Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2312 Fragaria x ananassa HOM05D003386 ORTHO05D205721 2.4e-84 315.5 157 100.0
FAN04G0911 Fragaria x ananassa HOM05D003386 ORTHO05D004061 1.8e-52 209.5 172 69.2
RcHm_v2.0_Chr7g0226301 Rosa chinensis HOM05D003386 ORTHO05D004061 5.2e-23 111.7 111 59.5
MD08G1220800 Malus domestica HOM05D003386 ORTHO05D004061 2.6e-22 109.4 126 51.6
MD15G1411500 Malus domestica HOM05D003386 ORTHO05D004061 2.6e-22 109.4 126 51.6
MSTRG.27790 Avicennia marina HOM05D003386 ORTHO05D004061 3.4e-22 109.0 119 53.8
MBI05_g00407_MAGBIO Magnolia biondii HOM05D003386 ORTHO05D004061 3.4e-22 109.0 119 54.6
ATR0564G495 Amborella trichopoda HOM05D003386 ORTHO05D004061 4.4e-22 108.6 119 52.9
SGA_v2.0_scaffold45G17309 Striga asiatica HOM05D003386 ORTHO05D004061 4.4e-22 108.6 119 52.9
Duzib264G1262 Durio zibethinus HOM05D003386 ORTHO05D004061 5.7e-22 108.2 119 52.9
Peaxi162Scf00001g00026 Petunia axillaris HOM05D003386 ORTHO05D004061 5.7e-22 108.2 119 54.6
GSVIVG01029788001 Vitis vinifera HOM05D003386 ORTHO05D004061 5.7e-22 108.2 119 54.6
CDE05G2354 Ceratophyllum demersum HOM05D003386 ORTHO05D004061 7.5e-22 107.8 119 52.9
SGA_v2.0_scaffold145G36039 Striga asiatica HOM05D003386 ORTHO05D004061 7.5e-22 107.8 119 52.9
VMungo0540G1300 Vigna mungo HOM05D003386 ORTHO05D004061 7.5e-22 107.8 119 53.8
arahy.Tifrunner.gnm1.ann1.KP3Y1K Arachis hypogaea HOM05D003386 ORTHO05D004061 9.8e-22 107.5 126 50.8
Migut.B00624 Erythranthe guttata HOM05D003386 ORTHO05D004061 9.8e-22 107.5 119 52.9
Lsat_1_v5_gn_9_117420 Lactuca sativa HOM05D003386 ORTHO05D004061 9.8e-22 107.5 119 53.8
PGR102G0128 Punica granatum HOM05D003386 ORTHO05D004061 9.8e-22 107.5 119 53.8
TAR625G0989 Trochodendron aralioides HOM05D003386 ORTHO05D004061 9.8e-22 107.5 119 52.9
Atru.chr6.1131 Acer truncatum HOM05D003386 ORTHO05D004061 1.3e-21 107.1 119 52.9
arahy.Tifrunner.gnm1.ann1.JC4ZCG Arachis hypogaea HOM05D003386 ORTHO05D004061 1.3e-21 107.1 126 50.8
Ca_00128_v3 Cicer arietinum L. HOM05D003386 ORTHO05D004061 1.3e-21 107.1 119 52.1
Ca_18341_v3 Cicer arietinum L. HOM05D003386 ORTHO05D004061 1.3e-21 107.1 119 52.9
Duzib187G1230 Durio zibethinus HOM05D003386 ORTHO05D004061 1.3e-21 107.1 119 53.8
Os08g0225000 Oryza sativa ssp. japonica HOM05D003386 ORTHO05D004061 1.3e-21 107.1 119 52.9
PSO133G0027 Papaver somniferum HOM05D003386 ORTHO05D004061 1.3e-21 107.1 119 52.9
MSTRG.5264 Avicennia marina HOM05D003386 ORTHO05D004061 1.7e-21 106.7 119 52.9
CiPaw.05G037800 Carya illinoinensis HOM05D003386 ORTHO05D004061 1.7e-21 106.7 119 53.8
Nn1g05283 Nelumbo nucifera HOM05D003386 ORTHO05D004061 1.7e-21 106.7 119 53.8
Nn5g29041 Nelumbo nucifera HOM05D003386 ORTHO05D004061 1.7e-21 106.7 119 53.8
SalBow6G6318 Salvia bowleyana HOM05D003386 ORTHO05D004061 1.7e-21 106.7 119 52.9
SEGI_14878 Sequoiadendron giganteum HOM05D003386 ORTHO05D004061 1.7e-21 106.7 119 52.9
THA.LOC104824866 Tarenaya hassleriana HOM05D003386 ORTHO05D004061 1.7e-21 106.7 119 54.6
Atru.chr4.164 Acer truncatum HOM05D003386 ORTHO05D004061 2.2e-21 106.3 119 52.9
CANSAT11G0561 Cannabis sativa HOM05D003386 ORTHO05D004061 2.2e-21 106.3 119 52.9
Cfa002693 Carpinus fangiana HOM05D003386 ORTHO05D004061 2.2e-21 106.3 119 52.9
Cfa005625 Carpinus fangiana HOM05D003386 ORTHO05D004061 2.2e-21 106.3 119 52.9
CDE05G1762 Ceratophyllum demersum HOM05D003386 ORTHO05D004061 2.2e-21 106.3 119 52.1
Ciclev10029222m.g Citrus clementina HOM05D003386 ORTHO05D004061 2.2e-21 106.3 119 52.9
Glyma.08G179900 Glycine max HOM05D003386 ORTHO05D004061 2.2e-21 106.3 119 52.9
Glyma.15G052500 Glycine max HOM05D003386 ORTHO05D004061 2.2e-21 106.3 119 52.9
Lj5C241T2 Lonicera japonica HOM05D003386 ORTHO05D004061 2.2e-21 106.3 119 52.9
MBI06_g27496_MAGBIO Magnolia biondii HOM05D003386 ORTHO05D004061 2.2e-21 106.3 119 52.9
Phvul.002G207600 Phaseolus vulgaris HOM05D003386 ORTHO05D004061 2.2e-21 106.3 119 52.9
Prupe.1G557700 Prunus persica HOM05D003386 ORTHO05D004061 2.2e-21 106.3 126 50.8
TAR381G0876 Trochodendron aralioides HOM05D003386 ORTHO05D004061 2.2e-21 106.3 119 52.9
Actinidia28060 Actinidia chinensis HOM05D003386 ORTHO05D004061 2.8e-21 105.9 119 53.8
CSS0046980 Camellia sinensis var. sinensis HOM05D003386 ORTHO05D004061 2.8e-21 105.9 119 53.8
MD00G1064800 Malus domestica HOM05D003386 ORTHO05D004061 2.8e-21 105.9 119 53.8
PGR142G1162 Punica granatum HOM05D003386 ORTHO05D004061 2.8e-21 105.9 119 52.1
Thecc.01G105400 Theobroma cacao HOM05D003386 ORTHO05D004061 2.8e-21 105.9 119 52.1
TWI14G0589 Tripterygium wilfordii HOM05D003386 ORTHO05D004061 2.8e-21 105.9 119 52.1
TWI14G0727 Tripterygium wilfordii HOM05D003386 ORTHO05D004061 2.8e-21 105.9 119 52.1
GSVIVG01006367001 Vitis vinifera HOM05D003386 ORTHO05D004061 2.8e-21 105.9 119 52.1
HanXRQChr03g0066951 Helianthus annuus HOM05D003386 ORTHO05D004061 3.7e-21 105.5 119 52.1
HanXRQChr10g0295971 Helianthus annuus HOM05D003386 ORTHO05D004061 3.7e-21 105.5 119 52.9
Hma1.2p1_0522F.1_g171540 Hydrangea macrophylla HOM05D003386 ORTHO05D004061 3.7e-21 105.5 119 52.9
Hma1.2p1_1341F.1_g276850 Hydrangea macrophylla HOM05D003386 ORTHO05D004061 3.7e-21 105.5 119 52.9
PSO063G7399 Papaver somniferum HOM05D003386 ORTHO05D004061 3.7e-21 105.5 119 52.1
PSO782G5312 Papaver somniferum HOM05D003386 ORTHO05D004061 3.7e-21 105.5 119 52.1
Prupe.6G180800 Prunus persica HOM05D003386 ORTHO05D004061 3.7e-21 105.5 119 52.9
QL11p019866 Quercus lobata HOM05D003386 ORTHO05D004061 3.7e-21 105.5 112 55.4
Eucgr.I02676 Eucalyptus grandis HOM05D003386 ORTHO05D004061 4.8e-21 105.1 112 54.5
Gohir.A02G132000 Gossypium hirsutum HOM05D003386 ORTHO05D004061 4.8e-21 105.1 119 52.1
Gohir.D03G043300 Gossypium hirsutum HOM05D003386 ORTHO05D004061 4.8e-21 105.1 119 52.1
Nitab4.5_0002865g0030 Nicotiana tabacum HOM05D003386 ORTHO05D004061 4.8e-21 105.1 119 52.1
Phvul.006G207200 Phaseolus vulgaris HOM05D003386 ORTHO05D004061 4.8e-21 105.1 119 52.1
Potri.003G020300 Populus trichocarpa HOM05D003386 ORTHO05D004061 4.8e-21 105.1 119 52.1
Sabra01G0162100 Salix brachista HOM05D003386 ORTHO05D004061 4.8e-21 105.1 112 54.5
THA.LOC104801700 Tarenaya hassleriana HOM05D003386 ORTHO05D004061 4.8e-21 105.1 119 54.6
THA.LOC104818493 Tarenaya hassleriana HOM05D003386 ORTHO05D004061 4.8e-21 105.1 119 54.6
TPR.G10437 Trifolium pratense HOM05D003386 ORTHO05D004061 4.8e-21 105.1 119 52.1
Zm00001eb170970 Zea mays HOM05D003386 ORTHO05D004061 4.8e-21 105.1 119 52.1
EL10Ac9g21474 Beta vulgaris HOM05D003386 ORTHO05D004061 6.3e-21 104.8 119 52.9
CARHR113420 Cardamine hirsuta HOM05D003386 ORTHO05D004061 6.3e-21 104.8 119 52.9
ClCG07G009490 Citrullus lanatus HOM05D003386 ORTHO05D004061 6.3e-21 104.8 119 52.9
Dinv09045 Davidia involucrata HOM05D003386 ORTHO05D004061 6.3e-21 104.8 119 52.9
Dinv24205 Davidia involucrata HOM05D003386 ORTHO05D004061 6.3e-21 104.8 112 56.2
Thhalv10000316m.g Eutrema salsugineum HOM05D003386 ORTHO05D004061 6.3e-21 104.8 119 52.9
Gorai.003G044400 Gossypium raimondii HOM05D003386 ORTHO05D004061 6.3e-21 104.8 121 49.6
Os05g0435700 Oryza sativa ssp. japonica HOM05D003386 ORTHO05D004061 6.3e-21 104.8 119 52.1
RcHm_v2.0_Chr2g0115241 Rosa chinensis HOM05D003386 ORTHO05D004061 6.3e-21 104.8 119 52.9
Ah.01g009650 Amaranthus hybridus HOM05D003386 ORTHO05D004061 8.3e-21 104.4 119 52.1
AL6G20650 Arabidopsis lyrata HOM05D003386 ORTHO05D004061 8.3e-21 104.4 119 52.9
AT5G10160 Arabidopsis thaliana HOM05D003386 ORTHO05D004061 8.3e-21 104.4 119 52.9
FvH4_1g21430 Fragaria vesca HOM05D003386 ORTHO05D004061 8.3e-21 104.4 119 52.9
FAN19G2648 Fragaria x ananassa HOM05D003386 ORTHO05D004061 8.3e-21 104.4 119 52.9
FAN23G1173 Fragaria x ananassa HOM05D003386 ORTHO05D004061 8.3e-21 104.4 119 52.9
FAN26G2200 Fragaria x ananassa HOM05D003386 ORTHO05D004061 8.3e-21 104.4 119 52.9
Glyma.08G073900 Glycine max HOM05D003386 ORTHO05D004061 8.3e-21 104.4 112 54.5
Rhsim11G0136000 Rhododendron simsii HOM05D003386 ORTHO05D004061 8.3e-21 104.4 119 53.8
Sc14g0002680 Simmondsia chinensis HOM05D003386 ORTHO05D004061 8.3e-21 104.4 119 52.9
BcaB08g35050 Brassica carinata HOM05D003386 ORTHO05D004061 1.1e-20 104.0 119 52.1
Lj4g0024201 Lotus japonicus HOM05D003386 ORTHO05D004061 1.1e-20 104.0 119 52.1
Psat7g097760 Pisum sativum HOM05D003386 ORTHO05D004061 1.1e-20 104.0 119 51.3
Sed0010363 Sechium edule HOM05D003386 ORTHO05D004061 1.1e-20 104.0 119 52.1
Hund06384 Selenicereus undatus HOM05D003386 ORTHO05D004061 1.1e-20 104.0 119 53.8
Solyc01g105060.3 Solanum lycopersicum HOM05D003386 ORTHO05D004061 1.1e-20 104.0 119 51.3
Sopen01g047590 Solanum pennellii HOM05D003386 ORTHO05D004061 1.1e-20 104.0 119 51.3
PGSC0003DMG400012564 Solanum tuberosum HOM05D003386 ORTHO05D004061 1.1e-20 104.0 119 51.3
THA.LOC104799058 Tarenaya hassleriana HOM05D003386 ORTHO05D004061 1.1e-20 104.0 119 53.8
TPR.G13597 Trifolium pratense HOM05D003386 ORTHO05D004061 1.1e-20 104.0 119 51.3
CANSAT01G2072 Cannabis sativa HOM05D003386 ORTHO05D004061 1.4e-20 103.6 112 53.6
Lalb_Chr20g0123071 Lupinus albus HOM05D003386 ORTHO05D004061 1.4e-20 103.6 117 53.0
Medtr4g094265 Medicago truncatula HOM05D003386 ORTHO05D004061 1.4e-20 103.6 119 51.3
Nitab4.5_0003434g0020 Nicotiana tabacum HOM05D003386 ORTHO05D004061 1.4e-20 103.6 119 51.3
Aqoxy6G00575 Aquilegia oxysepala HOM05D003386 ORTHO05D004061 1.8e-20 103.2 109 54.1
AL4G11710 Arabidopsis lyrata HOM05D003386 ORTHO05D004061 1.8e-20 103.2 119 52.1
AT2G22230 Arabidopsis thaliana HOM05D003386 ORTHO05D004061 1.8e-20 103.2 119 52.1
Carub.0004s0137 Capsella rubella HOM05D003386 ORTHO05D004061 1.8e-20 103.2 119 52.1
Carub.0006s0862 Capsella rubella HOM05D003386 ORTHO05D004061 1.8e-20 103.2 119 52.1
ECA234G2237 Erigeron canadensis HOM05D003386 ORTHO05D004061 1.8e-20 103.2 113 54.9
Nitab4.5_0000078g0070 Nicotiana tabacum HOM05D003386 ORTHO05D004061 1.8e-20 103.2 119 52.1
SMO340G0249 Selaginella moellendorffii HOM05D003386 ORTHO05D004061 1.8e-20 103.2 117 53.0
arahy.Tifrunner.gnm1.ann1.M024AA Arachis hypogaea HOM05D003386 ORTHO05D004061 2.4e-20 102.8 119 51.3
arahy.Tifrunner.gnm1.ann1.Q99U9Q Arachis hypogaea HOM05D003386 ORTHO05D004061 2.4e-20 102.8 119 51.3
Cc02_g21710 Coffea canephora HOM05D003386 ORTHO05D004061 2.4e-20 102.8 119 52.1
Thhalv10014496m.g Eutrema salsugineum HOM05D003386 ORTHO05D004061 2.4e-20 102.8 119 52.1
Manes.01G139400 Manihot esculenta HOM05D003386 ORTHO05D004061 2.4e-20 102.8 119 52.1
Aa31LG3G16980 Aethionema arabicum HOM05D003386 ORTHO05D004061 3.1e-20 102.4 119 52.9
MELO3C017583.2 Cucumis melo HOM05D003386 ORTHO05D004061 3.1e-20 102.4 119 51.3
CsaV3_4G004790 Cucumis sativus L. HOM05D003386 ORTHO05D004061 3.1e-20 102.4 119 51.3
Nitab4.5_0001254g0040 Nicotiana tabacum HOM05D003386 ORTHO05D004061 3.1e-20 102.4 119 52.1
A02p00360 Brassica napus HOM05D003386 ORTHO05D004061 4.1e-20 102.1 119 52.1
BraA02t05021Z Brassica rapa HOM05D003386 ORTHO05D004061 4.1e-20 102.1 119 52.1
Cpa.g.sc20.223 Carica papaya HOM05D003386 ORTHO05D004061 4.1e-20 102.1 119 51.3
AUR62013121 Chenopodium quinoa HOM05D003386 ORTHO05D004061 4.1e-20 102.1 147 44.9
Peaxi162Scf00003g03625 Petunia axillaris HOM05D003386 ORTHO05D004061 4.1e-20 102.1 119 51.3
Sp6g33240 Schrenkiella parvula HOM05D003386 ORTHO05D004061 4.1e-20 102.1 119 51.3
Aqoxy3G02117 Aquilegia oxysepala HOM05D003386 ORTHO05D004061 5.4e-20 101.7 115 53.0
BraA09t41163Z Brassica rapa HOM05D003386 ORTHO05D004061 5.4e-20 101.7 126 49.2
CARHR203130 Cardamine hirsuta HOM05D003386 ORTHO05D004061 5.4e-20 101.7 119 51.3
Mapoly0022s0038 Marchantia polymorpha HOM05D003386 ORTHO05D004061 5.4e-20 101.7 119 50.4
Sp4g01270 Schrenkiella parvula HOM05D003386 ORTHO05D004061 5.4e-20 101.7 117 52.1
BcaB01g05546 Brassica carinata HOM05D003386 ORTHO05D004061 7.0e-20 101.3 119 51.3
Medtr2g008620 Medicago truncatula HOM05D003386 ORTHO05D004061 7.0e-20 101.3 119 50.4
vmacro01818 Vaccinium macrocarpon HOM05D003386 ORTHO05D004061 7.0e-20 101.3 119 52.1
A09p57700 Brassica napus HOM05D003386 ORTHO05D004061 9.1e-20 100.9 121 50.4
BolC2t06394H Brassica oleracea HOM05D003386 ORTHO05D004061 9.1e-20 100.9 119 52.1
BcaC02g08725 Brassica carinata HOM05D003386 ORTHO05D004061 1.2e-19 100.5 118 51.7
A04p16740 Brassica napus HOM05D003386 ORTHO05D004061 1.2e-19 100.5 118 51.7
BolC4t26719H Brassica oleracea HOM05D003386 ORTHO05D004061 1.2e-19 100.5 118 51.7
BraA04t17306Z Brassica rapa HOM05D003386 ORTHO05D004061 1.2e-19 100.5 118 51.7
Pp3c24_9920 Physcomitrium patens HOM05D003386 ORTHO05D004061 1.2e-19 100.5 119 49.6
Zm00001eb348600 Zea mays HOM05D003386 ORTHO05D004061 1.2e-19 100.5 119 51.3
C02p04300 Brassica napus HOM05D003386 ORTHO05D004061 1.6e-19 100.1 119 52.1
CAN.G523.83 Capsicum annuum HOM05D003386 ORTHO05D004061 2.0e-19 99.8 119 50.4
AagrBONN_evm.TU.Sc2ySwM_362.2717 Anthoceros agrestis HOM05D003386 ORTHO05D004061 2.7e-19 99.4 123 49.6
A03p04440 Brassica napus HOM05D003386 ORTHO05D004061 2.7e-19 99.4 119 50.4
C03p04930 Brassica napus HOM05D003386 ORTHO05D004061 2.7e-19 99.4 119 50.4
BolC3t13024H Brassica oleracea HOM05D003386 ORTHO05D004061 2.7e-19 99.4 119 50.4
BraA03t09789Z Brassica rapa HOM05D003386 ORTHO05D004061 2.7e-19 99.4 119 50.4
CiPaw.03G139400 Carya illinoinensis HOM05D003386 ORTHO05D004061 3.5e-19 99.0 108 52.8
C04p51290 Brassica napus HOM05D003386 ORTHO05D004061 4.5e-19 98.6 118 50.0
Pp3c23_11330 Physcomitrium patens HOM05D003386 ORTHO05D004061 4.5e-19 98.6 119 47.9
Gohir.A10G085700 Gossypium hirsutum HOM05D003386 ORTHO05D004061 1.7e-18 96.7 148 41.9
CBR_g26519 Chara braunii HOM05D003386 ORTHO05D004061 5.0e-18 95.1 112 50.0
Pp3c14_8480 Physcomitrium patens HOM05D003386 ORTHO05D004061 1.5e-17 93.6 119 45.4
AUR62010125 Chenopodium quinoa HOM05D003386 ORTHO05D004061 2.5e-17 92.8 163 39.9
Gorai.011G112700 Gossypium raimondii HOM05D003386 ORTHO05D004061 5.5e-17 91.7 148 39.9
unitig_8.g3472 Utricularia gibba HOM05D003569 ORTHO05D004178 7.2e-17 91.3 151 40.4
Gohir.D10G102800 Gossypium hirsutum HOM05D003386 ORTHO05D004061 1.2e-16 90.5 148 39.2
CSS0042502 Camellia sinensis var. sinensis HOM05D003386 ORTHO05D004061 2.1e-16 89.7 110 48.2
CARHR113430 Cardamine hirsuta HOM05D003386 ORTHO05D004061 1.0e-15 87.4 144 41.7
PRCOL_00002661 Prasinoderma coloniale HOM05D003386 ORTHO05D004061 5.2e-15 85.1 103 48.5
CSS0037466 Camellia sinensis var. sinensis HOM05D003386 ORTHO05D004061 8.9e-15 84.3 109 46.8
TWI23G0665 Tripterygium wilfordii HOM05D003386 ORTHO05D004061 5.7e-14 81.6 107 47.7
C08p40900 Brassica napus HOM05D003386 ORTHO05D004061 7.5e-14 81.3 87 51.7
Sabra03G0011700 Salix brachista HOM05D003386 ORTHO05D004061 4.9e-13 78.6 191 33.0
MCO11G889 Micromonas commoda HOM05D003386 ORTHO05D004061 2.4e-12 76.3 110 42.7
Cre03.g208050 Chlamydomonas reinhardtii HOM05D003386 ORTHO05D004061 3.5e-11 72.4 101 45.5
QL06p050185 Quercus lobata HOM05D003386 ORTHO05D004061 5.9e-11 71.6 98 46.9
DCAR_021850 Daucus carota HOM05D003386 ORTHO05D004061 1.3e-10 70.5 82 51.2
Oeu007954.1 Olea europaea HOM05D003386 ORTHO05D004061 2.9e-10 69.3 78 52.6
Glyma.05G118900 Glycine max HOM05D003386 ORTHO05D004061 1.9e-09 66.6 70 52.9
Ciclev10026811m.g Citrus clementina HOM05D003386 ORTHO05D004061 3.3e-09 65.9 131 36.6
Potri.001G209900 Populus trichocarpa HOM05D003386 ORTHO05D004061 4.3e-09 65.5 78 51.3
COL.COLO4_09922 Corchorus olitorius HOM05D003386 ORTHO05D004061 9.5e-09 64.3 69 50.7
HPP92_011382 Vanilla planifolia HOM05D003386 ORTHO05D004061 1.6e-08 63.5 87 43.7
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 2.8e-08 62.8 71 47.9
Ciclev10030121m.g Citrus clementina HOM05D003386 ORTHO05D004061 1.0e-07 60.8 77 48.1
Haze_27155 Corylus avellana HOM05D003386 ORTHO05D007535 1.0e-07 60.8 133 37.6
Haze_24968 Corylus avellana HOM05D003386 ORTHO05D004061 1.8e-07 60.1 68 51.5


User provided reference genes

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