Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2031 Fragaria x ananassa HOM05D007134 ORTHO05D009004 4.7e-185 651.0 313 100.0
FvH4_5g21740 Fragaria vesca HOM05D007134 ORTHO05D009004 4.1e-181 637.9 313 97.8
FAN18G1678 Fragaria x ananassa HOM05D007134 ORTHO05D009004 3.6e-177 624.8 338 90.5
FAN13G3184 Fragaria x ananassa HOM05D007134 ORTHO05D009004 1.8e-176 622.5 313 95.5
RcHm_v2.0_Chr7g0209231 Rosa chinensis HOM05D007134 ORTHO05D009004 6.9e-168 594.0 313 92.0
FAN04G0135 Fragaria x ananassa HOM05D007134 ORTHO05D009004 1.8e-144 516.2 313 81.5
Prupe.5G039700 Prunus persica HOM05D007134 ORTHO05D009004 2.5e-141 505.8 315 77.1
MD06G1032400 Malus domestica HOM05D007134 ORTHO05D009004 6.3e-137 491.1 316 76.3
CiPaw.11G091800 Carya illinoinensis HOM05D007134 ORTHO05D009004 6.5e-126 454.5 309 70.6
Cfa012416 Carpinus fangiana HOM05D007134 ORTHO05D009004 3.6e-124 448.7 318 68.6
CANSAT21G0276 Cannabis sativa HOM05D007134 ORTHO05D009004 6.1e-124 448.0 307 69.4
TAR629G3531 Trochodendron aralioides HOM05D007134 ORTHO05D009004 6.3e-121 438.0 306 66.7
Haze_08260 Corylus avellana HOM05D007134 ORTHO05D009004 5.3e-120 434.9 334 65.3
Dinv28939 Davidia involucrata HOM05D007134 ORTHO05D009004 7.0e-120 434.5 306 68.3
Actinidia03384 Actinidia chinensis HOM05D007134 ORTHO05D009004 2.9e-118 429.1 328 63.7
Atru.chr6.1744 Acer truncatum HOM05D007134 ORTHO05D009004 6.5e-118 427.9 306 66.3
COL.COLO4_17065 Corchorus olitorius HOM05D007134 ORTHO05D009004 6.5e-118 427.9 301 67.4
PSO782G3567 Papaver somniferum HOM05D007134 ORTHO05D009004 1.1e-117 427.2 305 63.9
Hma1.2p1_2785F.1_g328490 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 1.9e-117 426.4 314 65.0
Hma1.2p1_0991F.1_g244990 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 2.5e-117 426.0 310 65.8
ClCG10G001760 Citrullus lanatus HOM05D007134 ORTHO05D009004 3.2e-117 425.6 306 65.4
Peaxi162Scf00006g04220 Petunia axillaris HOM05D007134 ORTHO05D009004 7.2e-117 424.5 297 68.4
TPR.G28658 Trifolium pratense HOM05D007134 ORTHO05D009004 9.4e-117 424.1 296 67.2
Phvul.003G230000 Phaseolus vulgaris HOM05D007134 ORTHO05D009004 2.1e-116 422.9 294 66.7
Potri.001G144000 Populus trichocarpa HOM05D007134 ORTHO05D009004 2.7e-116 422.5 308 64.6
Thecc.03G230400 Theobroma cacao HOM05D007134 ORTHO05D009004 4.7e-116 421.8 301 67.4
GSVIVG01013189001 Vitis vinifera HOM05D007134 ORTHO05D009004 4.7e-116 421.8 290 70.7
Glyma.05G112400 Glycine max HOM05D007134 ORTHO05D009004 1.0e-115 420.6 305 64.6
CSS0021568 Camellia sinensis var. sinensis HOM05D007134 ORTHO05D009004 6.7e-115 417.9 294 68.4
Psat4g079040 Pisum sativum HOM05D007134 ORTHO05D009004 3.3e-114 415.6 298 66.4
Duzib205G1618 Durio zibethinus HOM05D007134 ORTHO05D009004 7.4e-114 414.5 301 66.8
Ca_22068_v3 Cicer arietinum L. HOM05D007134 ORTHO05D009004 9.7e-114 414.1 297 65.7
MELO3C013860.2 Cucumis melo HOM05D007134 ORTHO05D009004 1.3e-113 413.7 308 63.0
Solyc08g077090.3 Solanum lycopersicum HOM05D007134 ORTHO05D009004 1.3e-113 413.7 295 65.8
Glyma.17G154600 Glycine max HOM05D007134 ORTHO05D009004 1.7e-113 413.3 298 64.8
Manes.15G172000 Manihot esculenta HOM05D007134 ORTHO05D009004 1.7e-113 413.3 301 66.8
Gohir.D12G211900 Gossypium hirsutum HOM05D007134 ORTHO05D009004 3.7e-113 412.1 301 66.4
Gorai.008G227500 Gossypium raimondii HOM05D007134 ORTHO05D009004 3.7e-113 412.1 301 66.4
Aqoxy3G02427 Aquilegia oxysepala HOM05D007134 ORTHO05D009004 4.8e-113 411.8 314 63.4
Lj4g0007831 Lotus japonicus HOM05D007134 ORTHO05D009004 4.8e-113 411.8 315 62.9
Nitab4.5_0002931g0030 Nicotiana tabacum HOM05D007134 ORTHO05D009004 4.8e-113 411.8 299 65.6
Sed0020644 Sechium edule HOM05D007134 ORTHO05D009004 4.8e-113 411.8 311 62.7
Lj8A293T18 Lonicera japonica HOM05D007134 ORTHO05D009004 7.0e-112 407.9 294 65.0
Sopen08g025670 Solanum pennellii HOM05D007134 ORTHO05D009004 7.0e-112 407.9 295 65.1
TWI81G0484 Tripterygium wilfordii HOM05D007134 ORTHO05D009004 7.0e-112 407.9 301 64.8
AT2G35320 Arabidopsis thaliana HOM05D007134 ORTHO05D009004 5.9e-111 404.8 302 63.2
Lalb_Chr05g0220571 Lupinus albus HOM05D007134 ORTHO05D009004 1.0e-110 404.1 299 65.2
CsaV3_3G001860 Cucumis sativus L. HOM05D007134 ORTHO05D009004 1.3e-110 403.7 297 64.3
arahy.Tifrunner.gnm1.ann1.2XNM6Q Arachis hypogaea HOM05D007134 ORTHO05D009004 2.9e-110 402.5 308 65.6
CAN.G1659.3 Capsicum annuum HOM05D007134 ORTHO05D009004 3.8e-110 402.1 296 63.9
THA.LOC104814437 Tarenaya hassleriana HOM05D007134 ORTHO05D009004 8.5e-110 401.0 292 64.7
A03p19520 Brassica napus HOM05D007134 ORTHO05D009004 1.1e-109 400.6 311 62.4
BraA03t11205Z Brassica rapa HOM05D007134 ORTHO05D009004 1.1e-109 400.6 311 62.4
Sabra01G0112400 Salix brachista HOM05D007134 ORTHO05D009004 1.1e-109 400.6 331 59.5
AL4G31350 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 1.9e-109 399.8 314 62.1
Sc01g0007540 Simmondsia chinensis HOM05D007134 ORTHO05D009004 2.5e-109 399.4 303 62.4
Ah.12g054890 Amaranthus hybridus HOM05D007134 ORTHO05D009004 4.2e-109 398.7 311 61.7
EL10Ac5g12144 Beta vulgaris HOM05D007134 ORTHO05D009004 4.2e-109 398.7 300 62.7
Ciclev10032247m.g Citrus clementina HOM05D007134 ORTHO05D009004 9.4e-109 397.5 294 63.6
AL457U10010 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 1.6e-108 396.7 314 61.8
Eucgr.E00292 Eucalyptus grandis HOM05D007134 ORTHO05D009004 1.6e-108 396.7 297 62.3
Thhalv10016981m.g Eutrema salsugineum HOM05D007134 ORTHO05D009004 2.1e-108 396.4 298 63.4
arahy.Tifrunner.gnm1.ann1.40JZG2 Arachis hypogaea HOM05D007134 ORTHO05D009004 2.7e-108 396.0 308 64.3
PGR042G2424 Punica granatum HOM05D007134 ORTHO05D009004 6.1e-108 394.8 311 61.1
PGSC0003DMG400017530 Solanum tuberosum HOM05D007134 ORTHO05D009004 6.1e-108 394.8 321 60.4
Carub.0004s1701 Capsella rubella HOM05D007134 ORTHO05D009004 1.0e-107 394.0 292 62.3
C03p22750 Brassica napus HOM05D007134 ORTHO05D009004 1.4e-107 393.7 294 63.9
Nitab4.5_0001276g0070 Nicotiana tabacum HOM05D007134 ORTHO05D009004 1.4e-107 393.7 284 65.5
AUR62007266 Chenopodium quinoa HOM05D007134 ORTHO05D009004 1.8e-107 393.3 301 62.5
BolC3t14673H Brassica oleracea HOM05D007134 ORTHO05D009004 5.2e-107 391.7 311 61.4
Sp4g17520 Schrenkiella parvula HOM05D007134 ORTHO05D009004 5.2e-107 391.7 295 63.1
CARHR129460 Cardamine hirsuta HOM05D007134 ORTHO05D009004 7.5e-106 387.9 294 61.2
Cc08_g02480 Coffea canephora HOM05D007134 ORTHO05D009004 2.8e-105 386.0 290 64.5
CDE12G0960 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 3.7e-105 385.6 300 62.0
Aa31LG9G15330 Aethionema arabicum HOM05D007134 ORTHO05D009004 1.1e-104 384.0 301 60.8
Lsat_1_v5_gn_6_64760 Lactuca sativa HOM05D007134 ORTHO05D009004 5.9e-103 378.3 295 60.3
Oeu036071.3 Olea europaea HOM05D007134 ORTHO05D009004 5.0e-102 375.2 327 56.3
CDE04G0512 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 8.5e-102 374.4 304 61.5
Rhsim11G0013400 Rhododendron simsii HOM05D007134 ORTHO05D009004 2.5e-101 372.9 430 47.0
MSTRG.6669 Avicennia marina HOM05D007134 ORTHO05D009004 3.2e-101 372.5 296 61.1
ECA233G0754 Erigeron canadensis HOM05D007134 ORTHO05D009004 4.2e-101 372.1 295 60.7
SGA_v2.0_scaffold34G13941 Striga asiatica HOM05D007134 ORTHO05D009004 2.3e-99 366.3 294 61.2
ATR0049G037 Amborella trichopoda HOM05D007134 ORTHO05D009004 2.6e-98 362.8 308 57.5
DCAR_032214 Daucus carota HOM05D007134 ORTHO05D009004 2.6e-98 362.8 295 57.6
HanXRQChr06g0178411 Helianthus annuus HOM05D007134 ORTHO05D009004 9.8e-98 360.9 297 58.2
Hund11255 Selenicereus undatus HOM05D007134 ORTHO05D009004 1.8e-96 356.7 335 54.9
Gohir.A12G209200 Gossypium hirsutum HOM05D007134 ORTHO05D009004 2.0e-95 353.2 271 65.7
Zm00001eb417090 Zea mays HOM05D007134 ORTHO05D009004 2.0e-95 353.2 303 55.1
SalBow7G3039 Salvia bowleyana HOM05D007134 ORTHO05D009004 2.9e-94 349.4 295 59.3
vmacro00339 Vaccinium macrocarpon HOM05D007134 ORTHO05D009004 1.5e-93 347.1 455 44.0
SalBow7G1996 Salvia bowleyana HOM05D007134 ORTHO05D009004 5.5e-93 345.1 306 56.9
Nn6g33621 Nelumbo nucifera HOM05D007134 ORTHO05D009004 2.1e-92 343.2 297 56.2
Os06g0110100 Oryza sativa ssp. japonica HOM05D007134 ORTHO05D009004 1.4e-91 340.5 296 55.7
Migut.M00165 Erythranthe guttata HOM05D007134 ORTHO05D009004 1.8e-91 340.1 285 57.9
BcaC01g05731 Brassica carinata HOM05D007134 ORTHO05D009004 1.4e-88 330.5 311 54.0
PSO063G6706 Papaver somniferum HOM05D007134 ORTHO05D009004 3.1e-88 329.3 302 52.0
unitig_749.g14086 Utricularia gibba HOM05D007134 ORTHO05D009004 1.3e-86 323.9 289 53.3
AUR62018733 Chenopodium quinoa HOM05D007134 ORTHO05D009004 2.3e-83 313.2 301 52.5
Medtr4g098510 Medicago truncatula HOM05D007134 ORTHO05D009004 5.2e-75 285.4 221 65.2
Pp3c2_15970 Physcomitrium patens HOM05D007134 ORTHO05D009004 1.3e-70 270.8 292 44.9
AagrBONN_evm.TU.Sc2ySwM_117.2263 Anthoceros agrestis HOM05D007134 ORTHO05D009004 1.2e-68 264.2 324 42.0
VMungo0251G0669 Vigna mungo HOM05D007134 ORTHO05D009004 4.1e-64 249.2 182 64.8
Pp3c1_31250 Physcomitrium patens HOM05D007134 ORTHO05D009004 8.6e-62 241.5 299 40.5
QL12p006104 Quercus lobata HOM05D007134 ORTHO05D009004 2.4e-56 223.4 150 70.0
Pp3c2_10940 Physcomitrium patens HOM05D007134 ORTHO05D009004 1.1e-53 214.5 297 39.4
Pp3c17_17110 Physcomitrium patens HOM05D007134 ORTHO05D009004 2.6e-50 203.4 267 40.1
VMungo0251G0585 Vigna mungo HOM05D007134 ORTHO05D009004 3.6e-44 183.0 124 67.7
Cpa.g.sc71.65 Carica papaya HOM05D007134 ORTHO05D009004 1.5e-34 151.0 87 71.3
SEGI_12545 Sequoiadendron giganteum HOM05D007134 ORTHO05D009004 3.2e-32 143.3 116 58.6
Nn6g33134 Nelumbo nucifera HOM05D007134 ORTHO05D009004 2.1e-07 60.8 70 48.6
Cre09.g398150 Chlamydomonas reinhardtii HOM05D007134 ORTHO05D009004 3.0e-06 57.0 88 34.1


User provided reference genes

Program Settings