Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.4e-209 732.6 356 100.0
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.7e-200 701.8 357 95.5
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 3.5e-200 701.4 357 95.5
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.9e-200 700.7 358 95.5
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 1.4e-177 626.3 355 85.4
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 7.4e-134 481.1 364 68.1
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 3.8e-106 389.0 338 61.8
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 4.2e-105 385.6 336 60.7
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.9e-103 379.0 332 60.2
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 8.8e-103 377.9 330 60.6
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 1.1e-102 377.5 322 60.2
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.4e-102 375.6 330 60.9
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.8e-101 372.1 330 60.9
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 4.8e-101 372.1 320 61.6
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 1.1e-100 370.9 337 59.3
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 9.1e-100 367.9 335 58.5
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.2e-99 367.5 314 61.8
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.3e-98 364.0 336 58.6
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 2.9e-98 362.8 337 58.2
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 3.8e-98 362.5 340 55.3
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 8.5e-98 361.3 314 58.6
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 1.5e-97 360.5 324 59.9
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 3.2e-97 359.4 314 61.1
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 7.2e-97 358.2 365 53.7
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 9.4e-97 357.8 364 53.6
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 1.2e-96 357.5 344 55.5
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 1.2e-96 357.5 342 55.6
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 3.6e-96 355.9 333 56.5
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 4.7e-96 355.5 341 58.7
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 6.1e-96 355.1 317 59.0
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 8.0e-96 354.8 314 59.6
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 1.0e-95 354.4 312 59.6
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 1.4e-95 354.0 314 59.2
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 1.4e-95 354.0 313 58.5
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 1.4e-95 354.0 315 58.7
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 1.4e-95 354.0 337 56.7
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 1.4e-95 354.0 312 60.3
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 1.8e-95 353.6 334 58.4
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 5.2e-95 352.1 315 58.4
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 6.7e-95 351.7 326 58.9
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 8.8e-95 351.3 339 55.5
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 8.8e-95 351.3 339 55.5
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 2.0e-94 350.1 341 54.8
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 2.0e-94 350.1 311 57.2
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 2.6e-94 349.7 332 54.8
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 3.3e-94 349.4 314 58.6
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 5.7e-94 348.6 319 57.7
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 5.7e-94 348.6 315 59.0
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 7.5e-94 348.2 340 53.5
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 1.7e-93 347.1 323 56.3
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 2.2e-93 346.7 337 55.5
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 3.7e-93 345.9 335 54.0
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 4.8e-93 345.5 342 53.8
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 8.2e-93 344.7 319 58.9
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 1.1e-92 344.4 375 51.7
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.1e-92 344.4 314 58.3
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 1.1e-92 344.4 314 58.6
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 1.8e-92 343.6 334 54.8
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 1.8e-92 343.6 314 56.4
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 1.8e-92 343.6 340 53.8
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 2.4e-92 343.2 334 54.8
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 4.1e-92 342.4 336 57.1
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 4.1e-92 342.4 319 58.6
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 5.3e-92 342.0 314 56.7
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 5.3e-92 342.0 332 56.6
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 9.1e-92 341.3 312 56.7
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 1.6e-91 340.5 314 56.4
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 2.0e-91 340.1 314 55.7
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 2.0e-91 340.1 314 55.7
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.7e-91 339.7 312 56.7
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.7e-91 339.7 312 56.7
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 4.5e-91 339.0 393 49.9
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 5.9e-91 338.6 385 50.4
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 5.9e-91 338.6 311 58.2
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 1.3e-90 337.4 337 56.7
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 1.7e-90 337.0 336 52.1
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 1.7e-90 337.0 336 52.4
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 3.8e-90 335.9 315 56.2
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 6.5e-90 335.1 311 56.9
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 1.5e-89 334.0 293 60.1
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.9e-89 333.6 316 55.7
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 3.2e-89 332.8 309 56.0
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 5.5e-89 332.0 363 51.0
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 3.6e-88 329.3 295 59.7
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 6.1e-88 328.6 314 53.8
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 1.0e-87 327.8 338 52.1
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.0e-87 327.8 313 55.3
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 2.3e-87 326.6 318 54.7
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 3.0e-87 326.2 319 56.4
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.0e-86 323.6 317 54.9
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 2.6e-86 323.2 323 56.0
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 1.3e-85 320.9 326 53.1
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 2.2e-85 320.1 334 51.5
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 8.3e-85 318.2 318 53.1
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 7.0e-84 315.1 269 60.6
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 3.5e-83 312.8 306 55.6
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 4.5e-83 312.4 265 60.0
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 4.5e-83 312.4 323 53.3
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 3.8e-82 309.3 323 52.9
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 5.5e-81 305.4 300 54.3
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.2e-80 304.3 272 60.7
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 4.7e-80 302.4 266 60.2
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 6.1e-80 302.0 284 59.5
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 1.0e-79 301.2 391 46.8
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 5.2e-79 298.9 321 53.3
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 2.8e-77 293.1 285 55.1
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 5.4e-76 288.9 260 59.6
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 7.0e-76 288.5 215 67.4
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 3.5e-75 286.2 310 52.6
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.5e-75 286.2 309 49.5
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.1e-73 281.2 252 59.5
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 2.5e-73 280.0 390 42.6
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 2.8e-72 276.6 337 47.2
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.0e-71 274.6 322 48.8
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 2.4e-68 263.5 296 51.0
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 7.8e-67 258.5 311 47.6
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 8.6e-66 255.0 238 57.6
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 2.5e-65 253.4 305 45.6
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 4.3e-65 252.7 398 41.5
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 7.3e-65 251.9 247 55.1
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 6.2e-64 248.8 316 43.4
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 6.2e-64 248.8 304 43.4
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 4.0e-63 246.1 321 42.1
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 5.4e-60 235.7 262 48.9
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 9.2e-60 235.0 271 49.1
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 9.2e-60 235.0 313 43.1
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 2.3e-58 230.3 253 50.2
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.1e-55 221.5 246 50.8
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 2.4e-52 210.3 283 46.3
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 4.3e-49 199.5 272 43.8
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 2.1e-48 197.2 153 64.1
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 6.2e-48 195.7 309 39.8
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.2e-43 181.4 305 37.7
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 5.6e-41 172.6 206 43.7
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.2e-40 171.4 165 52.7
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 3.8e-37 159.8 242 41.3
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.2e-35 154.8 137 56.9
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 1.3e-34 151.4 246 41.1
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 3.0e-34 150.2 318 33.3
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 5.1e-34 149.4 369 31.4
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 2.8e-32 143.7 156 49.4
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 4.8e-32 142.9 249 34.5
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 1.5e-30 137.9 121 64.5
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 7.6e-30 135.6 299 32.8
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 1.3e-29 134.8 92 67.4
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.2e-27 128.3 244 34.8
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 7.9e-27 125.6 363 29.2
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 2.5e-25 120.6 303 30.0
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 9.6e-25 118.6 296 30.4
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 5.8e-22 109.4 68 72.1
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 5.8e-22 109.4 68 72.1
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 1.3e-21 108.2 68 70.6
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 3.8e-21 106.7 264 33.7
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 1.1e-20 105.1 115 39.1
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 3.2e-20 103.6 116 37.1
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 3.2e-20 103.6 85 56.5
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.2e-19 101.7 161 40.4
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 2.1e-19 100.9 291 27.5
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 9.6e-17 92.0 215 33.0
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 9.0e-15 85.5 60 61.7
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 6.0e-11 72.8 82 51.2


User provided reference genes

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