Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2008 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.6e-143 512.7 254 100.0
FvH4_5g11000 Fragaria vesca HOM05D007016 ORTHO05D008847 6.9e-134 480.7 254 95.7
FAN04G1313 Fragaria x ananassa HOM05D007016 ORTHO05D008847 4.4e-133 478.0 254 95.7
FAN18G1330 Fragaria x ananassa HOM05D007016 ORTHO05D008847 3.3e-128 461.8 292 83.2
FAN13G1076 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.8e-121 439.5 254 90.2
RcHm_v2.0_Chr7g0186811 Rosa chinensis HOM05D007016 ORTHO05D008847 4.0e-118 428.3 254 85.4
MD14G1125100 Malus domestica HOM05D007016 ORTHO05D008847 6.3e-87 324.7 256 67.2
Prupe.5G128800 Prunus persica HOM05D007016 ORTHO05D008847 2.5e-83 312.8 259 68.3
MD06G1117700 Malus domestica HOM05D007016 ORTHO05D008847 5.5e-83 311.6 230 69.6
Rhsim02G0251600 Rhododendron simsii HOM05D007016 ORTHO05D008847 8.8e-73 277.7 235 62.1
Dinv12013 Davidia involucrata HOM05D007016 ORTHO05D008847 1.5e-72 276.9 239 61.9
Dinv34693 Davidia involucrata HOM05D007016 ORTHO05D008847 1.5e-72 276.9 239 61.5
Cfa011932 Carpinus fangiana HOM05D007016 ORTHO05D008847 5.7e-72 275.0 232 61.2
Haze_14080 Corylus avellana HOM05D007016 ORTHO05D008847 7.5e-72 274.6 250 58.0
vmacro11507 Vaccinium macrocarpon HOM05D007016 ORTHO05D008847 1.3e-71 273.9 250 58.4
GSVIVG01019642001 Vitis vinifera HOM05D007016 ORTHO05D008847 2.2e-71 273.1 241 58.9
TAR375G0929 Trochodendron aralioides HOM05D007016 ORTHO05D008847 1.1e-70 270.8 206 68.4
Eucgr.D01686 Eucalyptus grandis HOM05D007016 ORTHO05D008847 1.0e-68 264.2 259 59.1
Actinidia22202 Actinidia chinensis HOM05D007016 ORTHO05D008847 5.0e-68 261.9 251 56.6
Glyma.01G230300 Glycine max HOM05D007016 ORTHO05D008847 8.5e-68 261.2 206 64.6
PGR031G1249 Punica granatum HOM05D007016 ORTHO05D008847 1.1e-67 260.8 230 60.4
Thecc.03G221900 Theobroma cacao HOM05D007016 ORTHO05D008847 1.9e-67 260.0 249 57.8
QL02p028324 Quercus lobata HOM05D007016 ORTHO05D008847 9.4e-67 257.7 212 61.8
CiPaw.12G078100 Carya illinoinensis HOM05D007016 ORTHO05D008847 2.1e-66 256.5 244 58.2
Phvul.002G036800 Phaseolus vulgaris HOM05D007016 ORTHO05D008847 2.1e-66 256.5 259 54.4
VMungo1215G3083 Vigna mungo HOM05D007016 ORTHO05D008847 1.0e-65 254.2 237 58.2
Ciclev10021806m.g Citrus clementina HOM05D007016 ORTHO05D008847 5.2e-65 251.9 249 56.2
Duzib084G0025 Durio zibethinus HOM05D000458 ORTHO05D000951 8.8e-65 251.1 211 62.6
Gorai.003G076500 Gossypium raimondii HOM05D007016 ORTHO05D008847 8.8e-65 251.1 200 64.0
Duzib205G1809 Durio zibethinus HOM05D007016 ORTHO05D008847 3.4e-64 249.2 230 57.4
TWI15G0571 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 9.8e-64 247.7 249 55.8
Haze_09164 Corylus avellana HOM05D007016 ORTHO05D008847 2.8e-63 246.1 254 53.9
TWI81G0911 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 4.9e-63 245.4 218 58.3
Atru.chr9.1899 Acer truncatum HOM05D007016 ORTHO05D008847 1.1e-62 244.2 203 61.6
Aqoxy5G04260 Aquilegia oxysepala HOM05D007016 ORTHO05D008847 1.1e-62 244.2 247 55.9
Oeu022037.1 Olea europaea HOM05D007016 ORTHO05D008847 1.4e-62 243.8 230 55.7
Manes.02G003500 Manihot esculenta HOM05D007016 ORTHO05D008847 7.0e-62 241.5 247 53.8
Haze_09158 Corylus avellana HOM05D007016 ORTHO05D008847 9.2e-62 241.1 254 55.1
MBI04_g33411_MAGBIO Magnolia biondii HOM05D007016 ORTHO05D008847 2.7e-61 239.6 235 52.8
arahy.Tifrunner.gnm1.ann1.6JL1AX Arachis hypogaea HOM05D007016 ORTHO05D008847 1.3e-60 237.3 204 59.8
arahy.Tifrunner.gnm1.ann1.CXQL6Y Arachis hypogaea HOM05D007016 ORTHO05D008847 5.0e-60 235.3 204 59.3
COL.COLO4_10789 Corchorus olitorius HOM05D000458 ORTHO05D000951 8.6e-60 234.6 215 57.7
Sed0027229 Sechium edule HOM05D007016 ORTHO05D008847 1.9e-59 233.4 251 52.2
Potri.003G146100 Populus trichocarpa HOM05D007016 ORTHO05D008847 1.2e-58 230.7 259 52.5
Sabra03G0106200 Salix brachista HOM05D007016 ORTHO05D008847 3.6e-58 229.2 258 51.9
Ca_24467_v3 Cicer arietinum L. HOM05D007016 ORTHO05D008847 4.7e-58 228.8 253 53.4
ClCG01G001570 Citrullus lanatus HOM05D007016 ORTHO05D008847 4.7e-58 228.8 239 53.1
Cc08_g16690 Coffea canephora HOM05D007016 ORTHO05D008847 6.1e-58 228.4 254 52.4
Nitab4.5_0004251g0050 Nicotiana tabacum HOM05D007016 ORTHO05D008847 8.0e-58 228.0 249 51.4
AUR62007045 Chenopodium quinoa HOM05D007016 ORTHO05D008847 1.4e-57 227.3 206 58.3
CsaV3_5G001730 Cucumis sativus L. HOM05D007016 ORTHO05D008847 4.0e-57 225.7 241 52.3
Migut.O00796 Erythranthe guttata HOM05D007016 ORTHO05D008847 5.2e-57 225.3 231 53.2
PSO339G2192 Papaver somniferum HOM05D007016 ORTHO05D008847 8.9e-57 224.6 258 51.2
PSO339G4063 Papaver somniferum HOM05D007016 ORTHO05D008847 8.9e-57 224.6 258 51.6
Potri.001G084600 Populus trichocarpa HOM05D007016 ORTHO05D008847 8.9e-57 224.6 211 59.7
Sc01g0010620 Simmondsia chinensis HOM05D007016 ORTHO05D008847 2.6e-56 223.0 251 50.6
Peaxi162Scf00074g00350 Petunia axillaris HOM05D000458 ORTHO05D000951 3.4e-56 222.6 203 56.2
HanXRQChr06g0166831 Helianthus annuus HOM05D007016 ORTHO05D008847 5.7e-56 221.9 202 55.4
Medtr5g008220 Medicago truncatula HOM05D007016 ORTHO05D008847 5.7e-56 221.9 206 57.3
Gohir.A02G097900 Gossypium hirsutum HOM05D007016 ORTHO05D008847 2.2e-55 219.9 246 52.0
LjContig00222g0018079 Lotus japonicus HOM05D007016 ORTHO05D008847 4.9e-55 218.8 239 51.5
DCAR_006538 Daucus carota HOM05D007016 ORTHO05D008847 8.3e-55 218.0 190 60.5
MELO3C005780.2 Cucumis melo HOM05D007016 ORTHO05D008847 1.8e-54 216.9 253 50.6
EL10Ac5g12439 Beta vulgaris HOM05D007016 ORTHO05D008847 7.0e-54 214.9 252 51.2
ATR0620G109 Amborella trichopoda HOM05D007016 ORTHO05D008847 1.2e-53 214.2 241 49.0
Cpa.g.sc175.19 Carica papaya HOM05D007016 ORTHO05D008847 1.2e-53 214.2 186 60.2
ECA246G5308 Erigeron canadensis HOM05D007016 ORTHO05D008847 1.2e-53 214.2 210 51.4
Lsat_1_v5_gn_3_13941 Lactuca sativa HOM05D007016 ORTHO05D008847 2.7e-53 213.0 245 46.9
Nn3g18888 Nelumbo nucifera HOM05D007016 ORTHO05D008847 3.5e-53 212.6 283 46.3
SGA_v2.0_scaffold314G48366 Striga asiatica HOM05D007016 ORTHO05D008847 2.3e-52 209.9 210 54.8
Gohir.D03G085700 Gossypium hirsutum HOM05D007016 ORTHO05D008847 3.0e-52 209.5 200 56.5
TPR.G38026 Trifolium pratense HOM05D007016 ORTHO05D008847 6.6e-52 208.4 182 59.3
HPP92_022341 Vanilla planifolia HOM05D007016 ORTHO05D008847 2.1e-50 203.4 183 57.4
HPP92_022355 Vanilla planifolia HOM05D007016 ORTHO05D008847 2.1e-50 203.4 183 57.4
Ah.07g197890 Amaranthus hybridus HOM05D007016 ORTHO05D008847 4.0e-49 199.1 252 45.6
Zm00001eb428160 Zea mays HOM05D007016 ORTHO05D008847 1.2e-48 197.6 204 50.5
Lalb_Chr09g0320381 Lupinus albus HOM05D007016 ORTHO05D008847 7.5e-48 194.9 244 45.9
Nitab4.5_0007063g0030 Nicotiana tabacum HOM05D007016 ORTHO05D008847 9.8e-48 194.5 289 41.5
A07p21030 Brassica napus HOM05D003273 ORTHO05D004023 1.3e-47 194.1 195 55.4
BraA07t29790Z Brassica rapa HOM05D003273 ORTHO05D004023 4.9e-47 192.2 198 53.5
Thhalv10027936m.g Eutrema salsugineum HOM05D007016 ORTHO05D008847 6.4e-47 191.8 164 58.5
PGSC0003DMG400012122 Solanum tuberosum HOM05D007016 ORTHO05D008847 6.4e-47 191.8 253 47.0
Os04g0585600 Oryza sativa ssp. japonica HOM05D007016 ORTHO05D008847 1.4e-46 190.7 198 51.0
THA.LOC104809306 Tarenaya hassleriana HOM05D007016 ORTHO05D008847 1.4e-46 190.7 215 50.2
Sopen08g031240 Solanum pennellii HOM05D007016 ORTHO05D008847 2.4e-46 189.9 253 46.2
HanXRQChr17g0534751 Helianthus annuus HOM05D007016 ORTHO05D008847 3.2e-46 189.5 186 55.4
AL7G47260 Arabidopsis lyrata HOM05D007016 ORTHO05D008847 5.4e-46 188.7 181 57.5
BcaC02g08900 Brassica carinata HOM05D003273 ORTHO05D004023 5.4e-46 188.7 155 60.0
SEGI_36842 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 1.6e-45 187.2 231 45.5
BcaB06g27684 Brassica carinata HOM05D003273 ORTHO05D004023 2.0e-45 186.8 174 54.6
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 2.0e-45 186.8 174 54.6
Solyc08g083030.4 Solanum lycopersicum HOM05D007016 ORTHO05D008847 2.0e-45 186.8 253 45.8
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 2.7e-45 186.4 174 54.6
Carub.0007s3342 Capsella rubella HOM05D007016 ORTHO05D008847 4.6e-45 185.7 152 61.2
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 6.0e-45 185.3 173 54.3
BolC4t26521H Brassica oleracea HOM05D003273 ORTHO05D004023 6.0e-45 185.3 173 54.3
Sp7g00170 Schrenkiella parvula HOM05D007016 ORTHO05D008847 6.0e-45 185.3 194 54.1
AT5G41960 Arabidopsis thaliana HOM05D007016 ORTHO05D008847 1.0e-44 184.5 166 58.4
Lsat_1_v5_gn_3_14061 Lactuca sativa HOM05D007016 ORTHO05D008847 6.6e-44 181.8 242 43.4
MSTRG.15575 Avicennia marina HOM05D007016 ORTHO05D008847 1.1e-43 181.0 256 44.1
CARHR212600 Cardamine hirsuta HOM05D007016 ORTHO05D008847 1.1e-43 181.0 193 52.3
BcaC08g44572 Brassica carinata HOM05D003273 ORTHO05D004023 1.9e-43 180.3 158 59.5
MD16G1274000 Malus domestica HOM05D007016 ORTHO05D008847 2.5e-43 179.9 164 58.5
CAN.G567.80 Capsicum annuum HOM05D007016 ORTHO05D008847 4.3e-43 179.1 198 52.0
AUR62019909 Chenopodium quinoa HOM05D007016 ORTHO05D008847 1.2e-42 177.6 253 45.1
C06p20380 Brassica napus HOM05D003273 ORTHO05D004023 2.1e-42 176.8 161 57.8
unitig_62.g23644 Utricularia gibba HOM05D007016 ORTHO05D008847 1.1e-41 174.5 198 49.0
Aa31LG9G230 Aethionema arabicum HOM05D007016 ORTHO05D008847 2.3e-41 173.3 197 50.3
Pp3c14_22240 Physcomitrium patens HOM05D007016 ORTHO05D008847 1.0e-36 157.9 125 58.4
CSS0028177 Camellia sinensis var. sinensis HOM05D007016 ORTHO05D008847 2.3e-36 156.8 236 44.1
CDE07G1000 Ceratophyllum demersum HOM05D007016 ORTHO05D008847 4.3e-35 152.5 141 52.5
Mapoly0080s0071 Marchantia polymorpha HOM05D007016 ORTHO05D008847 8.1e-34 148.3 128 53.1
SMO164G0130 Selaginella moellendorffii HOM05D007016 ORTHO05D008847 6.8e-33 145.2 123 54.5
AagrBONN_evm.TU.Sc2ySwM_117.1459 Anthoceros agrestis HOM05D007016 ORTHO05D008847 1.2e-32 144.4 117 59.0
BolC6t37216H Brassica oleracea HOM05D007016 ORTHO05D008847 1.7e-31 140.6 184 46.7
Nitab4.5_0000051g0070 Nicotiana tabacum HOM05D007016 ORTHO05D008847 1.9e-27 127.1 121 55.4
Psat2g187480 Pisum sativum HOM05D007016 ORTHO05D008847 5.6e-27 125.6 90 66.7
CBR_g26222 Chara braunii HOM05D007016 ORTHO05D008847 7.3e-27 125.2 136 47.1
arahy.Tifrunner.gnm1.ann1.PIY4C5 Arachis hypogaea HOM05D007016 ORTHO05D008847 3.6e-26 122.9 83 68.7
CANSAT21G1603 Cannabis sativa HOM05D007016 ORTHO05D008847 6.2e-26 122.1 206 39.8
SEGI_07436 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 5.2e-25 119.0 100 56.0
Hund14199 Selenicereus undatus HOM05D007016 ORTHO05D008847 3.5e-21 106.3 101 54.5
arahy.Tifrunner.gnm1.ann1.HM96ZH Arachis hypogaea HOM05D007016 ORTHO05D008847 1.3e-20 104.4 116 50.9


User provided reference genes

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