Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1977 Fragaria x ananassa HOM05D006666 ORTHO05D008276 2.4e-63 245.4 124 100.0
FAN04G1657 Fragaria x ananassa HOM05D006666 ORTHO05D008276 7.6e-62 240.4 124 97.6
FAN13G2387 Fragaria x ananassa HOM05D006666 ORTHO05D008276 3.8e-61 238.0 124 96.8
FvH4_5g18600 Fragaria vesca HOM05D006666 ORTHO05D008276 2.1e-59 232.3 124 94.4
FAN18G1406 Fragaria x ananassa HOM05D006666 ORTHO05D008276 2.1e-59 232.3 124 94.4
RcHm_v2.0_Chr7g0176901 Rosa chinensis HOM05D006666 ORTHO05D008276 1.8e-55 219.2 124 88.7
Prupe.5G245400 Prunus persica HOM05D006666 ORTHO05D008276 1.7e-40 169.5 127 70.9
MD14G1247300 Malus domestica HOM05D006666 ORTHO05D008276 2.3e-34 149.1 132 64.4
MD06G1241100 Malus domestica HOM05D006666 ORTHO05D008276 2.8e-32 142.1 143 58.0
Haze_18405 Corylus avellana HOM05D006666 ORTHO05D008276 2.4e-31 139.0 132 60.6
Cfa017808 Carpinus fangiana HOM05D006666 ORTHO05D008276 7.0e-31 137.5 131 60.3
CiPaw.16G075700 Carya illinoinensis HOM05D006666 ORTHO05D008276 9.1e-31 137.1 132 61.4
PGR083G1370 Punica granatum HOM05D006666 ORTHO05D008276 1.7e-29 132.9 117 62.4
Sopen03g029740 Solanum pennellii HOM05D006666 ORTHO05D008276 5.0e-29 131.3 119 59.7
Solyc03g019880.3 Solanum lycopersicum HOM05D006666 ORTHO05D008276 3.2e-28 128.6 119 59.7
PGSC0003DMG400015210 Solanum tuberosum HOM05D006666 ORTHO05D008276 1.6e-27 126.3 119 58.8
Dinv09758 Davidia involucrata HOM05D006666 ORTHO05D008276 2.7e-27 125.6 124 56.5
CSS0032824 Camellia sinensis var. sinensis HOM05D006666 ORTHO05D008276 3.6e-27 125.2 134 53.7
Ciclev10023646m.g Citrus clementina HOM05D006666 ORTHO05D008276 6.1e-27 124.4 83 71.1
PSO063G5885 Papaver somniferum HOM05D006666 ORTHO05D008276 6.1e-27 124.4 127 54.3
PSO782G1773 Papaver somniferum HOM05D006666 ORTHO05D008276 6.1e-27 124.4 127 54.3
TAR629G2781 Trochodendron aralioides HOM05D006666 ORTHO05D008276 2.3e-26 122.5 91 70.3
Eucgr.H00663 Eucalyptus grandis HOM05D006666 ORTHO05D008276 1.1e-25 120.2 89 69.7
EL10Ac7g16891 Beta vulgaris HOM05D006666 ORTHO05D008276 1.5e-25 119.8 111 56.8
MSTRG.11567 Avicennia marina HOM05D006666 ORTHO05D008276 2.0e-25 119.4 79 72.2
AUR62037011 Chenopodium quinoa HOM05D006666 ORTHO05D008276 2.6e-25 119.0 125 52.8
MBI06_g22566_MAGBIO Magnolia biondii HOM05D006666 ORTHO05D008276 2.6e-25 119.0 102 58.8
Peaxi162Scf00171g00030 Petunia axillaris HOM05D006666 ORTHO05D008276 2.6e-25 119.0 118 55.1
Ah.15g090740 Amaranthus hybridus HOM05D006666 ORTHO05D008276 3.3e-25 118.6 102 59.8
CAN.G861.22 Capsicum annuum HOM05D006666 ORTHO05D008276 5.7e-25 117.9 125 53.6
Nitab4.5_0009307g0050 Nicotiana tabacum HOM05D006666 ORTHO05D008276 7.5e-25 117.5 124 54.8
Atru.chr9.23 Acer truncatum HOM05D006666 ORTHO05D008276 9.7e-25 117.1 122 52.5
Nitab4.5_0008182g0010 Nicotiana tabacum HOM05D006666 ORTHO05D008276 9.7e-25 117.1 120 55.0
Potri.004G066900 Populus trichocarpa HOM05D006666 ORTHO05D008276 9.7e-25 117.1 78 73.1
Psat6g054440 Pisum sativum HOM05D006666 ORTHO05D008276 1.7e-24 116.3 128 46.9
Rhsim08G0006200 Rhododendron simsii HOM05D006666 ORTHO05D008276 2.2e-24 115.9 98 63.3
AUR62006207 Chenopodium quinoa HOM05D006666 ORTHO05D008276 3.7e-24 115.2 79 68.4
SGA_v2.0_scaffold25G10726 Striga asiatica HOM05D006666 ORTHO05D008276 3.7e-24 115.2 79 69.6
TWI81G0077 Tripterygium wilfordii HOM05D006666 ORTHO05D008276 3.7e-24 115.2 79 69.6
Actinidia02653 Actinidia chinensis HOM05D006666 ORTHO05D008276 4.8e-24 114.8 79 70.9
MELO3C001965.2 Cucumis melo HOM05D006666 ORTHO05D008276 4.8e-24 114.8 131 49.6
Glyma.10G174200 Glycine max HOM05D006666 ORTHO05D008276 4.8e-24 114.8 89 64.0
Hund06740 Selenicereus undatus HOM05D006666 ORTHO05D008276 4.8e-24 114.8 101 61.4
vmacro17828 Vaccinium macrocarpon HOM05D006666 ORTHO05D008276 6.3e-24 114.4 73 74.0
Ca_09926_v3 Cicer arietinum L. HOM05D006666 ORTHO05D008276 8.2e-24 114.0 87 60.9
Thecc.03G072200 Theobroma cacao HOM05D006666 ORTHO05D008276 8.2e-24 114.0 116 55.2
Sc10g0008660 Simmondsia chinensis HOM05D006666 ORTHO05D008276 1.1e-23 113.6 110 55.5
Duzib205G1681 Durio zibethinus HOM05D006666 ORTHO05D008276 1.4e-23 113.2 116 53.4
Lsat_1_v5_gn_8_1660 Lactuca sativa HOM05D006666 ORTHO05D008276 2.4e-23 112.5 126 51.6
Medtr1g077550 Medicago truncatula HOM05D006666 ORTHO05D008276 3.1e-23 112.1 131 48.1
Nn4g25066 Nelumbo nucifera HOM05D006666 ORTHO05D008276 3.1e-23 112.1 92 62.0
GSVIVG01024243001 Vitis vinifera HOM05D006666 ORTHO05D008276 4.1e-23 111.7 82 70.7
Hma1.2p1_0816F.1_g222970 Hydrangea macrophylla HOM05D006666 ORTHO05D008276 5.3e-23 111.3 105 58.1
ATR0124G047 Amborella trichopoda HOM05D006666 ORTHO05D008276 9.1e-23 110.5 75 69.3
THA.LOC104812606 Tarenaya hassleriana HOM05D006666 ORTHO05D008276 9.1e-23 110.5 128 53.9
Manes.02G219900 Manihot esculenta HOM05D006666 ORTHO05D008276 1.2e-22 110.2 92 60.9
Glyma.20G216200 Glycine max HOM05D006666 ORTHO05D008276 2.0e-22 109.4 93 59.1
HanXRQChr05g0141151 Helianthus annuus HOM05D006666 ORTHO05D008276 2.0e-22 109.4 89 65.2
Aa31sc45G80 Aethionema arabicum HOM05D006666 ORTHO05D008276 2.7e-22 109.0 77 72.7
Cc00_g07700 Coffea canephora HOM05D006666 ORTHO05D008276 3.5e-22 108.6 109 54.1
Phvul.L006501 Phaseolus vulgaris HOM05D006666 ORTHO05D008276 3.5e-22 108.6 87 63.2
SalBow5G0154 Salvia bowleyana HOM05D006666 ORTHO05D008276 3.5e-22 108.6 79 65.8
AL1G41680 Arabidopsis lyrata HOM05D006666 ORTHO05D008276 4.5e-22 108.2 79 70.9
Gohir.A07G062700 Gossypium hirsutum HOM05D006666 ORTHO05D008276 4.5e-22 108.2 103 52.4
TPR.G8870 Trifolium pratense HOM05D006666 ORTHO05D008276 4.5e-22 108.2 87 60.9
CARHR027620 Cardamine hirsuta HOM05D006666 ORTHO05D008276 5.9e-22 107.8 79 72.2
VMungo0720G1342 Vigna mungo HOM05D006666 ORTHO05D008276 5.9e-22 107.8 83 65.1
Sp1g24340 Schrenkiella parvula HOM05D006666 ORTHO05D008276 7.7e-22 107.5 71 76.1
AT1G28150 Arabidopsis thaliana HOM05D006666 ORTHO05D008276 1.3e-21 106.7 79 69.6
BraA07t28933Z Brassica rapa HOM05D006666 ORTHO05D008276 1.3e-21 106.7 71 74.6
Thhalv10009115m.g Eutrema salsugineum HOM05D006666 ORTHO05D008276 1.3e-21 106.7 72 73.6
BcaC05g26820 Brassica carinata HOM05D006666 ORTHO05D008276 1.7e-21 106.3 96 61.5
BcaC06g35338 Brassica carinata HOM05D006666 ORTHO05D008276 1.7e-21 106.3 71 74.6
C05p26900 Brassica napus HOM05D006666 ORTHO05D008276 1.7e-21 106.3 96 61.5
C07p17240 Brassica napus HOM05D006666 ORTHO05D008276 1.7e-21 106.3 71 74.6
BolC5t31408H Brassica oleracea HOM05D006666 ORTHO05D008276 1.7e-21 106.3 96 61.5
BolC7t42228H Brassica oleracea HOM05D006666 ORTHO05D008276 1.7e-21 106.3 71 74.6
Lj5g0025802 Lotus japonicus HOM05D006666 ORTHO05D008276 1.7e-21 106.3 81 63.0
Gorai.001G070900 Gossypium raimondii HOM05D006666 ORTHO05D008276 2.2e-21 105.9 103 51.5
ClCG04G012450 Citrullus lanatus HOM05D006666 ORTHO05D008276 3.8e-21 105.1 131 45.0
A07p11450 Brassica napus HOM05D006666 ORTHO05D008276 8.5e-21 104.0 71 73.2
Lalb_Chr21g0311701 Lupinus albus HOM05D006666 ORTHO05D008276 8.5e-21 104.0 92 54.3
BcaB03g13950 Brassica carinata HOM05D006666 ORTHO05D008276 1.1e-20 103.6 71 73.2
CDE06G1954 Ceratophyllum demersum HOM05D006666 ORTHO05D008276 1.1e-20 103.6 93 64.5
BraA09t39302Z Brassica rapa HOM05D006666 ORTHO05D008276 1.5e-20 103.2 72 75.0
CsaV3_1G005250 Cucumis sativus L. HOM05D006666 ORTHO05D008276 1.9e-20 102.8 117 47.9
DCAR_011403 Daucus carota HOM05D006666 ORTHO05D008276 3.2e-20 102.1 124 46.8
Sed0024015 Sechium edule HOM05D006666 ORTHO05D008276 3.2e-20 102.1 79 63.3
A09p37900 Brassica napus HOM05D006666 ORTHO05D008276 4.2e-20 101.7 72 73.6
Gohir.D07G067300 Gossypium hirsutum HOM05D006666 ORTHO05D008276 4.2e-20 101.7 102 52.0
SalBow1G4610 Salvia bowleyana HOM05D006666 ORTHO05D008276 4.2e-20 101.7 72 63.9
Carub.0001s2658 Capsella rubella HOM05D006666 ORTHO05D008276 1.2e-19 100.1 95 57.9
Migut.O00284 Erythranthe guttata HOM05D006666 ORTHO05D008276 1.2e-19 100.1 95 58.9
CDE04G3444 Ceratophyllum demersum HOM05D006666 ORTHO05D008276 2.7e-19 99.0 94 60.6
HPP92_021068 Vanilla planifolia HOM05D006666 ORTHO05D008276 2.7e-19 99.0 123 49.6
SEGI_19522 Sequoiadendron giganteum HOM05D006666 ORTHO05D008276 6.1e-19 97.8 107 50.5
Sabra04G0044800 Salix brachista HOM05D006666 ORTHO05D008276 8.0e-19 97.4 63 74.6
Sabra11G0106200 Salix brachista HOM05D006666 ORTHO05D008276 8.0e-19 97.4 63 74.6
Sabra17G0092500 Salix brachista HOM05D006666 ORTHO05D008276 8.0e-19 97.4 63 74.6
ECA233G5286 Erigeron canadensis HOM05D006666 ORTHO05D008276 1.8e-18 96.3 72 66.7
Os04g0528100 Oryza sativa ssp. japonica HOM05D006666 ORTHO05D008276 4.0e-18 95.1 89 55.1
unitig_749.g13724 Utricularia gibba HOM05D006666 ORTHO05D008276 5.2e-18 94.7 102 52.0
QL10p036089 Quercus lobata HOM05D006666 ORTHO05D008276 4.4e-17 91.7 69 66.7
AagrBONN_evm.TU.Sc2ySwM_344.686 Anthoceros agrestis HOM05D006666 ORTHO05D008276 9.8e-17 90.5 75 61.3
arahy.Tifrunner.gnm1.ann1.UGS5Z8 Arachis hypogaea HOM05D006666 ORTHO05D008276 1.3e-16 90.1 108 46.3
QL10p036477 Quercus lobata HOM05D006666 ORTHO05D008276 2.8e-16 89.0 61 70.5
Aqoxy3G04334 Aquilegia oxysepala HOM05D006666 ORTHO05D008276 3.7e-16 88.6 124 45.2
Pp3c19_21970 Physcomitrium patens HOM05D006666 ORTHO05D008276 3.7e-16 88.6 73 53.4
COL.COLO4_25502 Corchorus olitorius HOM05D006666 ORTHO05D008276 4.8e-16 88.2 60 70.0
Mapoly0096s0047 Marchantia polymorpha HOM05D006666 ORTHO05D008276 1.1e-15 87.0 100 46.0
Oeu038394.2 Olea europaea HOM05D006666 ORTHO05D008276 9.1e-15 84.0 62 66.1
SMO143G0007 Selaginella moellendorffii HOM05D006666 ORTHO05D008276 7.7e-14 80.9 79 48.1
Hma1.2p1_0816F.1_g222980 Hydrangea macrophylla HOM05D006666 ORTHO05D008276 2.1e-11 72.8 58 65.5
MCO08G267 Micromonas commoda HOM05D006666 ORTHO05D008276 4.7e-11 71.6 94 40.4
COL.COLO4_37022 Corchorus olitorius HOM05D006666 ORTHO05D008276 1.4e-10 70.1 52 65.4
PRCOL_00004364 Prasinoderma coloniale HOM05D006666 ORTHO05D008276 8.8e-10 67.4 82 39.0
Cre03.g203800 Chlamydomonas reinhardtii HOM05D006666 ORTHO05D008276 9.8e-09 63.9 44 61.4


User provided reference genes

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