Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 2.1e-219 765.4 391 100.0
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 1.3e-208 729.6 392 96.7
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 3.2e-207 724.9 392 96.2
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 6.3e-203 710.7 393 94.4
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 5.0e-160 568.2 403 80.1
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 2.3e-136 489.6 472 62.7
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 3.3e-127 459.1 477 57.4
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 6.6e-120 434.9 473 57.9
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 6.9e-117 424.9 476 54.6
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 8.4e-115 417.9 348 64.1
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 7.1e-114 414.8 345 64.3
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 1.0e-112 411.0 350 64.0
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 1.5e-111 407.1 459 52.7
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 7.4e-111 404.8 424 55.7
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.3e-110 404.1 428 54.9
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 1.3e-110 404.1 299 68.6
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 4.8e-110 402.1 428 54.4
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 9.0e-109 397.9 303 67.0
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 2.0e-108 396.7 441 54.0
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 2.6e-108 396.4 476 52.1
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 4.5e-108 395.6 458 52.2
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 4.5e-108 395.6 357 60.5
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 2.9e-107 392.9 430 54.4
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 6.5e-107 391.7 317 65.3
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 3.2e-106 389.4 382 57.1
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 5.5e-106 388.7 418 54.1
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.6e-105 387.1 356 58.4
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 2.1e-105 386.7 355 59.2
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 4.6e-105 385.6 477 50.9
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 4.6e-105 385.6 445 53.3
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 7.9e-105 384.8 449 51.7
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 2.3e-104 383.3 356 59.0
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 3.0e-104 382.9 358 59.2
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 3.9e-104 382.5 433 52.2
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 8.7e-104 381.3 354 58.5
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 1.5e-103 380.6 393 55.0
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 1.9e-103 380.2 421 53.7
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 2.5e-103 379.8 350 58.0
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 2.5e-103 379.8 341 61.0
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 5.7e-103 378.6 426 52.1
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 7.4e-103 378.3 409 52.6
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 1.3e-102 377.5 461 51.6
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 2.1e-102 376.7 382 55.8
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 2.8e-102 376.3 292 65.1
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 4.8e-102 375.6 336 61.0
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 6.3e-102 375.2 426 52.6
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 8.2e-102 374.8 351 59.0
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.1e-101 374.4 292 65.8
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 1.8e-101 373.6 369 55.6
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 5.3e-101 372.1 427 51.5
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 6.9e-101 371.7 299 64.2
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 9.0e-101 371.3 299 64.2
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 1.2e-100 370.9 413 53.3
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 2.0e-100 370.2 356 55.9
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 1.3e-99 367.5 456 49.6
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 1.7e-99 367.1 447 51.9
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 2.2e-99 366.7 475 48.6
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 2.2e-99 366.7 443 50.3
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 8.4e-99 364.8 354 57.1
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 1.9e-98 363.6 451 49.2
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 4.2e-98 362.5 459 48.1
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 1.3e-96 357.5 377 54.4
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 3.0e-96 356.3 297 61.6
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 3.9e-96 355.9 391 52.9
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 5.1e-96 355.5 361 54.6
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 4.3e-95 352.4 416 51.2
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 4.3e-95 352.4 392 54.8
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 4.3e-95 352.4 456 48.0
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 2.8e-94 349.7 431 49.4
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 8.2e-94 348.2 320 57.5
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 5.9e-92 342.0 388 51.8
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 7.7e-92 341.7 354 54.0
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 1.4e-90 337.4 411 50.4
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.4e-90 337.4 433 48.5
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 1.4e-90 337.4 345 54.2
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 3.6e-89 332.8 291 62.2
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 3.6e-89 332.8 388 50.0
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 8.8e-88 328.2 327 53.5
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 8.8e-88 328.2 299 56.2
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 2.5e-87 326.6 296 56.8
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 1.7e-86 323.9 422 46.7
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 2.8e-86 323.2 439 47.4
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 3.7e-86 322.8 443 46.3
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 1.4e-85 320.9 390 51.0
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 4.1e-85 319.3 456 45.4
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 2.0e-84 317.0 383 50.1
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 3.4e-84 316.2 462 45.0
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 1.0e-80 304.7 461 43.6
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 1.4e-80 304.3 261 59.8
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 3.9e-80 302.8 280 58.6
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 2.6e-79 300.1 393 47.8
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 4.4e-79 299.3 376 46.3
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 1.3e-75 287.7 293 51.5
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 2.9e-75 286.6 429 44.5
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 2.1e-65 253.8 295 46.4
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 1.0e-64 251.5 225 66.2
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 1.8e-61 240.7 332 48.2
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 5.4e-61 239.2 340 40.0
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 9.1e-61 238.4 227 55.9
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 3.5e-60 236.5 394 37.8
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 3.5e-60 236.5 297 43.1
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 2.9e-59 233.4 349 45.3
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 3.8e-59 233.0 168 76.2
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 9.8e-55 218.4 290 41.4
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 2.2e-54 217.2 284 45.4
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 2.4e-53 213.8 201 53.2
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 3.4e-47 193.4 169 59.2
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 1.7e-43 181.0 135 74.8
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.5e-42 177.9 290 41.4
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 1.0e-40 171.8 187 47.6
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 4.0e-40 169.9 102 78.4
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 8.3e-38 162.2 236 38.1
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 1.4e-37 161.4 122 67.2
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 6.8e-32 142.5 123 57.7
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 3.7e-30 136.7 90 80.0
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 2.7e-28 130.6 252 34.9
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 2.7e-28 130.6 323 35.0
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 7.8e-28 129.0 123 53.7
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 4.0e-24 116.7 125 50.4
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 4.0e-24 116.7 125 50.4
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 9.9e-23 112.1 122 50.0
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 2.9e-22 110.5 62 79.0
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 2.1e-17 94.4 46 97.8
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 3.6e-17 93.6 64 64.1
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 3.1e-16 90.5 52 76.9
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 1.1e-13 82.0 54 77.8
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 1.1e-10 72.0 96 35.4
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 1.1e-08 65.5 71 54.9
CBR_g38389 Chara braunii HOM05D005646 ORTHO05D006828 9.0e-08 62.4 153 29.4
GSVIVG01038299001 Vitis vinifera HOM05D005646 ORTHO05D006828 1.5e-07 61.6 43 69.8
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 6.4e-06 56.2 132 34.1
COL.COLO4_08512 Corchorus olitorius HOM05D065443 ORTHO05D006828 6.4e-06 56.2 44 56.8


User provided reference genes

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