Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1989 Fragaria x ananassa HOM05D006218 ORTHO05D007338 3.3e-134 481.9 273 100.0
FvH4_5g24880 Fragaria vesca HOM05D006218 ORTHO05D007338 1.3e-66 257.3 270 62.6
Cfa013418 Carpinus fangiana HOM05D000602 ORTHO05D007338 1.0e-50 204.5 201 52.7
QL02p015096 Quercus lobata HOM05D006218 ORTHO05D007338 1.3e-50 204.1 197 70.6
Medtr2g100200 Medicago truncatula HOM05D006218 ORTHO05D007338 8.9e-47 191.4 222 47.7
Atru.BG.229.p Acer truncatum HOM05D006218 ORTHO05D007338 2.9e-45 186.4 221 53.4
Thhalv10003177m.g Eutrema salsugineum HOM05D006218 ORTHO05D007338 2.1e-43 180.3 222 49.5
Rhsim10G0062900 Rhododendron simsii HOM05D006218 ORTHO05D007338 4.6e-43 179.1 202 59.9
TPR.G6568 Trifolium pratense HOM05D006218 ORTHO05D007338 4.3e-41 172.6 196 48.5
Lsat_1_v5_gn_2_69281 Lactuca sativa HOM05D006218 ORTHO05D007338 7.3e-41 171.8 223 43.9
RcHm_v2.0_Chr6g0271871 Rosa chinensis HOM05D006218 ORTHO05D007338 1.1e-39 167.9 88 88.6
QL02p015030 Quercus lobata HOM05D006218 ORTHO05D007338 1.2e-38 164.5 88 85.2
RcHm_v2.0_Chr7g0215761 Rosa chinensis HOM05D006218 ORTHO05D007338 2.0e-38 163.7 190 46.3
CsaV3_4G037400 Cucumis sativus L. HOM05D006218 ORTHO05D007338 2.2e-37 160.2 221 57.5
Rhsim10G0066100 Rhododendron simsii HOM05D006218 ORTHO05D007338 2.9e-37 159.8 187 47.1
Prupe.5G009500 Prunus persica HOM05D006218 ORTHO05D007338 1.4e-36 157.5 88 81.8
Haze_21910 Corylus avellana HOM05D000602 ORTHO05D002639 3.2e-36 156.4 167 61.7
Dinv31962 Davidia involucrata HOM05D006218 ORTHO05D007338 3.2e-36 156.4 88 80.7
HPP92_001390 Vanilla planifolia HOM05D006218 ORTHO05D007338 4.2e-36 156.0 215 52.1
MD16G1284000 Malus domestica HOM05D006218 ORTHO05D007338 1.6e-35 154.1 88 80.7
Thecc.08G062100 Theobroma cacao HOM05D006218 ORTHO05D007338 2.1e-35 153.7 88 79.5
GSVIVG01013390001 Vitis vinifera HOM05D006218 ORTHO05D007338 4.6e-35 152.5 88 79.5
FvH4_5g25520 Fragaria vesca HOM05D006218 ORTHO05D007338 1.7e-34 150.6 85 82.4
MELO3C017038.2 Cucumis melo HOM05D006218 ORTHO05D007338 3.9e-34 149.4 221 55.7
PGR083G1452 Punica granatum HOM05D006218 ORTHO05D007338 5.1e-34 149.1 88 76.1
ECA247G3408 Erigeron canadensis HOM05D006218 ORTHO05D007338 6.6e-34 148.7 184 45.7
CANSAT80G1826 Cannabis sativa HOM05D006218 ORTHO05D007338 8.7e-34 148.3 88 71.6
CSS0036772 Camellia sinensis var. sinensis HOM05D006218 ORTHO05D007338 1.1e-33 147.9 88 77.3
CSS0043525 Camellia sinensis var. sinensis HOM05D006218 ORTHO05D007338 1.1e-33 147.9 88 77.3
CiPaw.08G075100 Carya illinoinensis HOM05D006218 ORTHO05D007338 1.1e-33 147.9 88 73.9
Haze_22828 Corylus avellana HOM05D006218 ORTHO05D007338 5.6e-33 145.6 87 75.9
Duzib041G0398 Durio zibethinus HOM05D006218 ORTHO05D007338 5.6e-33 145.6 88 73.9
Duzib093G0304 Durio zibethinus HOM05D006218 ORTHO05D007338 1.3e-32 144.4 88 73.9
DCAR_006421 Daucus carota HOM05D006218 ORTHO05D007338 1.6e-32 144.1 106 63.2
Ciclev10000757m.g Citrus clementina HOM05D006218 ORTHO05D007338 2.1e-32 143.7 88 75.0
Hma1.2p1_0060F.1_g032840 Hydrangea macrophylla HOM05D006218 ORTHO05D007338 3.6e-32 142.9 88 71.6
TWI39G0099 Tripterygium wilfordii HOM05D006218 ORTHO05D007338 1.1e-31 141.4 86 73.3
Gohir.D05G181600 Gossypium hirsutum HOM05D006218 ORTHO05D007338 1.4e-31 141.0 88 75.0
Gorai.009G186600 Gossypium raimondii HOM05D006218 ORTHO05D007338 1.4e-31 141.0 88 75.0
AUR62005208 Chenopodium quinoa HOM05D006218 ORTHO05D007338 1.2e-30 137.9 86 73.3
Ah.04g161150 Amaranthus hybridus HOM05D006218 ORTHO05D007338 2.0e-30 137.1 88 71.6
FAN13G2474 Fragaria x ananassa HOM05D002007 ORTHO05D000355 7.6e-30 135.2 66 97.0
EL10Ac4g09913 Beta vulgaris HOM05D006218 ORTHO05D007338 9.9e-30 134.8 88 68.2
ClCG11G018820 Citrullus lanatus HOM05D006218 ORTHO05D007338 4.9e-29 132.5 123 57.7
Cc00_g16990 Coffea canephora HOM05D006218 ORTHO05D007338 6.4e-29 132.1 88 67.0
HanXRQChr14g0446721 Helianthus annuus HOM05D006218 ORTHO05D007338 1.1e-28 131.3 88 67.0
Sed0014170 Sechium edule HOM05D006218 ORTHO05D007338 7.1e-28 128.6 123 55.3
SHI24507 Sapria himalayana HOM05D006218 ORTHO05D007338 2.3e-26 123.6 88 62.5
SGA_v2.0_scaffold21G09648 Striga asiatica HOM05D006218 ORTHO05D007338 5.1e-26 122.5 88 60.2
HanXRQChr03g0064651 Helianthus annuus HOM05D006218 ORTHO05D007338 3.7e-24 116.3 75 70.7
AUR62000761 Chenopodium quinoa HOM05D006218 ORTHO05D007338 5.3e-23 112.5 70 74.3
SalBow6G0752 Salvia bowleyana HOM05D006218 ORTHO05D007338 1.5e-22 110.9 179 38.0
Lj4P809T22 Lonicera japonica HOM05D006218 ORTHO05D007338 5.8e-22 109.0 166 50.0
Sopen02g018380 Solanum pennellii HOM05D006218 ORTHO05D007338 1.9e-20 104.0 88 58.0
COL.COLO4_19322 Corchorus olitorius HOM05D006218 ORTHO05D007338 2.5e-20 103.6 65 69.2
RcHm_v2.0_Chr7g0219831 Rosa chinensis HOM05D006218 ORTHO05D007338 2.5e-20 103.6 180 39.4
Ca_01194_v3 Cicer arietinum L. HOM05D006218 ORTHO05D007338 3.0e-18 96.7 165 37.6
Sc16g0011970 Simmondsia chinensis HOM05D006218 ORTHO05D007338 5.1e-18 95.9 60 75.0
Migut.O00315 Erythranthe guttata HOM05D006218 ORTHO05D007338 1.1e-17 94.7 59 72.9
RcHm_v2.0_Chr7g0215771 Rosa chinensis HOM05D006218 ORTHO05D007338 1.9e-17 94.0 52 88.5
Hma1.2p1_0612F.1_g188870 Hydrangea macrophylla HOM05D006218 ORTHO05D007338 2.5e-17 93.6 197 29.9
HanXRQChr15g0480181 Helianthus annuus HOM05D017474 ORTHO05D011180 1.3e-16 91.3 58 72.4
RcHm_v2.0_Chr7g0215901 Rosa chinensis HOM05D006218 ORTHO05D007338 1.3e-16 91.3 190 32.6
FvH4_5g25350 Fragaria vesca HOM05D006218 ORTHO05D007338 2.1e-16 90.5 95 55.8
PGSC0003DMG400021154 Solanum tuberosum HOM05D006218 ORTHO05D007338 2.1e-16 90.5 88 52.3
FAN18G0123 Fragaria x ananassa HOM05D006218 ORTHO05D007338 8.2e-16 88.6 95 54.7
FAN08G0845 Fragaria x ananassa HOM05D006218 ORTHO05D007338 9.0e-15 85.1 101 49.5
Oeu013581.1 Olea europaea HOM05D006218 ORTHO05D007338 1.2e-14 84.7 88 51.1
FAN08G1712 Fragaria x ananassa HOM05D006218 ORTHO05D007338 3.4e-14 83.2 192 29.7
HPP92_013057 Vanilla planifolia HOM05D006218 ORTHO05D007338 9.3e-12 75.1 151 47.7
HanXRQChr10g0293751 Helianthus annuus HOM05D006218 ORTHO05D007338 1.3e-10 71.2 67 55.2
RcHm_v2.0_Chr7g0217231 Rosa chinensis HOM05D006218 ORTHO05D007338 1.8e-10 70.9 40 87.5
Rhsim10G0065400 Rhododendron simsii HOM05D006218 ORTHO05D007338 3.9e-10 69.7 53 56.6
Psat5g293680 Pisum sativum HOM05D006218 ORTHO05D007338 5.1e-10 69.3 66 53.0
Lsat_1_v5_gn_9_33960 Lactuca sativa HOM05D006218 ORTHO05D007338 4.3e-09 66.2 113 42.5
RcHm_v2.0_Chr6g0271981 Rosa chinensis HOM05D006218 ORTHO05D007338 1.2e-06 58.2 32 84.4
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 2.0e-06 57.4 186 23.7
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 2.6e-06 57.0 197 22.8
MSTRG.20317 Avicennia marina HOM05D007320 ORTHO05D009290 4.5e-06 56.2 192 24.0
Peaxi162Scf00745g00038 Petunia axillaris HOM05D007320 ORTHO05D009290 7.7e-06 55.5 185 22.7
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 7.7e-06 55.5 197 22.8
Actinidia37914 Actinidia chinensis HOM05D006218 ORTHO05D007338 1.0e-05 55.1 32 75.0


User provided reference genes

Program Settings