Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 4619.3 2508 100.0
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 4446.0 2503 97.1
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 4418.2 2498 96.8
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 4416.7 2508 96.4
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 3933.6 2416 89.4
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 3168.6 2553 72.8
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 3040.8 2559 70.7
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 3025.7 2558 70.3
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2660.9 2573 64.2
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 2575.8 2567 62.9
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 2469.5 2574 60.6
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 2469.5 2574 61.0
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 2413.6 2578 60.2
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 2360.9 2575 58.7
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2336.6 2575 58.7
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2289.2 2575 57.6
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 2277.7 2575 57.3
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 2270.4 2579 58.7
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2266.5 2574 58.1
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2258.0 2577 57.0
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2247.6 2575 56.9
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2247.2 2591 57.4
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2239.5 2574 58.1
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 2236.1 2577 57.9
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2235.7 2556 58.0
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2201.0 2592 56.6
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2195.6 2561 57.0
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2144.0 2579 55.4
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2143.6 2562 55.7
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 2125.5 2569 55.5
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 2122.8 2582 56.5
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 2116.7 2580 55.2
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2115.5 2578 55.2
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 2111.6 2612 53.8
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2078.1 2582 54.0
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 2072.7 2591 54.7
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 2071.6 2584 54.0
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 2050.4 2589 54.5
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 2031.1 2558 54.2
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 2025.4 2569 54.0
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 2001.9 2611 52.6
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1983.0 2570 52.7
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1976.1 2564 53.4
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1967.2 2560 52.9
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1939.9 2584 52.1
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1939.9 2548 52.9
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1934.5 2605 50.9
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1929.1 2557 52.2
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1927.9 2560 52.5
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1911.7 2261 55.9
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1911.0 2642 49.4
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1877.4 2611 51.1
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1872.4 2370 53.9
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1867.8 2617 51.1
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1867.4 2566 52.1
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1866.7 2566 51.4
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1851.6 2556 50.7
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1848.2 2572 49.8
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1840.9 1862 62.6
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1833.9 2552 51.4
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1833.9 2552 51.0
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1828.1 2554 50.5
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1823.9 2573 50.3
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1822.4 2588 49.7
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1820.8 2558 49.6
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1809.3 2588 50.6
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1805.4 2578 49.5
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1799.3 2100 57.9
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1799.3 2592 49.2
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1788.9 2569 50.4
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1781.1 2702 47.9
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1734.9 2459 49.9
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1723.4 2576 49.4
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1712.6 2603 47.8
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1707.2 2571 49.2
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1685.6 2570 49.0
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1679.8 2515 47.2
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1650.2 2465 47.7
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1577.0 2560 47.0
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1564.3 2581 45.8
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1562.7 2579 46.6
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1518.8 2564 46.3
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1502.3 2574 46.5
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1452.6 2692 42.2
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1438.7 2570 43.6
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1431.0 2692 42.9
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1370.9 2619 41.6
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1331.6 2615 41.5
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1307.4 2575 43.1
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1295.8 2559 42.6
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1269.2 2563 41.9
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1267.7 2559 42.0
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1265.8 2508 42.2
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1261.5 2613 42.1
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1238.4 2674 41.2
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 1237.6 2509 41.7
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1207.2 2554 40.6
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 0.0e+00 1179.5 1703 50.7
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 0.0e+00 1170.2 2562 40.3
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 0.0e+00 1141.3 2479 40.3
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 0.0e+00 1104.0 2485 38.4
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1104.0 1349 53.2
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1095.9 1744 44.7
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 1.2e-294 1018.1 1070 61.3
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 2.3e-290 1003.8 1045 58.4
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 1.3e-264 918.3 1030 59.9
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 2.3e-258 897.5 2579 35.9
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 1.2e-251 875.2 666 77.9
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 9.8e-241 839.0 2496 36.7
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 1.2e-233 815.5 2819 34.4
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 2.7e-222 777.7 2512 35.5
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 5.6e-220 770.0 2514 35.3
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 5.6e-220 770.0 971 52.9
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 8.1e-219 766.1 782 59.8
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 1.7e-216 758.4 2537 35.4
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 3.8e-216 757.3 2519 35.4
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 3.8e-216 757.3 2519 35.4
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 9.9e-209 732.6 945 54.4
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.9e-188 665.2 2621 31.2
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 1.3e-176 625.9 640 60.9
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 2.2e-168 598.6 2019 35.6
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 4.4e-164 584.3 1881 31.6
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 1.2e-145 523.1 507 59.4
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 3.8e-144 518.1 447 63.5
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 5.0e-136 491.1 1417 36.4
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 1.1e-127 463.4 846 40.9
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 1.4e-122 446.4 1737 33.0
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 2.2e-115 422.5 1002 35.5
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 2.1e-102 379.4 2991 28.7
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 6.4e-99 367.9 1303 31.2
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 6.0e-97 361.3 249 79.9
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 4.3e-95 355.1 249 79.1
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 3.1e-85 322.4 2843 28.2
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 2.5e-79 302.8 302 56.3
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 3.4e-76 292.4 983 32.1
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 4.2e-66 258.8 1017 33.2
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.7e-57 229.6 2827 27.2
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 1.0e-56 227.6 443 38.8
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 2.3e-56 226.5 509 39.3
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 7.7e-52 211.5 2815 26.6
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 6.5e-51 208.4 448 38.6
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 3.2e-50 206.1 2468 25.5
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 2.6e-47 196.4 228 56.1
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 4.5e-44 185.7 542 34.9
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 4.8e-38 165.6 310 39.4
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 4.5e-36 159.1 212 51.4
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 3.8e-35 156.0 166 58.4
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.1e-29 137.9 334 35.3
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.1e-26 127.9 246 42.3
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 7.0e-21 108.6 2232 25.5
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 5.9e-20 105.5 316 31.6
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 4.2e-18 99.4 64 73.4
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 2.8e-17 96.7 158 43.0
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 2.8e-17 96.7 61 75.4
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 9.2e-13 81.6 71 62.0
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 2.3e-11 77.0 132 44.7
Oeu003961.1 Olea europaea HOM05D004560 ORTHO05D005540 4.3e-10 72.8 127 46.5
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 6.1e-09 68.9 58 60.3
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.5e-07 64.3 153 35.9
Psat2g096600 Pisum sativum HOM05D004560 ORTHO05D005540 3.7e-06 59.7 91 47.3


User provided reference genes

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