61.0
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 9.0e-13 77.8 107 56.1
Gorai.009G233200 Gossypium raimondii HOM05D004728 ORTHO05D002375 1.2e-12 77.4 102 55.9
Gohir.D05G225700 Gossypium hirsutum HOM05D004728 ORTHO05D002375 2.6e-12 76.3 102 54.9
Duzib041G0412 Durio zibethinus HOM05D004728 ORTHO05D002375 4.5e-12 75.5 105 56.2
Gohir.D05G225800 Gossypium hirsutum HOM05D004728 ORTHO05D002375 7.6e-12 74.7 104 46.2
CiPaw.16G032400 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.7e-11 73.6 102 55.9
ECA247G2878 Erigeron canadensis HOM05D004728 ORTHO05D002375 1.7e-11 73.6 104 52.9
Eucgr.F00382 Eucalyptus grandis HOM05D004728 ORTHO05D002375 1.7e-11 73.6 96 56.2
Oeu045990.1 Olea europaea HOM05D004728 ORTHO05D002375 1.7e-11 73.6 106 51.9
Gohir.D02G084100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 2.2e-11 73.2 83 59.0
MD15G1317700 Malus domestica HOM05D004728 ORTHO05D002375 2.2e-11 73.2 103 55.3
arahy.Tifrunner.gnm1.ann1.30DIRF Arachis hypogaea HOM05D012119 ORTHO05D002375 3.8e-11 72.4 104 51.0
arahy.Tifrunner.gnm1.ann1.69RQXC Arachis hypogaea HOM05D012119 ORTHO05D002375 3.8e-11 72.4 104 51.0
Gorai.009G233300 Gossypium raimondii HOM05D004728 ORTHO05D002375 3.8e-11 72.4 104 49.0
Duzib093G2113 Durio zibethinus HOM05D004728 ORTHO05D002375 8.4e-11 71.2 104 49.0
CSS0049063 Camellia sinensis var. sinensis HOM05D004728 ORTHO05D002375 1.4e-10 70.5 106 55.7
CiPaw.15G045100 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.4e-10 70.5 106 47.2
Thecc.08G100900 Theobroma cacao HOM05D004728 ORTHO05D002375 3.2e-10 69.3 109 48.6
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 4.2e-10 68.9 104 52.9
Peaxi162Scf01184g00014 Petunia axillaris HOM05D004728 ORTHO05D002375 4.2e-10 68.9 107 49.5
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 4.2e-10 68.9 107 53.3
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 5.4e-10 68.6 105 48.6
MSTRG.1387 Avicennia marina HOM05D004728 ORTHO05D002375 1.6e-09 67.0 105 52.4
QL02p002263 Quercus lobata HOM05D004728 ORTHO05D002375 1.6e-09 67.0 105 52.4
CiPaw.15G045000 Carya illinoinensis HOM05D004728 ORTHO05D002375 2.1e-09 66.6 106 45.3
Gohir.A05G223000 Gossypium hirsutum HOM05D004728 ORTHO05D002375 2.1e-09 66.6 111 50.5
vmacro04704 Vaccinium macrocarpon HOM05D004728 ORTHO05D002375 3.5e-09 65.9 90 60.0
arahy.Tifrunner.gnm1.ann1.RDUL0C Arachis hypogaea HOM05D012119 ORTHO05D002375 6.0e-09 65.1 95 48.4
Actinidia33119 Actinidia chinensis HOM05D004728 ORTHO05D002375 7.9e-09 64.7 106 49.1
Phvul.008G177300 Phaseolus vulgaris HOM05D012119 ORTHO05D002375 7.9e-09 64.7 79 50.6
COL.COLO4_11997 Corchorus olitorius HOM05D004728 ORTHO05D002375 1.0e-08 64.3 104 53.8
Gohir.A05G223100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.0e-08 64.3 104 48.1
Rhsim07G0205400 Rhododendron simsii HOM05D004728 ORTHO05D002375 1.0e-08 64.3 60 46.7
arahy.Tifrunner.gnm1.ann1.9U5DT8 Arachis hypogaea HOM05D012119 ORTHO05D002375 1.3e-08 63.9 95 48.4
Rhsim06G0077100 Rhododendron simsii HOM05D004728 ORTHO05D002375 1.3e-08 63.9 103 47.6
Prupe.6G194100 Prunus persica HOM05D004728 ORTHO05D002375 1.8e-08 63.5 105 50.5
Lalb_Chr17g0344311 Lupinus albus HOM05D012119 ORTHO05D002375 2.3e-08 63.2 60 40.0
MSTRG.1471 Avicennia marina HOM05D004728 ORTHO05D002375 3.0e-08 62.8 96 52.1
DCAR_012879 Daucus carota HOM05D004728 ORTHO05D002375 3.0e-08 62.8 104 52.9
Potri.002G101600 Populus trichocarpa HOM05D004728 ORTHO05D002375 6.7e-08 61.6 115 50.4
EL10Ac1g01137 Beta vulgaris HOM05D004728 ORTHO05D002375 8.7e-08 61.2 107 31.8
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 1.9e-07 60.1 109 45.0
MSTRG.1389 Avicennia marina HOM05D004728 ORTHO05D002375 2.5e-07 59.7 85 54.1
Migut.C01097 Erythranthe guttata HOM05D004728 ORTHO05D002375 2.5e-07 59.7 106 50.0
Glyma.14G177800 Glycine max HOM05D012119 ORTHO05D002375 2.5e-07 59.7 70 37.1
Glyma.02G210100 Glycine max HOM05D012119 ORTHO05D002375 3.3e-07 59.3 108 34.3
PSO700G0018 Papaver somniferum HOM05D015253 ORTHO05D002375 3.3e-07 59.3 73 37.0
Hund14099 Selenicereus undatus HOM05D004728 ORTHO05D002375 3.3e-07 59.3 86 58.1
Duzib116G0314 Durio zibethinus HOM05D004728 ORTHO05D002375 5.6e-07 58.5 71 60.6
FAN19G1066 Fragaria x ananassa HOM05D004728 ORTHO05D002375 5.6e-07 58.5 93 53.8
FAN23G2235 Fragaria x ananassa HOM05D004728 ORTHO05D002375 5.6e-07 58.5 93 53.8
Lj4A728G42 Lonicera japonica HOM05D004728 ORTHO05D002375 5.6e-07 58.5 104 31.7
PSO675G6306 Papaver somniferum HOM05D004728 ORTHO05D002375 5.6e-07 58.5 104 47.1
Aqoxy476s002 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 7.4e-07 58.2 104 27.9
Aqoxy6G00703 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 7.4e-07 58.2 104 27.9
FAN26G1362 Fragaria x ananassa HOM05D004728 ORTHO05D002375 9.6e-07 57.8 93 52.7
Lsat_1_v5_gn_1_2840 Lactuca sativa HOM05D004728 ORTHO05D002375 9.6e-07 57.8 108 43.5
Lalb_Chr10g0102541 Lupinus albus HOM05D012119 ORTHO05D002375 9.6e-07 57.8 94 52.1
Actinidia29600 Actinidia chinensis HOM05D004728 ORTHO05D002375 1.3e-06 57.4 112 50.0
HanXRQChr17g0556321 Helianthus annuus HOM05D004728 ORTHO05D002375 1.6e-06 57.0 103 29.1
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 2.1e-06 56.6 73 35.6
Migut.C01161 Erythranthe guttata HOM05D004728 ORTHO05D002375 2.8e-06 56.2 98 55.1
MSTRG.1388 Avicennia marina HOM05D004728 ORTHO05D002375 3.7e-06 55.8 105 45.7
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 3.7e-06 55.8 103 45.6
MD15G1317500 Malus domestica HOM05D004728 ORTHO05D002375 3.7e-06 55.8 46 52.2
Prupe.6G194200 Prunus persica HOM05D004728 ORTHO05D002375 3.7e-06 55.8 56 50.0
Sc01g0000880 Simmondsia chinensis HOM05D004728 ORTHO05D002375 3.7e-06 55.8 87 49.4
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 4.8e-06 55.5 82 57.3
RcHm_v2.0_Chr2g0112251 Rosa chinensis HOM05D004728 ORTHO05D002375 4.8e-06 55.5 95 50.5
CANSAT01G0157 Cannabis sativa HOM05D004728 ORTHO05D002375 6.2e-06 55.1 113 45.1
Lj2A538G23 Lonicera japonica HOM05D004728 ORTHO05D002375 6.2e-06 55.1 94 33.0
FAN28G1290 Fragaria x ananassa HOM05D004728 ORTHO05D002375 8.1e-06 54.7 93 51.6
Lj4A728T43 Lonicera japonica HOM05D004728 ORTHO05D002375 8.1e-06 54.7 104 28.8
MD15G1317800 Malus domestica HOM05D004728 ORTHO05D002375 8.1e-06 54.7 63 41.3


User provided reference genes

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