Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.9e-81 303.9 174 100.0
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 2.5e-79 298.9 174 96.0
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.5e-79 298.9 174 96.0
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.5e-79 298.9 174 96.0
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.3e-78 296.6 174 96.0
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 4.3e-71 271.6 167 92.8
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 1.5e-63 246.5 174 84.5
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 7.4e-63 244.2 175 84.0
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 2.2e-59 232.6 173 79.2
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 7.2e-58 227.6 177 65.0
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 9.4e-58 227.3 174 79.3
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 6.1e-57 224.6 174 78.7
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 2.6e-55 219.2 174 77.0
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 3.1e-53 212.2 167 66.5
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 6.9e-53 211.1 165 77.6
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.2e-52 210.3 175 64.0
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 2.6e-52 209.1 175 63.4
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 7.7e-52 207.6 164 65.2
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 5.0e-51 204.9 170 77.1
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.1e-50 203.8 169 63.3
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 1.9e-50 203.0 167 61.7
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 1.9e-50 203.0 231 49.8
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 7.2e-50 201.1 173 64.7
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 4.7e-49 198.4 167 64.1
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.0e-48 197.2 173 71.1
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 3.0e-48 195.7 160 76.2
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 5.2e-48 194.9 167 71.9
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 8.8e-48 194.1 167 71.9
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 8.8e-48 194.1 167 71.9
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 8.8e-48 194.1 173 70.5
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.1e-47 193.7 168 74.4
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 2.6e-47 192.6 174 72.4
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 3.3e-47 192.2 174 57.5
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 1.3e-46 190.3 176 56.2
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 1.7e-46 189.9 168 73.2
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 1.4e-45 186.8 175 54.3
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 7.0e-45 184.5 174 65.5
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 2.0e-44 183.0 166 57.8
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 2.6e-44 182.6 171 67.8
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 5.9e-44 181.4 174 67.2
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 5.9e-44 181.4 168 58.3
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 1.3e-43 180.3 166 70.5
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 2.2e-43 179.5 170 66.5
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 2.2e-43 179.5 176 68.8
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 2.2e-43 179.5 176 68.8
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 2.9e-43 179.1 174 66.7
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 2.9e-43 179.1 173 67.6
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 2.9e-43 179.1 171 57.9
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 3.8e-43 178.7 176 68.8
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 6.5e-43 177.9 132 84.8
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 8.5e-43 177.6 171 66.7
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.1e-42 177.2 174 52.9
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 1.1e-42 177.2 174 65.5
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 1.5e-42 176.8 174 64.4
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.5e-42 176.8 175 53.7
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 2.5e-42 176.0 176 66.5
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 3.2e-42 175.6 165 64.8
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 4.2e-42 175.3 166 54.8
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 4.2e-42 175.3 171 66.7
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 5.5e-42 174.9 174 52.9
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 5.5e-42 174.9 175 64.0
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 5.5e-42 174.9 173 57.8
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 1.6e-41 173.3 165 58.2
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 1.6e-41 173.3 164 67.1
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 1.6e-41 173.3 164 67.1
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 1.6e-41 173.3 159 69.8
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 1.6e-41 173.3 163 69.3
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 2.1e-41 172.9 168 53.6
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 6.1e-41 171.4 173 65.9
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 1.4e-40 170.2 166 66.9
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 2.3e-40 169.5 173 50.9
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 3.0e-40 169.1 164 66.5
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 5.2e-40 168.3 166 66.3
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 6.7e-40 167.9 172 62.8
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 6.7e-40 167.9 165 69.7
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 8.8e-40 167.5 171 52.0
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 1.2e-39 167.2 129 83.7
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 1.2e-39 167.2 173 52.6
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 2.0e-39 166.4 174 66.1
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 2.6e-39 166.0 174 64.9
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 3.3e-39 165.6 169 50.9
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 5.7e-39 164.9 169 56.8
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 7.5e-39 164.5 167 51.5
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 9.7e-39 164.1 173 51.4
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 9.7e-39 164.1 172 61.6
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 9.7e-39 164.1 167 67.7
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.3e-38 163.7 173 63.0
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 1.7e-38 163.3 174 54.6
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 3.7e-38 162.2 163 63.8
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 3.7e-38 162.2 165 64.2
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 6.3e-38 161.4 172 61.0
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 8.2e-38 161.0 174 58.0
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 8.2e-38 161.0 165 52.7
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 1.1e-37 160.6 174 62.1
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.8e-37 159.8 175 50.9
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 3.1e-37 159.1 173 50.3
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 7.0e-37 157.9 175 62.3
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 3.5e-36 155.6 158 65.2
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 3.5e-36 155.6 158 65.2
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 3.8e-35 152.1 135 74.8
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 5.0e-35 151.8 182 46.7
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 8.5e-35 151.0 173 49.1
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 1.1e-34 150.6 121 80.2
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.5e-34 150.2 166 48.8
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 1.9e-34 149.8 165 48.5
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 2.5e-34 149.4 111 84.7
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 3.2e-34 149.1 168 48.8
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 9.4e-34 147.5 146 55.5
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 1.2e-33 147.1 176 61.4
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 1.2e-33 147.1 175 57.1
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 2.1e-33 146.4 177 52.5
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.7e-33 146.0 177 60.5
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 3.6e-33 145.6 162 49.4
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 8.0e-33 144.4 173 48.0
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 8.0e-33 144.4 173 48.0
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.4e-32 143.7 173 48.0
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.8e-32 143.3 173 47.4
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 1.8e-32 143.3 176 60.8
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 3.0e-32 142.5 176 60.8
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 3.0e-32 142.5 177 59.9
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 4.0e-32 142.1 171 61.4
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 6.8e-32 141.4 152 65.1
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 6.8e-32 141.4 164 48.2
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 1.5e-31 140.2 167 46.7
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 1.5e-31 140.2 167 46.7
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 3.4e-31 139.0 169 59.8
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 5.7e-31 138.3 169 59.8
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 5.7e-31 138.3 169 59.8
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 7.5e-31 137.9 169 59.2
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 7.5e-31 137.9 171 59.6
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 9.8e-31 137.5 157 45.9
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 9.8e-31 137.5 157 45.9
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 9.8e-31 137.5 157 45.9
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 1.7e-30 136.7 176 47.2
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 2.2e-30 136.3 108 58.3
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 2.8e-30 136.0 176 54.5
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 3.7e-30 135.6 162 46.9
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 1.8e-29 133.3 170 58.2
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 5.4e-29 131.7 162 45.1
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.7e-28 129.4 167 58.1
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 5.9e-28 128.3 148 60.8
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 7.2e-26 121.3 164 40.2
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 8.0e-25 117.9 96 61.5
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 8.9e-24 114.4 92 63.0
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 1.2e-23 114.0 148 41.9
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 2.4e-21 106.3 101 53.5
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 4.1e-21 105.5 101 53.5
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 3.3e-18 95.9 101 51.5
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 1.6e-12 77.0 95 42.1
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 7.3e-10 68.2 43 72.1
Aqoxy5G03468 Aquilegia oxysepala HOM05D002893 ORTHO05D003387 1.2e-07 60.8 68 45.6
CDE09G0940 Ceratophyllum demersum HOM05D002893 ORTHO05D003387 4.9e-06 55.5 70 40.0
TAR633G2105 Trochodendron aralioides HOM05D007663 ORTHO05D009455 6.4e-06 55.1 72 37.5
AagrBONN_evm.TU.Sc2ySwM_344.5184 Anthoceros agrestis HOM05D009890 ORTHO05D011110 8.3e-06 54.7 65 47.7
MCO14G492 Micromonas commoda HOM05D000227 ORTHO05D000152 8.3e-06 54.7 75 40.0


User provided reference genes

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